Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 N 1.32900 * 119.81281 * 30.68847 * 3 2 1 5 5 C 1.31448 * 121.69801 * 180.02562 * 4 3 2 6 6 C 1.38689 * 121.11613 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.25280 * 179.70658 * 6 5 4 8 8 F 1.39900 * 109.47200 * 0.02562 * 7 6 5 9 9 F 1.39902 * 109.47406 * 120.00489 * 7 6 5 10 10 F 1.39899 * 109.47582 * 240.00373 * 7 6 5 11 11 C 1.38328 * 119.49791 * 359.97438 * 6 5 4 12 12 C 1.39434 * 118.43439 * 0.02562 * 11 6 5 13 13 N 1.39023 * 120.56275 * 180.02562 * 12 11 6 14 14 C 1.46953 * 111.00123 * 63.77443 * 13 12 11 15 15 C 1.53049 * 109.36738 * 176.81111 * 14 13 12 16 16 N 1.46957 * 109.36430 * 58.40522 * 15 14 13 17 17 C 1.46897 * 111.00304 * 176.81087 * 16 15 14 18 18 C 1.50702 * 109.46966 * 58.98053 * 17 16 15 19 19 H 1.08003 * 120.00158 * 5.00868 * 18 17 16 20 20 C 1.37876 * 119.99845 * 185.00874 * 18 17 16 21 21 N 1.31516 * 120.00430 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99725 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47360 * 120.00265 * 22 20 18 25 25 H 1.48507 * 109.46757 * 239.99805 * 22 20 18 26 26 C 1.46961 * 110.87831 * 300.68032 * 16 15 14 27 27 C 1.46965 * 111.00001 * 299.97760 * 13 12 11 28 28 H 1.08007 * 119.44116 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.78953 * 179.97438 * 11 6 5 30 30 H 1.08993 * 109.49314 * 296.78181 * 14 13 12 31 31 H 1.09007 * 109.48607 * 56.84722 * 14 13 12 32 32 H 1.09003 * 109.49060 * 298.44356 * 15 14 13 33 33 H 1.09000 * 109.50814 * 178.38374 * 15 14 13 34 34 H 1.09006 * 109.47355 * 178.97641 * 17 16 15 35 35 H 1.08994 * 109.47574 * 298.97741 * 17 16 15 36 36 H 0.96998 * 120.00139 * 179.97438 * 21 20 18 37 37 H 1.08993 * 109.49162 * 299.35176 * 26 16 15 38 38 H 1.09007 * 109.48861 * 179.28571 * 26 16 15 39 39 H 1.08997 * 109.48620 * 303.16001 * 27 13 12 40 40 H 1.08998 * 109.48432 * 63.19944 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2291 -0.9907 -0.5885 5 6 4.5429 -1.0275 -0.6102 6 6 5.2979 -0.0275 -0.0156 7 6 6.8032 -0.0927 -0.0463 8 9 7.2062 -1.2468 -0.7265 9 9 7.3055 1.0352 -0.7041 10 9 7.2953 -0.1267 1.2629 11 6 4.6587 1.0273 0.6106 12 6 3.2645 1.0465 0.6218 13 7 2.5767 2.0857 1.2381 14 6 2.8432 3.3651 0.5661 15 6 2.0083 4.4669 1.2230 16 7 2.3434 4.5460 2.6517 17 6 1.6167 5.6440 3.3029 18 6 0.1336 5.4283 3.1447 19 1 -0.2345 4.5229 2.6851 20 6 -0.7534 6.3869 3.5866 21 7 -0.3053 7.4893 4.1467 22 14 -2.5918 6.1192 3.3911 23 1 -2.8343 4.8088 2.7361 24 1 -3.2389 6.1324 4.7277 25 1 -3.1636 7.2042 2.5537 26 6 2.0769 3.2665 3.3237 27 6 2.9118 2.1647 2.6668 28 1 5.0430 -1.8510 -1.0985 29 1 5.2260 1.8170 1.0806 30 1 3.9018 3.6091 0.6551 31 1 2.5754 3.2852 -0.4875 32 1 0.9489 4.2366 1.1102 33 1 2.2257 5.4222 0.7451 34 1 1.8692 5.6685 4.3630 35 1 1.8976 6.5902 2.8406 36 1 -0.9294 8.1638 4.4572 37 1 1.0183 3.0225 3.2347 38 1 2.3447 3.3464 4.3773 39 1 2.6941 1.2095 3.1447 40 1 3.9712 2.3946 2.7796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866218296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -56.394866 kcal Electronic energy + Delta-G solvation = -29434.872947 eV Core-core repulsion = 24835.543964 eV Total energy + Delta-G solvation = -4599.328982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.62126 -48.14687 -48.06156 -41.41113 -38.90881 -36.66989 -35.75948 -33.68225 -32.66607 -31.05695 -30.65480 -27.82599 -27.32238 -25.37247 -24.40131 -23.25168 -22.92887 -21.64617 -20.05041 -19.50195 -18.93731 -18.86684 -18.78136 -17.23999 -16.68122 -16.23141 -15.54081 -15.32779 -14.94488 -14.89730 -14.79389 -14.51314 -14.49105 -14.36937 -14.33642 -14.21458 -14.18104 -13.86752 -13.38729 -13.21900 -13.12783 -13.12433 -12.89444 -12.65712 -12.18039 -11.95158 -11.32577 -11.07152 -10.99092 -10.77458 -10.72386 -10.58814 -10.34903 -10.26815 -9.92454 -9.64998 -9.57224 -8.77186 -8.49057 -7.33521 -6.09017 -4.18009 -0.28491 0.41189 2.06910 2.31179 2.43933 2.98968 3.23620 3.24146 3.32880 3.32986 3.38120 3.38217 3.57187 3.91057 4.03996 4.17245 4.37337 4.44192 4.48296 4.82309 5.00181 5.13775 5.20998 5.22314 5.24892 5.45659 5.52559 5.60937 5.65609 5.88124 6.02148 6.40074 6.58574 6.65341 6.76807 6.83805 7.08445 7.15324 7.29451 7.44747 7.82101 7.90405 8.11782 8.20588 8.92168 9.49884 10.96355 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.002959 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.682594 B = 9461.632662 C =10557.627935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C 0.270 3.730 3 C 0.243 3.757 4 N -0.441 5.441 5 C 0.151 3.849 6 C -0.209 4.209 7 C 0.516 3.484 8 F -0.172 7.172 9 F -0.171 7.171 10 F -0.171 7.171 11 C -0.051 4.051 12 C 0.105 3.895 13 N -0.505 5.505 14 C 0.061 3.939 15 C 0.064 3.936 16 N -0.542 5.542 17 C 0.188 3.812 18 C -0.551 4.551 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.890 5.890 22 Si 0.887 3.113 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.062 3.938 27 C 0.061 3.939 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.173 -16.239 -9.053 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.042 5.042 2 C -0.048 4.048 3 C 0.104 3.896 4 N -0.149 5.149 5 C -0.010 4.010 6 C -0.214 4.214 7 C 0.461 3.539 8 F -0.154 7.154 9 F -0.152 7.152 10 F -0.152 7.152 11 C -0.079 4.079 12 C 0.005 3.995 13 N -0.228 5.228 14 C -0.064 4.064 15 C -0.065 4.065 16 N -0.267 5.267 17 C 0.062 3.938 18 C -0.590 4.590 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.715 3.285 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.067 4.067 27 C -0.064 4.064 28 H 0.200 0.800 29 H 0.176 0.824 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.886 -16.689 -9.340 23.635 hybrid contribution 0.064 0.660 0.373 0.761 sum 13.950 -16.029 -8.967 23.064 Atomic orbital electron populations 1.81250 1.11247 1.06222 1.05496 1.24375 0.91075 0.94270 0.95063 1.16651 0.86948 0.90732 0.95220 1.67806 1.09244 1.22643 1.15254 1.22704 0.88262 0.96369 0.93622 1.21230 0.92805 1.00507 1.06866 1.18012 0.87659 0.74048 0.74179 1.93192 1.91979 1.50031 1.80166 1.93262 1.89043 1.51780 1.81109 1.93260 1.89373 1.96089 1.36465 1.22117 0.95104 0.96653 0.94032 1.19655 0.89791 0.94050 0.96022 1.59684 1.55389 1.03542 1.04152 1.22462 0.99529 0.86761 0.97658 1.21937 0.98292 0.96094 0.90154 1.62748 1.57605 1.04630 1.01701 1.19741 0.90867 0.88649 0.94506 1.21777 0.92582 1.04375 1.40267 0.92257 1.24945 0.98876 0.95004 0.94825 1.69946 1.34684 1.08200 1.40048 0.86614 0.85681 0.78330 0.77902 1.19728 1.20911 1.20910 1.21952 0.98450 0.88784 0.97473 1.22449 0.99117 1.00222 0.84648 0.80031 0.82386 0.93389 0.90616 0.92783 0.90508 0.95314 0.94586 0.92816 0.93032 0.90575 0.90599 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.93 18.54 41.84 0.78 -5.15 16 2 C 0.27 3.77 15.02 -22.47 -0.34 3.43 16 3 C 0.24 2.76 6.61 -84.74 -0.56 2.20 16 4 N -0.44 -4.38 10.27 -10.92 -0.11 -4.49 16 5 C 0.15 1.11 10.58 -17.55 -0.19 0.93 16 6 C -0.21 -1.57 5.39 -104.42 -0.56 -2.13 16 7 C 0.52 3.77 3.32 36.01 0.12 3.89 16 8 F -0.17 -1.17 15.99 2.25 0.04 -1.13 16 9 F -0.17 -1.40 17.24 2.25 0.04 -1.36 16 10 F -0.17 -1.39 17.24 2.25 0.04 -1.35 16 11 C -0.05 -0.44 8.33 -39.10 -0.33 -0.76 16 12 C 0.10 1.13 4.71 -83.42 -0.39 0.74 16 13 N -0.51 -6.65 4.05 -170.59 -0.69 -7.35 16 14 C 0.06 0.82 5.36 -3.77 -0.02 0.80 16 15 C 0.06 1.14 5.24 -3.77 -0.02 1.12 16 16 N -0.54 -10.54 4.92 -235.91 -1.16 -11.70 16 17 C 0.19 4.56 5.14 -4.98 -0.03 4.53 16 18 C -0.55 -14.62 7.66 -34.44 -0.26 -14.88 16 19 H 0.06 1.59 5.82 -52.48 -0.31 1.29 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.06 1.09 5.32 -3.77 -0.02 1.07 16 27 C 0.06 0.81 5.31 -3.76 -0.02 0.79 16 28 H 0.18 0.82 7.15 -52.48 -0.38 0.44 16 29 H 0.16 1.22 7.20 -52.49 -0.38 0.84 16 30 H 0.05 0.58 7.50 -51.93 -0.39 0.19 16 31 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.03 0.75 8.12 -51.93 -0.42 0.32 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.05 1.04 6.78 -51.93 -0.35 0.69 16 38 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 39 H 0.08 0.91 8.13 -51.93 -0.42 0.48 16 40 H 0.05 0.57 7.29 -51.93 -0.38 0.19 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -29.41 351.29 -6.97 -36.38 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -4.19 Total: -4.05 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.71 Total: 3.44 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.45 Total: -53.55 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.11 Total: -3.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.41 -6.97 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866218296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.020 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds