Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 N 1.32900 * 119.81281 * 30.68847 * 3 2 1 5 5 C 1.31448 * 121.69801 * 180.02562 * 4 3 2 6 6 C 1.38689 * 121.11613 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.25280 * 179.70658 * 6 5 4 8 8 F 1.39900 * 109.47200 * 0.02562 * 7 6 5 9 9 F 1.39902 * 109.47406 * 120.00489 * 7 6 5 10 10 F 1.39899 * 109.47582 * 240.00373 * 7 6 5 11 11 C 1.38328 * 119.49791 * 359.97438 * 6 5 4 12 12 C 1.39434 * 118.43439 * 0.02562 * 11 6 5 13 13 N 1.39023 * 120.56275 * 180.02562 * 12 11 6 14 14 C 1.46953 * 111.00123 * 63.77443 * 13 12 11 15 15 C 1.53049 * 109.36738 * 176.81111 * 14 13 12 16 16 N 1.46957 * 109.36430 * 58.40522 * 15 14 13 17 17 C 1.46897 * 111.00304 * 176.81087 * 16 15 14 18 18 C 1.50702 * 109.46966 * 58.98053 * 17 16 15 19 19 H 1.08003 * 120.00158 * 5.00868 * 18 17 16 20 20 C 1.37876 * 119.99845 * 185.00874 * 18 17 16 21 21 N 1.31516 * 120.00430 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99725 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47360 * 120.00265 * 22 20 18 25 25 H 1.48507 * 109.46757 * 239.99805 * 22 20 18 26 26 C 1.46961 * 110.87831 * 300.68032 * 16 15 14 27 27 C 1.46965 * 111.00001 * 299.97760 * 13 12 11 28 28 H 1.08007 * 119.44116 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.78953 * 179.97438 * 11 6 5 30 30 H 1.08993 * 109.49314 * 296.78181 * 14 13 12 31 31 H 1.09007 * 109.48607 * 56.84722 * 14 13 12 32 32 H 1.09003 * 109.49060 * 298.44356 * 15 14 13 33 33 H 1.09000 * 109.50814 * 178.38374 * 15 14 13 34 34 H 1.09006 * 109.47355 * 178.97641 * 17 16 15 35 35 H 1.08994 * 109.47574 * 298.97741 * 17 16 15 36 36 H 0.96998 * 120.00139 * 179.97438 * 21 20 18 37 37 H 1.08993 * 109.49162 * 299.35176 * 26 16 15 38 38 H 1.09007 * 109.48861 * 179.28571 * 26 16 15 39 39 H 1.08997 * 109.48620 * 303.16001 * 27 13 12 40 40 H 1.08998 * 109.48432 * 63.19944 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2291 -0.9907 -0.5885 5 6 4.5429 -1.0275 -0.6102 6 6 5.2979 -0.0275 -0.0156 7 6 6.8032 -0.0927 -0.0463 8 9 7.2062 -1.2468 -0.7265 9 9 7.3055 1.0352 -0.7041 10 9 7.2953 -0.1267 1.2629 11 6 4.6587 1.0273 0.6106 12 6 3.2645 1.0465 0.6218 13 7 2.5767 2.0857 1.2381 14 6 2.8432 3.3651 0.5661 15 6 2.0083 4.4669 1.2230 16 7 2.3434 4.5460 2.6517 17 6 1.6167 5.6440 3.3029 18 6 0.1336 5.4283 3.1447 19 1 -0.2345 4.5229 2.6851 20 6 -0.7534 6.3869 3.5866 21 7 -0.3053 7.4893 4.1467 22 14 -2.5918 6.1192 3.3911 23 1 -2.8343 4.8088 2.7361 24 1 -3.2389 6.1324 4.7277 25 1 -3.1636 7.2042 2.5537 26 6 2.0769 3.2665 3.3237 27 6 2.9118 2.1647 2.6668 28 1 5.0430 -1.8510 -1.0985 29 1 5.2260 1.8170 1.0806 30 1 3.9018 3.6091 0.6551 31 1 2.5754 3.2852 -0.4875 32 1 0.9489 4.2366 1.1102 33 1 2.2257 5.4222 0.7451 34 1 1.8692 5.6685 4.3630 35 1 1.8976 6.5902 2.8406 36 1 -0.9294 8.1638 4.4572 37 1 1.0183 3.0225 3.2347 38 1 2.3447 3.3464 4.3773 39 1 2.6941 1.2095 3.1447 40 1 3.9712 2.3946 2.7796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866218296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -75.719000 kcal Electronic energy + Delta-G solvation = -29435.710904 eV Core-core repulsion = 24835.543964 eV Total energy + Delta-G solvation = -4600.166939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.19256 -48.69967 -48.65290 -42.23324 -40.08080 -37.76366 -37.15508 -34.65042 -34.38604 -32.17395 -31.91636 -29.33387 -28.12121 -26.91976 -25.25881 -24.53914 -24.09780 -23.04015 -20.97386 -20.69690 -19.55683 -19.52051 -19.50938 -18.50652 -17.92464 -17.50322 -16.72020 -16.52612 -16.08818 -15.87971 -15.66663 -15.59621 -15.42328 -15.37676 -15.06536 -15.00821 -14.92316 -14.78458 -14.68912 -14.45482 -14.11136 -14.06616 -14.04291 -13.87929 -13.57837 -13.30003 -13.03461 -12.84865 -12.60573 -12.37088 -12.21644 -11.88749 -11.80953 -11.57855 -11.34432 -11.13843 -10.63439 -10.39776 -9.75760 -9.08272 -8.19302 -6.37106 -1.05103 -0.28550 1.30646 1.33876 1.39852 1.44616 1.46742 1.48116 2.16877 2.33577 2.39838 2.46740 2.62296 2.90173 3.06231 3.30878 3.32974 3.43024 3.44465 3.66748 3.71790 4.01598 4.12114 4.25639 4.29780 4.41206 4.42344 4.57368 4.69294 4.76474 4.85583 5.02657 5.07218 5.18747 5.24152 5.32666 5.69076 5.71682 5.88506 6.01316 6.19267 6.24848 6.35111 6.46448 6.83845 7.34258 8.83225 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.002959 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.682594 B = 9461.632662 C =10557.627935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.288 3.712 3 C 0.231 3.769 4 N -0.451 5.451 5 C 0.166 3.834 6 C -0.196 4.196 7 C 0.524 3.476 8 F -0.167 7.167 9 F -0.174 7.174 10 F -0.174 7.174 11 C -0.039 4.039 12 C 0.101 3.899 13 N -0.523 5.523 14 C 0.074 3.926 15 C 0.065 3.935 16 N -0.534 5.534 17 C 0.201 3.799 18 C -0.553 4.553 19 H 0.050 0.950 20 C 0.017 3.983 21 N -0.922 5.922 22 Si 0.948 3.052 23 H -0.276 1.276 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.063 3.937 27 C 0.073 3.927 28 H 0.214 0.786 29 H 0.174 0.826 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.008 0.992 35 H 0.011 0.989 36 H 0.265 0.735 37 H 0.017 0.983 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.299 -18.064 -10.071 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.029 4.029 3 C 0.094 3.906 4 N -0.160 5.160 5 C 0.005 3.995 6 C -0.201 4.201 7 C 0.469 3.531 8 F -0.148 7.148 9 F -0.155 7.155 10 F -0.155 7.155 11 C -0.067 4.067 12 C 0.001 3.999 13 N -0.246 5.246 14 C -0.052 4.052 15 C -0.064 4.064 16 N -0.258 5.258 17 C 0.074 3.926 18 C -0.592 4.592 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.562 5.562 22 Si 0.774 3.226 23 H -0.201 1.201 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.066 4.066 27 C -0.053 4.053 28 H 0.231 0.769 29 H 0.191 0.809 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.017 -18.533 -10.367 26.599 hybrid contribution -0.465 1.160 0.654 1.411 sum 15.553 -17.373 -9.713 25.260 Atomic orbital electron populations 1.81252 1.12880 1.08023 1.07506 1.24877 0.91762 0.92734 0.93508 1.16545 0.85652 0.91796 0.96627 1.67837 1.10429 1.22232 1.15487 1.23226 0.87253 0.96734 0.92281 1.21256 0.93040 0.99938 1.05866 1.17848 0.87175 0.74091 0.74029 1.93211 1.91887 1.49669 1.80009 1.93265 1.89053 1.52046 1.81166 1.93264 1.89378 1.96105 1.36755 1.22170 0.93895 0.97166 0.93453 1.19398 0.90478 0.93246 0.96817 1.59470 1.56920 1.04014 1.04163 1.22301 0.99683 0.85460 0.97732 1.21930 0.97238 0.97940 0.89270 1.62678 1.56145 1.04390 1.02568 1.19392 0.90245 0.89555 0.93405 1.21983 0.93944 1.03831 1.39477 0.93146 1.25685 1.02958 0.94891 0.94751 1.70040 1.36095 1.08982 1.41092 0.85656 0.80908 0.77977 0.78021 1.20112 1.20183 1.20197 1.21970 0.97438 0.89110 0.98098 1.22310 0.99270 0.98981 0.84696 0.76916 0.80884 0.91061 0.89139 0.96334 0.90947 0.97414 0.97041 0.92564 0.96500 0.90630 0.88945 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.87 18.54 19.00 0.35 -13.52 16 2 C 0.29 7.94 15.02 88.33 1.33 9.27 16 3 C 0.23 4.80 6.61 40.70 0.27 5.07 16 4 N -0.45 -7.70 10.27 -188.47 -1.94 -9.64 16 5 C 0.17 1.78 10.58 84.86 0.90 2.67 16 6 C -0.20 -2.14 5.39 -19.73 -0.11 -2.24 16 7 C 0.52 5.56 3.32 71.24 0.24 5.79 16 8 F -0.17 -1.58 15.99 44.97 0.72 -0.86 16 9 F -0.17 -2.21 17.24 44.97 0.78 -1.43 16 10 F -0.17 -2.19 17.24 44.97 0.78 -1.42 16 11 C -0.04 -0.52 8.33 22.58 0.19 -0.33 16 12 C 0.10 1.90 4.71 38.77 0.18 2.08 16 13 N -0.52 -12.89 4.05 -693.61 -2.81 -15.70 16 14 C 0.07 1.85 5.36 86.31 0.46 2.31 16 15 C 0.07 2.33 5.24 86.31 0.45 2.78 16 16 N -0.53 -21.08 4.92 -900.28 -4.43 -25.51 16 17 C 0.20 10.15 5.14 85.56 0.44 10.59 16 18 C -0.55 -30.43 7.66 25.60 0.20 -30.23 16 19 H 0.05 2.83 5.82 -2.91 -0.02 2.81 16 20 C 0.02 0.95 5.46 84.65 0.46 1.41 16 21 N -0.92 -54.26 13.29 21.45 0.28 -53.98 16 22 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 C 0.06 2.20 5.32 86.31 0.46 2.66 16 27 C 0.07 1.80 5.31 86.31 0.46 2.25 16 28 H 0.21 0.90 7.15 -2.91 -0.02 0.87 16 29 H 0.17 1.84 7.20 -2.91 -0.02 1.82 16 30 H 0.07 1.48 7.50 -2.39 -0.02 1.47 16 31 H 0.09 2.03 8.13 -2.38 -0.02 2.01 16 32 H 0.02 0.79 6.62 -2.39 -0.02 0.77 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 34 H 0.01 0.42 8.12 -2.38 -0.02 0.40 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.02 0.70 6.78 -2.39 -0.02 0.69 16 38 H 0.08 2.62 8.12 -2.38 -0.02 2.60 16 39 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16 40 H 0.07 1.46 7.29 -2.39 -0.02 1.44 16 Total: -1.00 -66.30 351.29 2.79 -63.51 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: 1.11 Total: -2.36 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.92 Total: 14.10 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -8.54 Total: -118.34 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 2.27 Total: -3.71 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.30 2.79 -63.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866218296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.212 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds