Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86793 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47260 * 300.00038 * 3 2 1 6 6 H 1.48506 * 109.47158 * 60.00039 * 3 2 1 7 7 C 1.38647 * 119.99319 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99320 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00790 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00406 * 185.53756 * 9 7 2 11 11 C 1.38951 * 120.02830 * 5.67523 * 10 9 7 12 12 C 1.38136 * 120.07145 * 179.97438 * 11 10 9 13 13 C 1.38197 * 120.13886 * 359.74224 * 12 11 10 14 14 C 1.38942 * 120.06335 * 0.51418 * 13 12 11 15 15 N 1.39852 * 120.03607 * 179.76802 * 14 13 12 16 16 C 1.34770 * 119.99948 * 214.75071 * 15 14 13 17 17 O 1.21614 * 120.00207 * 5.07680 * 16 15 14 18 18 C 1.47417 * 120.00137 * 185.07754 * 16 15 14 19 19 C 1.39775 * 120.99394 * 355.28008 * 18 16 15 20 20 N 1.32197 * 118.99595 * 179.97438 * 19 18 16 21 21 C 1.31967 * 121.19806 * 359.97438 * 20 19 18 22 22 C 1.50702 * 118.88491 * 180.02562 * 21 20 19 23 23 C 1.53004 * 117.49538 * 299.99995 * 22 21 20 24 24 C 1.52998 * 60.03279 * 107.47784 * 23 22 21 25 25 N 1.31668 * 122.22982 * 0.27768 * 21 20 19 26 26 C 1.32978 * 120.84419 * 359.44282 * 25 21 20 27 27 N 1.37879 * 120.63757 * 180.24830 * 26 25 21 28 28 C 1.38723 * 120.03175 * 185.64800 * 10 9 7 29 29 H 0.97003 * 119.99430 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.96824 * 359.95390 * 11 10 9 31 31 H 1.07998 * 119.92762 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.96891 * 180.25435 * 13 12 11 33 33 H 0.97003 * 120.00106 * 34.74998 * 15 14 13 34 34 H 1.08004 * 120.49976 * 359.95362 * 19 18 16 35 35 H 1.08995 * 115.55364 * 154.33350 * 22 21 20 36 36 H 1.09006 * 117.49384 * 214.97660 * 23 22 21 37 37 H 1.08991 * 117.50249 * 359.97438 * 23 22 21 38 38 H 1.08999 * 117.50053 * 107.49503 * 24 23 22 39 39 H 1.08997 * 117.50080 * 252.51903 * 24 23 22 40 40 H 0.97008 * 120.00000 * 207.89981 * 27 26 25 41 41 H 0.96996 * 120.00732 * 27.90666 * 27 26 25 42 42 H 1.08005 * 120.07252 * 0.04584 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0691 -3.5042 0.1156 11 6 3.4372 -3.4271 0.3458 12 6 4.1853 -4.5822 0.4647 13 6 3.5752 -5.8178 0.3605 14 6 2.2085 -5.9016 0.1251 15 7 1.5925 -7.1523 0.0150 16 6 0.5630 -7.3237 -0.8377 17 8 0.2292 -6.4183 -1.5778 18 6 -0.1585 -8.6087 -0.8734 19 6 0.2675 -9.6950 -0.1037 20 7 -0.4094 -10.8288 -0.1656 21 6 -1.4733 -10.9486 -0.9371 22 6 -2.2062 -12.2651 -0.9672 23 6 -1.4238 -13.4989 -1.4219 24 6 -1.7918 -13.3281 0.0533 25 7 -1.9134 -9.9584 -1.6850 26 6 -1.3003 -8.7784 -1.6839 27 7 -1.7678 -7.7429 -2.4650 28 6 1.4543 -4.7429 0.0053 29 1 -0.4849 0.8401 -0.0004 30 1 3.9163 -2.4630 0.4315 31 1 5.2485 -4.5195 0.6439 32 1 4.1621 -6.7192 0.4580 33 1 1.9062 -7.8965 0.5524 34 1 1.1367 -9.6093 0.5316 35 1 -3.2607 -12.2101 -1.2375 36 1 -1.9639 -14.2557 -1.9910 37 1 -0.3793 -13.3583 -1.6997 38 1 -2.5738 -13.9725 0.4548 39 1 -0.9893 -13.0749 0.7461 40 1 -1.1553 -7.0624 -2.7856 41 1 -2.7091 -7.6946 -2.6939 42 1 0.3911 -4.8054 -0.1739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822400877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = 53.016854 kcal Electronic energy + Delta-G solvation = -27733.740728 eV Core-core repulsion = 23681.012934 eV Total energy + Delta-G solvation = -4052.727794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52550 -40.01144 -38.66138 -37.46017 -36.60001 -35.57858 -34.15320 -33.05535 -32.27706 -30.92007 -29.45871 -28.39303 -26.03548 -25.29368 -24.12515 -22.84405 -22.66435 -21.72356 -21.27525 -20.47024 -18.65483 -18.38771 -17.78854 -17.52927 -16.94761 -16.34450 -15.88519 -15.49599 -15.24615 -15.11849 -14.82859 -14.73824 -14.52619 -14.18298 -14.08984 -13.78684 -13.54591 -12.89948 -12.56958 -12.49771 -11.98326 -11.90075 -11.78461 -11.63273 -11.61571 -11.19696 -11.18795 -11.07056 -10.83281 -10.77074 -10.45814 -10.01082 -9.87902 -9.79770 -9.49469 -9.30376 -8.85097 -8.65030 -7.75256 -7.23664 -6.45452 -4.04392 0.30135 1.06249 1.98077 2.29809 2.81401 2.95323 3.12366 3.13034 3.18513 3.19875 3.37340 3.62350 3.78440 3.96116 4.03526 4.45413 4.52826 4.54524 4.62581 4.67999 4.72708 5.05602 5.10352 5.16963 5.32305 5.32851 5.49275 5.57920 5.73786 5.77269 5.88424 5.99402 6.04068 6.14640 6.31440 6.56729 6.60189 6.79394 6.97066 7.03597 7.08686 7.30628 7.42238 7.47233 7.55725 7.73214 7.99283 8.00335 8.20727 8.99777 9.70273 10.72476 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.002213 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.788786 B =12652.217309 C =13586.129365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.058 4.058 13 C -0.234 4.234 14 C 0.176 3.824 15 N -0.662 5.662 16 C 0.574 3.426 17 O -0.515 6.515 18 C -0.311 4.311 19 C 0.218 3.782 20 N -0.559 5.559 21 C 0.409 3.591 22 C -0.107 4.107 23 C -0.154 4.154 24 C -0.150 4.150 25 N -0.573 5.573 26 C 0.492 3.508 27 N -0.816 5.816 28 C -0.185 4.185 29 H 0.270 0.730 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.404 0.596 34 H 0.169 0.831 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.429 0.571 41 H 0.406 0.594 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -23.242 -0.440 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.112 3.888 11 C -0.262 4.262 12 C -0.077 4.077 13 C -0.255 4.255 14 C 0.083 3.917 15 N -0.306 5.306 16 C 0.362 3.638 17 O -0.391 6.391 18 C -0.325 4.325 19 C 0.052 3.948 20 N -0.278 5.278 21 C 0.141 3.859 22 C -0.128 4.128 23 C -0.192 4.192 24 C -0.188 4.188 25 N -0.297 5.297 26 C 0.244 3.756 27 N -0.366 5.366 28 C -0.206 4.206 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.240 0.760 34 H 0.186 0.814 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.270 0.730 41 H 0.236 0.764 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.522 -23.151 -1.060 23.226 hybrid contribution 0.962 1.643 0.061 1.905 sum -0.560 -21.509 -1.000 21.539 Atomic orbital electron populations 1.70066 1.05972 1.27571 1.45889 1.25317 0.95863 0.98885 0.96560 0.85632 0.79135 0.80321 0.78241 1.19055 1.20142 1.20157 1.21387 0.91839 0.80752 1.52682 0.88936 1.84001 1.34239 1.11407 1.77978 1.19113 0.90171 0.87721 0.91799 1.21204 0.94294 0.99083 1.11623 1.20518 0.98407 0.91625 0.97125 1.20274 0.92087 0.97637 1.15477 1.17103 0.91035 0.83182 1.00332 1.43145 1.33638 1.11834 1.41989 1.17671 0.79720 0.86371 0.80021 1.90676 1.65307 1.42666 1.40474 1.21078 1.05069 0.98039 1.08358 1.23177 0.95036 0.86135 0.90407 1.68096 1.09610 1.25886 1.24187 1.21977 0.87095 0.92528 0.84279 1.20708 0.99171 0.84598 1.08283 1.22985 1.00898 0.97155 0.98150 1.23054 1.03898 0.99224 0.92622 1.67871 1.36477 0.99189 1.26116 1.18329 0.86473 0.86483 0.84339 1.42671 1.13688 1.26195 1.54021 1.19971 1.00361 0.88828 1.11456 0.92055 0.85380 0.86939 0.87265 0.75979 0.81377 0.85223 0.87888 0.88425 0.88126 0.86918 0.73048 0.76414 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -10.96 9.44 30.88 0.29 -10.67 16 8 H 0.09 2.39 5.29 -52.48 -0.28 2.11 16 9 O -0.17 -5.03 9.75 0.04 0.00 -5.03 16 10 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 11 C -0.24 -5.22 9.13 -39.35 -0.36 -5.58 16 12 C -0.06 -1.03 10.03 -39.63 -0.40 -1.42 16 13 C -0.23 -3.85 9.96 -39.34 -0.39 -4.24 16 14 C 0.18 3.17 6.24 -83.74 -0.52 2.65 16 15 N -0.66 -9.24 5.29 -10.85 -0.06 -9.30 16 16 C 0.57 8.74 7.49 -12.53 -0.09 8.64 16 17 O -0.52 -9.56 11.76 5.27 0.06 -9.50 16 18 C -0.31 -3.99 5.92 -104.52 -0.62 -4.61 16 19 C 0.22 2.28 10.80 -16.82 -0.18 2.10 16 20 N -0.56 -6.18 9.30 -10.45 -0.10 -6.28 16 21 C 0.41 4.71 7.31 -157.15 -1.15 3.56 16 22 C -0.11 -0.92 6.23 -91.73 -0.57 -1.49 16 23 C -0.15 -1.04 10.23 -26.73 -0.27 -1.31 16 24 C -0.15 -1.01 10.01 -26.69 -0.27 -1.28 16 25 N -0.57 -7.31 10.35 -9.75 -0.10 -7.41 16 26 C 0.49 6.54 7.83 -154.88 -1.21 5.32 16 27 N -0.82 -10.00 8.58 31.39 0.27 -9.73 16 28 C -0.18 -4.12 8.59 -39.21 -0.34 -4.45 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.75 5.70 -52.49 -0.30 2.45 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.40 3.93 6.96 -40.82 -0.28 3.65 16 34 H 0.17 1.14 6.54 -52.48 -0.34 0.80 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.85 7.53 -51.93 -0.39 0.46 16 40 H 0.43 5.79 6.20 -40.82 -0.25 5.53 16 41 H 0.41 4.09 8.95 -40.82 -0.37 3.72 16 42 H 0.13 3.02 6.53 -52.48 -0.34 2.67 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -34.08 361.66 -9.41 -43.49 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -4.23 Total: 15.45 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -6.44 Total: -7.99 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.77 Total: -57.42 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.06 Total: -14.53 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.08 -9.41 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822400877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.509 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds