Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48507 * 109.46742 * 240.00220 * 3 2 1 5 5 H 1.48493 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47087 * 120.00284 * 3 2 1 7 7 C 1.37882 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99941 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47073 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99710 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99722 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99730 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46894 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47033 * 179.97438 * 15 14 13 17 17 S 1.65602 * 120.00385 * 164.99948 * 16 15 14 18 18 O 1.42105 * 104.27475 * 308.92881 * 17 16 15 19 19 O 1.42091 * 104.27856 * 181.07383 * 17 16 15 20 20 C 1.81396 * 104.44582 * 64.99785 * 17 16 15 21 21 C 1.50707 * 109.47003 * 180.02562 * 20 17 16 22 22 C 1.38238 * 119.99792 * 90.00226 * 21 20 17 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98162 * 21 20 17 27 27 H 0.97002 * 120.00072 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46971 * 60.00504 * 9 7 2 29 29 H 1.08998 * 109.46984 * 300.00079 * 9 7 2 30 30 H 1.09004 * 109.46688 * 59.99945 * 10 9 7 31 31 H 1.09002 * 109.46838 * 300.00375 * 10 9 7 32 32 H 0.96998 * 120.00189 * 359.97438 * 13 11 10 33 33 H 1.08994 * 109.47265 * 59.99741 * 14 13 11 34 34 H 1.08998 * 109.46641 * 299.99384 * 14 13 11 35 35 H 1.09004 * 109.47020 * 59.99976 * 15 14 13 36 36 H 1.08998 * 109.47257 * 299.99354 * 15 14 13 37 37 H 0.97006 * 120.00065 * 345.00070 * 16 15 14 38 38 H 1.09005 * 109.47589 * 60.00672 * 20 17 16 39 39 H 1.09000 * 109.47576 * 299.99830 * 20 17 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 8 0.2790 -4.9672 0.0006 13 7 2.1656 -6.1344 -0.0016 14 6 1.4331 -7.4031 -0.0016 15 6 2.4274 -8.5660 -0.0027 16 7 1.6950 -9.8348 -0.0020 17 16 2.4802 -11.2445 -0.3742 18 8 3.1416 -10.9640 -1.6003 19 8 1.4687 -12.2396 -0.2985 20 6 3.6852 -11.4583 0.9647 21 6 4.4719 -12.7231 0.7353 22 6 5.6421 -12.6855 0.0003 23 6 6.3639 -13.8455 -0.2097 24 6 5.9160 -15.0431 0.3157 25 6 4.7430 -15.0817 1.0461 26 6 4.0236 -13.9208 1.2601 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8904 29 1 0.6247 -2.5571 0.8897 30 1 2.8726 -3.6047 0.8878 31 1 2.8713 -3.6039 -0.8923 32 1 3.1356 -6.1344 -0.0027 33 1 0.8062 -7.4607 -0.8912 34 1 0.8069 -7.4610 0.8887 35 1 3.0548 -8.5086 0.8869 36 1 3.0534 -8.5080 -0.8932 37 1 0.7499 -9.8491 0.2164 38 1 3.1611 -11.5241 1.9183 39 1 4.3648 -10.6063 0.9816 40 1 5.9923 -11.7497 -0.4098 41 1 7.2780 -13.8162 -0.7843 42 1 6.4802 -15.9493 0.1519 43 1 4.3907 -16.0180 1.4529 44 1 3.1097 -13.9501 1.8349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812469549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -97.243776 kcal Electronic energy + Delta-G solvation = -25618.016333 eV Core-core repulsion = 21661.923949 eV Total energy + Delta-G solvation = -3956.092383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79895 -39.27780 -37.54640 -36.59213 -36.30924 -33.86764 -33.62922 -33.46726 -31.45629 -31.06997 -28.61213 -27.94674 -25.60680 -23.20265 -23.11704 -22.23245 -21.53846 -19.93456 -19.66471 -18.18477 -17.53929 -17.17221 -16.70327 -16.58454 -15.94935 -15.76964 -15.74114 -15.50995 -15.43220 -14.88199 -14.55691 -14.41322 -13.97600 -13.87509 -13.36633 -13.29255 -13.20934 -12.82859 -12.65241 -12.49589 -12.38775 -12.20446 -11.95934 -11.94023 -11.84710 -11.58135 -11.50360 -11.18696 -10.92093 -10.63223 -10.08232 -9.97675 -9.69792 -9.47991 -9.25971 -9.22717 -9.06771 -8.91696 -8.33036 -5.97128 -4.01817 -0.35271 0.80788 0.84835 2.19897 3.16807 3.18590 3.31428 3.33657 3.38354 3.39735 3.49680 3.66885 3.82060 4.20485 4.30581 4.46548 4.46622 4.54817 4.59340 4.67559 4.83860 4.92566 4.95297 5.03855 5.12822 5.37776 5.39120 5.47261 5.48371 5.61201 5.84085 5.88579 5.90078 5.97288 6.19125 6.20586 6.40349 6.44600 6.58662 6.85887 7.72232 7.77513 7.84131 8.05526 8.36684 8.70169 9.06448 9.61798 11.13719 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.001603 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.597982 B =17467.468848 C =18109.324918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.532 6.532 13 N -0.745 5.745 14 C 0.113 3.887 15 C 0.102 3.898 16 N -1.117 6.117 17 S 2.612 3.388 18 O -0.946 6.946 19 O -0.950 6.950 20 C -0.585 4.585 21 C -0.095 4.095 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.105 4.105 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.422 0.578 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.168 -31.928 3.540 34.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.406 6.406 13 N -0.400 5.400 14 C -0.013 4.013 15 C -0.025 4.025 16 N -0.877 5.877 17 S 2.704 3.296 18 O -0.935 6.935 19 O -0.940 6.940 20 C -0.712 4.712 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.124 4.124 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.257 0.743 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.098 -32.293 2.745 34.594 hybrid contribution 0.843 1.159 0.827 1.655 sum 12.942 -31.133 3.571 33.905 Atomic orbital electron populations 1.69983 1.06066 1.26725 1.50011 1.25024 0.94825 0.99232 0.95267 0.86642 0.79533 0.83156 0.78524 1.20251 1.21289 1.20273 1.21182 0.92900 0.91012 1.51638 0.92625 1.18907 0.93194 0.89376 0.98660 1.21877 1.00749 0.91713 1.02606 1.21605 0.88673 0.85511 0.74269 1.90682 1.14494 1.87537 1.47920 1.46071 1.10126 1.05237 1.78605 1.21306 0.94354 0.82253 1.03362 1.21501 0.95052 0.83165 1.02805 1.55519 1.22132 1.21351 1.88709 1.05139 0.75326 0.72900 0.76238 1.93618 1.77139 1.83608 1.39170 1.93616 1.55295 1.57902 1.87176 1.29642 1.16482 1.04031 1.21067 1.18943 0.96796 0.92450 1.01545 1.21220 0.94004 0.99483 0.97633 1.21223 1.00170 0.92426 0.99708 1.21324 0.96326 0.98238 0.97040 1.21213 0.95212 0.98284 0.98885 1.21207 1.00059 0.92019 0.99146 0.92877 0.95792 0.95811 0.90136 0.90073 0.76717 0.90786 0.90963 0.91003 0.89307 0.74312 0.83749 0.83925 0.85027 0.85240 0.85488 0.85292 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.51 5.64 -27.88 -0.16 -2.67 16 11 C 0.51 9.29 7.83 -10.99 -0.09 9.20 16 12 O -0.53 -12.13 15.98 5.56 0.09 -12.05 16 13 N -0.74 -9.13 5.56 -60.29 -0.33 -9.47 16 14 C 0.11 1.18 5.82 -4.04 -0.02 1.16 16 15 C 0.10 0.69 6.25 -4.04 -0.03 0.67 16 16 N -1.12 -7.66 5.88 -10.61 -0.06 -7.73 16 17 S 2.61 21.59 5.44 -107.50 -0.58 21.00 16 18 O -0.95 -10.96 17.50 -57.54 -1.01 -11.97 16 19 O -0.95 -10.77 18.08 -57.54 -1.04 -11.81 16 20 C -0.59 -3.03 6.20 36.01 0.22 -2.81 16 21 C -0.10 -0.69 5.14 -104.62 -0.54 -1.23 16 22 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 23 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 24 C -0.11 -0.64 10.05 -39.58 -0.40 -1.04 16 25 C -0.12 -0.73 10.05 -39.58 -0.40 -1.12 16 26 C -0.11 -0.74 9.70 -39.58 -0.38 -1.12 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.40 3.47 8.47 -40.82 -0.35 3.13 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.60 7.69 -51.93 -0.40 0.20 16 37 H 0.42 2.53 8.62 -34.47 -0.30 2.24 16 38 H 0.14 0.44 8.09 -51.92 -0.42 0.02 16 39 H 0.14 0.42 8.08 -51.92 -0.42 0.00 16 40 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -39.98 392.03 -10.91 -50.89 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.49 Total: -0.83 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -3.10 Total: -13.91 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.34 Total: -43.68 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.96 Total: -35.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 21.59 SS G_CDS: -0.58 Total: 21.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.98 -10.91 -50.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812469549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.355 kcal (2) G-P(sol) polarization free energy of solvation -39.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds