Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48507 * 109.46742 * 240.00220 * 3 2 1 5 5 H 1.48493 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47087 * 120.00284 * 3 2 1 7 7 C 1.37882 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99941 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47073 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99710 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99722 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99730 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46894 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47033 * 179.97438 * 15 14 13 17 17 S 1.65602 * 120.00385 * 164.99948 * 16 15 14 18 18 O 1.42105 * 104.27475 * 308.92881 * 17 16 15 19 19 O 1.42091 * 104.27856 * 181.07383 * 17 16 15 20 20 C 1.81396 * 104.44582 * 64.99785 * 17 16 15 21 21 C 1.50707 * 109.47003 * 180.02562 * 20 17 16 22 22 C 1.38238 * 119.99792 * 90.00226 * 21 20 17 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98162 * 21 20 17 27 27 H 0.97002 * 120.00072 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46971 * 60.00504 * 9 7 2 29 29 H 1.08998 * 109.46984 * 300.00079 * 9 7 2 30 30 H 1.09004 * 109.46688 * 59.99945 * 10 9 7 31 31 H 1.09002 * 109.46838 * 300.00375 * 10 9 7 32 32 H 0.96998 * 120.00189 * 359.97438 * 13 11 10 33 33 H 1.08994 * 109.47265 * 59.99741 * 14 13 11 34 34 H 1.08998 * 109.46641 * 299.99384 * 14 13 11 35 35 H 1.09004 * 109.47020 * 59.99976 * 15 14 13 36 36 H 1.08998 * 109.47257 * 299.99354 * 15 14 13 37 37 H 0.97006 * 120.00065 * 345.00070 * 16 15 14 38 38 H 1.09005 * 109.47589 * 60.00672 * 20 17 16 39 39 H 1.09000 * 109.47576 * 299.99830 * 20 17 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 8 0.2790 -4.9672 0.0006 13 7 2.1656 -6.1344 -0.0016 14 6 1.4331 -7.4031 -0.0016 15 6 2.4274 -8.5660 -0.0027 16 7 1.6950 -9.8348 -0.0020 17 16 2.4802 -11.2445 -0.3742 18 8 3.1416 -10.9640 -1.6003 19 8 1.4687 -12.2396 -0.2985 20 6 3.6852 -11.4583 0.9647 21 6 4.4719 -12.7231 0.7353 22 6 5.6421 -12.6855 0.0003 23 6 6.3639 -13.8455 -0.2097 24 6 5.9160 -15.0431 0.3157 25 6 4.7430 -15.0817 1.0461 26 6 4.0236 -13.9208 1.2601 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8904 29 1 0.6247 -2.5571 0.8897 30 1 2.8726 -3.6047 0.8878 31 1 2.8713 -3.6039 -0.8923 32 1 3.1356 -6.1344 -0.0027 33 1 0.8062 -7.4607 -0.8912 34 1 0.8069 -7.4610 0.8887 35 1 3.0548 -8.5086 0.8869 36 1 3.0534 -8.5080 -0.8932 37 1 0.7499 -9.8491 0.2164 38 1 3.1611 -11.5241 1.9183 39 1 4.3648 -10.6063 0.9816 40 1 5.9923 -11.7497 -0.4098 41 1 7.2780 -13.8162 -0.7843 42 1 6.4802 -15.9493 0.1519 43 1 4.3907 -16.0180 1.4529 44 1 3.1097 -13.9501 1.8349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812469549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -129.024123 kcal Electronic energy + Delta-G solvation = -25619.394432 eV Core-core repulsion = 21661.923949 eV Total energy + Delta-G solvation = -3957.470483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.67413 -40.21236 -38.29345 -37.41485 -37.06622 -35.54079 -34.90858 -34.05322 -32.97000 -31.87490 -29.68396 -28.38224 -27.40146 -24.26285 -23.59382 -23.13559 -22.64229 -21.25780 -20.42961 -18.88580 -18.77692 -18.02807 -17.71395 -17.26001 -17.10016 -16.82073 -16.73185 -16.37378 -16.22872 -16.04311 -15.73090 -15.56194 -14.74275 -14.37630 -14.34539 -14.18485 -14.14277 -13.83928 -13.66358 -13.42169 -13.28599 -13.21402 -13.20751 -13.04864 -12.74528 -12.67084 -12.47662 -12.39151 -12.01569 -11.97359 -11.86912 -11.60999 -11.29808 -10.76062 -10.60995 -10.53836 -10.07192 -9.92366 -9.69801 -8.15772 -6.29727 -0.95543 0.36628 0.40550 1.43984 1.48305 1.55823 1.57677 1.74086 2.34469 2.48306 2.67839 2.83703 3.13993 3.17370 3.35941 3.61377 3.77972 4.06787 4.08017 4.13131 4.16569 4.24679 4.39172 4.46239 4.52119 4.54533 4.56958 4.60848 4.63832 4.86200 4.97666 5.00282 5.08080 5.14758 5.44942 5.45051 5.46923 5.53880 5.55019 5.66869 5.88326 5.93992 5.99946 6.20063 6.63640 6.89201 7.37644 7.40895 8.96551 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.001603 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.597982 B =17467.468848 C =18109.324918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.039 3.961 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.716 5.716 14 C 0.109 3.891 15 C 0.105 3.895 16 N -1.115 6.115 17 S 2.615 3.385 18 O -0.987 6.987 19 O -0.989 6.989 20 C -0.563 4.563 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.124 4.124 27 H 0.262 0.738 28 H -0.020 1.020 29 H -0.017 1.017 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.421 0.579 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.425 0.575 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.626 -32.439 4.572 36.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.001 3.999 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.470 6.470 13 N -0.371 5.371 14 C -0.016 4.016 15 C -0.022 4.022 16 N -0.876 5.876 17 S 2.712 3.288 18 O -0.976 6.976 19 O -0.979 6.979 20 C -0.693 4.693 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.143 4.143 27 H 0.071 0.929 28 H -0.001 1.001 29 H 0.001 0.999 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.259 0.741 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.261 0.739 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.599 -32.842 3.746 36.551 hybrid contribution -0.194 1.194 0.527 1.319 sum 15.406 -31.649 4.272 35.457 Atomic orbital electron populations 1.70173 1.08332 1.27797 1.51504 1.26137 0.95696 1.03950 0.94696 0.85377 0.78025 0.77386 0.79459 1.18777 1.21537 1.18607 1.21716 0.94079 0.91619 1.50741 0.90423 1.18714 0.93841 0.92626 0.94685 1.21641 0.99257 0.89842 1.05151 1.21341 0.87778 0.86811 0.74094 1.90670 1.16875 1.88386 1.51027 1.45670 1.11242 1.04257 1.75906 1.21419 0.95234 0.82429 1.02534 1.21582 0.94171 0.81257 1.05169 1.55319 1.22493 1.20966 1.88800 1.04809 0.75173 0.72311 0.76520 1.93563 1.77648 1.83996 1.42426 1.93560 1.57260 1.59189 1.87937 1.29464 1.15505 1.04567 1.19786 1.19203 0.97282 0.93234 1.02071 1.21534 0.94338 1.00400 0.97800 1.21560 1.00879 0.92475 0.99838 1.21666 0.96375 0.99054 0.96476 1.21548 0.95389 0.98938 0.98920 1.21519 1.00686 0.92466 0.99624 0.92945 1.00123 0.99874 0.87266 0.87606 0.74054 0.92691 0.91025 0.86818 0.88868 0.73929 0.81106 0.80897 0.83895 0.83526 0.83426 0.83573 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.13 4.26 29.85 0.13 2.26 16 10 C -0.12 -4.49 5.64 29.85 0.17 -4.32 16 11 C 0.51 18.40 7.83 87.66 0.69 19.08 16 12 O -0.59 -27.97 15.98 -3.02 -0.05 -28.02 16 13 N -0.72 -15.99 5.56 -463.07 -2.57 -18.56 16 14 C 0.11 2.12 5.82 86.38 0.50 2.63 16 15 C 0.10 1.13 6.25 86.38 0.54 1.67 16 16 N -1.12 -13.52 5.88 -187.49 -1.10 -14.62 16 17 S 2.61 40.35 5.44 -56.49 -0.31 40.05 16 18 O -0.99 -22.35 17.50 -127.65 -2.23 -24.58 16 19 O -0.99 -22.47 18.08 -127.65 -2.31 -24.78 16 20 C -0.56 -4.20 6.20 71.24 0.44 -3.76 16 21 C -0.12 -1.46 5.14 -19.86 -0.10 -1.56 16 22 C -0.12 -1.51 9.70 22.27 0.22 -1.29 16 23 C -0.13 -1.41 10.05 22.27 0.22 -1.19 16 24 C -0.12 -1.18 10.05 22.27 0.22 -0.95 16 25 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 26 C -0.12 -1.57 9.70 22.27 0.22 -1.35 16 27 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 28 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 29 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 30 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 31 H 0.11 3.46 8.14 -2.39 -0.02 3.45 16 32 H 0.42 5.71 8.47 -92.71 -0.79 4.92 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.09 0.98 7.69 -2.39 -0.02 0.96 16 37 H 0.42 4.77 8.62 -96.74 -0.83 3.93 16 38 H 0.17 0.41 8.09 -2.39 -0.02 0.39 16 39 H 0.17 0.24 8.08 -2.39 -0.02 0.22 16 40 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 43 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 44 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -92.38 392.03 -2.70 -95.08 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -0.60 Total: 8.76 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.16 Total: -20.16 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -3.39 Total: -92.15 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -4.59 Total: -77.38 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 40.35 SS G_CDS: -0.31 Total: 40.05 kcal Total: -92.38 -2.70 -95.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812469549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.943 kcal (2) G-P(sol) polarization free energy of solvation -92.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds