Wall clock time and date at job start Sat Apr 11 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47559 * 240.00028 * 3 2 1 5 5 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47106 * 120.00264 * 3 2 1 7 7 C 1.37885 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99667 * 184.85740 * 7 2 1 9 9 C 1.50698 * 120.00060 * 4.85715 * 7 2 1 10 10 C 1.52999 * 115.55161 * 84.80679 * 9 7 2 11 11 O 1.42904 * 109.46964 * 65.13247 * 10 9 7 12 12 C 1.34917 * 117.00235 * 179.97438 * 11 10 9 13 13 O 1.21636 * 119.99648 * 0.02562 * 12 11 10 14 14 C 1.46146 * 120.00348 * 179.97438 * 12 11 10 15 15 C 1.35071 * 120.00250 * 180.02562 * 14 12 11 16 16 C 1.46921 * 119.99823 * 180.02562 * 15 14 12 17 17 C 1.39823 * 120.24165 * 5.69040 * 16 15 14 18 18 C 1.37832 * 119.93403 * 180.25777 * 17 16 15 19 19 C 1.38570 * 120.43541 * 359.74005 * 18 17 16 20 20 C 1.38073 * 120.48301 * 0.02562 * 19 18 17 21 21 C 1.39125 * 120.04600 * 359.96201 * 20 19 18 22 22 C 1.48231 * 120.20953 * 180.02562 * 21 20 19 23 23 N 1.34122 * 126.68786 * 132.13382 * 22 21 20 24 24 N 1.28983 * 107.25646 * 180.25761 * 23 22 21 25 25 N 1.28725 * 108.97312 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.32903 * 180.02562 * 25 24 23 27 27 N 1.28870 * 109.33956 * 359.97438 * 25 24 23 28 28 C 1.52995 * 117.49750 * 230.47990 * 9 7 2 29 29 C 1.53002 * 117.49898 * 299.14062 * 9 7 2 30 30 H 0.96996 * 119.99974 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47361 * 305.13245 * 10 9 7 32 32 H 1.09000 * 109.47104 * 185.12821 * 10 9 7 33 33 H 1.08001 * 120.00041 * 0.02562 * 14 12 11 34 34 H 1.07998 * 119.99918 * 0.02562 * 15 14 12 35 35 H 1.07992 * 120.02881 * 359.97111 * 17 16 15 36 36 H 1.08007 * 119.78081 * 179.76295 * 18 17 16 37 37 H 1.07997 * 119.76153 * 180.02562 * 19 18 17 38 38 H 1.07994 * 119.97342 * 179.97438 * 20 19 18 39 39 H 1.09005 * 117.50249 * 215.00402 * 28 9 7 40 40 H 1.09000 * 117.49963 * 0.02562 * 28 9 7 41 41 H 1.09003 * 117.50119 * 359.97329 * 29 9 7 42 42 H 1.08998 * 117.50219 * 144.97420 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1942 -0.0005 8 1 3.0816 -1.1959 0.0787 9 6 1.2551 -2.4968 -0.1116 10 6 0.9197 -2.9459 -1.5352 11 8 2.1287 -3.2274 -2.2432 12 6 2.0079 -3.6391 -3.5223 13 8 0.9051 -3.7551 -4.0222 14 6 3.2020 -3.9446 -4.3076 15 6 3.0810 -4.3563 -5.5883 16 6 4.2815 -4.6640 -6.3775 17 6 5.5434 -4.6476 -5.7754 18 6 6.6659 -4.9320 -6.5230 19 6 6.5531 -5.2402 -7.8693 20 6 5.3153 -5.2663 -8.4806 21 6 4.1690 -4.9827 -7.7450 22 6 2.8383 -5.0101 -8.3974 23 7 1.7344 -5.6198 -7.9408 24 7 0.7973 -5.4096 -8.8018 25 7 1.2675 -4.6999 -9.7673 26 1 0.7650 -4.4040 -10.5424 27 7 2.5102 -4.4432 -9.5424 28 6 1.5736 -3.5848 0.9158 29 6 0.2455 -2.8271 0.9896 30 1 -0.4850 0.8400 -0.0004 31 1 0.3749 -2.1528 -2.0476 32 1 0.3034 -3.8441 -1.4972 33 1 4.1812 -3.8413 -3.8638 34 1 2.1019 -4.4593 -6.0322 35 1 5.6388 -4.4077 -4.7268 36 1 7.6398 -4.9148 -6.0563 37 1 7.4398 -5.4618 -8.4446 38 1 5.2370 -5.5071 -9.5304 39 1 1.5442 -4.6207 0.5775 40 1 2.3248 -3.3583 1.6723 41 1 0.1237 -2.1024 1.7947 42 1 -0.6577 -3.3640 0.6998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822805986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:12 Heat of formation + Delta-G solvation = 110.535721 kcal Electronic energy + Delta-G solvation = -27638.829007 eV Core-core repulsion = 23588.595418 eV Total energy + Delta-G solvation = -4050.233588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.70186 -39.93184 -39.46730 -36.85775 -35.33063 -34.75511 -34.14509 -33.88171 -31.92335 -30.92947 -30.08705 -27.08520 -25.44046 -25.09110 -24.80261 -24.03097 -22.19023 -21.42185 -21.02531 -19.49594 -19.31602 -19.07726 -17.77406 -17.37245 -16.88400 -16.53054 -15.77274 -15.66391 -15.47580 -14.89746 -14.57182 -14.46992 -14.11131 -13.95765 -13.71476 -13.41783 -13.08207 -12.74574 -12.45006 -12.21717 -12.04344 -11.80420 -11.63038 -11.53754 -11.47534 -11.20456 -10.95377 -10.93495 -10.84213 -10.55980 -10.52734 -10.23315 -10.07322 -9.79779 -9.44835 -9.23678 -8.89138 -8.50428 -8.40558 -8.15877 -6.03591 -4.09634 0.15476 0.70250 0.93301 1.76545 1.88227 1.99777 3.23916 3.31454 3.34777 3.36589 3.39046 3.40320 3.55363 4.15004 4.40903 4.47280 4.52046 4.63054 4.85546 5.02501 5.04237 5.15868 5.19411 5.24794 5.29107 5.46245 5.57727 5.64005 5.76164 5.94475 6.03264 6.08193 6.10917 6.22738 6.31693 6.36752 6.39371 6.48617 6.56026 6.71934 6.78438 7.09795 7.26298 7.39679 7.55726 7.88505 7.89517 8.38632 8.48453 8.91767 9.55868 11.05119 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.002551 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.089084 B =10973.481211 C =11572.807334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.062 0.938 9 C 0.035 3.965 10 C 0.113 3.887 11 O -0.325 6.325 12 C 0.482 3.518 13 O -0.519 6.519 14 C -0.156 4.156 15 C -0.043 4.043 16 C -0.025 4.025 17 C -0.102 4.102 18 C -0.099 4.099 19 C -0.114 4.114 20 C -0.082 4.082 21 C 0.002 3.998 22 C 0.214 3.786 23 N -0.257 5.257 24 N -0.044 5.044 25 N -0.228 5.228 26 H 0.476 0.524 27 N -0.288 5.288 28 C -0.206 4.206 29 C -0.140 4.140 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.779 -10.954 -20.020 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.035 3.965 10 C 0.039 3.961 11 O -0.240 6.240 12 C 0.328 3.672 13 O -0.411 6.411 14 C -0.175 4.175 15 C -0.061 4.061 16 C -0.027 4.027 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.102 4.102 21 C -0.001 4.001 22 C -0.067 4.067 23 N -0.130 5.130 24 N -0.039 5.039 25 N -0.074 5.074 26 H 0.330 0.670 27 N -0.140 5.140 28 C -0.243 4.243 29 C -0.177 4.177 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.609 -11.004 -20.160 24.897 hybrid contribution 0.213 1.315 -0.543 1.439 sum 9.822 -9.689 -20.703 24.879 Atomic orbital electron populations 1.70002 1.05875 1.26715 1.49210 1.25025 0.94877 0.99073 0.94538 0.86652 0.79649 0.82939 0.78756 1.20115 1.21299 1.20124 1.20356 0.92850 0.88391 1.51126 0.91936 1.18765 0.99606 0.93719 0.84445 1.22523 0.82356 0.97981 0.93216 1.86219 1.39154 1.75420 1.23185 1.21190 0.89218 0.74693 0.82090 1.90845 1.28600 1.49772 1.71853 1.22426 0.97836 1.03067 0.94166 1.22457 0.97967 0.92532 0.93181 1.18857 0.93492 0.98730 0.91591 1.21496 0.90864 0.98654 1.00917 1.21280 0.98922 0.97509 0.94053 1.21201 0.97138 0.99709 0.95111 1.21032 0.91064 0.98316 0.99777 1.17276 0.86810 1.03899 0.92095 1.23602 0.95952 0.96967 0.90152 1.76299 0.96943 1.19562 1.20191 1.78990 1.21956 1.08458 0.94535 1.47766 1.06159 1.33709 1.19785 0.66984 1.75021 0.97533 1.22642 1.18764 1.23003 1.00293 0.95659 1.05351 1.22521 0.90865 1.01423 1.02915 0.92900 0.91267 0.94327 0.83898 0.84078 0.84076 0.84886 0.85011 0.85149 0.91578 0.90115 0.89146 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 12.66 55.43 0.70 -24.50 16 2 C 0.07 1.88 5.43 -17.81 -0.10 1.78 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -13.53 8.76 -34.44 -0.30 -13.83 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.89 1.68 -155.66 -0.26 0.63 16 10 C 0.11 2.77 5.20 37.16 0.19 2.96 16 11 O -0.32 -7.36 10.05 -41.09 -0.41 -7.77 16 12 C 0.48 9.83 7.87 33.90 0.27 10.10 16 13 O -0.52 -11.86 16.01 -19.37 -0.31 -12.17 16 14 C -0.16 -2.41 9.53 -37.54 -0.36 -2.77 16 15 C -0.04 -0.62 8.92 -37.19 -0.33 -0.95 16 16 C -0.02 -0.29 5.89 -104.80 -0.62 -0.91 16 17 C -0.10 -0.94 9.40 -39.14 -0.37 -1.30 16 18 C -0.10 -0.71 10.02 -39.61 -0.40 -1.10 16 19 C -0.11 -0.76 10.03 -39.52 -0.40 -1.16 16 20 C -0.08 -0.68 9.76 -39.31 -0.38 -1.07 16 21 C 0.00 0.03 5.91 -104.47 -0.62 -0.59 16 22 C 0.21 2.59 6.99 -156.26 -1.09 1.50 16 23 N -0.26 -3.52 10.87 32.13 0.35 -3.17 16 24 N -0.04 -0.52 13.47 60.35 0.81 0.29 16 25 N -0.23 -1.89 7.90 60.35 0.48 -1.41 16 26 H 0.48 1.54 8.96 -340.35 -3.05 -1.51 16 27 N -0.29 -2.97 12.41 32.15 0.40 -2.58 16 28 C -0.21 -4.58 9.96 -26.69 -0.27 -4.85 16 29 C -0.14 -3.33 9.15 -26.69 -0.24 -3.57 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.86 8.13 -51.93 -0.42 1.44 16 32 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.14 1.77 6.11 -52.49 -0.32 1.45 16 34 H 0.14 2.32 5.52 -52.49 -0.29 2.03 16 35 H 0.14 1.12 6.21 -52.49 -0.33 0.80 16 36 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.09 2.27 8.14 -51.93 -0.42 1.85 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -34.49 374.60 -9.97 -44.46 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.33 Total: 0.07 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -5.27 Total: -15.13 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 2.74 Total: -31.36 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.72 Total: -19.95 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.49 -9.97 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822805986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.992 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds