Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39295 * 119.69242 * 151.91887 * 3 2 1 5 5 C 1.38696 * 119.21718 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.70148 * 180.02562 * 5 4 3 7 7 F 1.39894 * 109.47550 * 269.97909 * 6 5 4 8 8 F 1.39907 * 109.47101 * 29.98353 * 6 5 4 9 9 F 1.39904 * 109.47041 * 149.97806 * 6 5 4 10 10 C 1.38365 * 118.59982 * 0.02562 * 5 4 3 11 11 C 1.39373 * 119.31713 * 359.97438 * 10 5 4 12 12 N 1.38985 * 119.62628 * 179.97438 * 11 10 5 13 13 C 1.46961 * 110.99546 * 179.97438 * 12 11 10 14 14 C 1.53059 * 109.36302 * 183.18734 * 13 12 11 15 15 N 1.46952 * 109.36370 * 301.60193 * 14 13 12 16 16 C 1.46906 * 110.99889 * 183.18679 * 15 14 13 17 17 C 1.50701 * 109.46965 * 170.00017 * 16 15 14 18 18 H 1.08005 * 120.00268 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99915 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99666 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00290 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46970 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47088 * 119.99589 * 21 19 17 24 24 H 1.48494 * 109.47293 * 239.99660 * 21 19 17 25 25 C 1.46961 * 110.88410 * 59.32054 * 15 14 13 26 26 C 1.46955 * 111.00361 * 303.79879 * 12 11 10 27 27 N 1.32131 * 120.73893 * 0.25662 * 11 10 5 28 28 H 1.07993 * 120.39270 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.33960 * 179.97438 * 10 5 4 30 30 H 1.09003 * 109.48904 * 63.22366 * 13 12 11 31 31 H 1.08997 * 109.51213 * 303.16652 * 13 12 11 32 32 H 1.08999 * 109.48651 * 181.63251 * 14 13 12 33 33 H 1.08996 * 109.48556 * 61.57139 * 14 13 12 34 34 H 1.08993 * 109.47164 * 289.99960 * 16 15 14 35 35 H 1.08996 * 109.46920 * 49.99994 * 16 15 14 36 36 H 0.97001 * 119.99343 * 180.02562 * 20 19 17 37 37 H 1.09003 * 109.48904 * 60.64354 * 25 15 14 38 38 H 1.09002 * 109.49205 * 180.70887 * 25 15 14 39 39 H 1.09008 * 109.48713 * 296.78316 * 26 12 11 40 40 H 1.09002 * 109.48661 * 56.82278 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2574 1.0686 -0.5696 5 6 4.6443 1.0593 -0.5637 6 6 5.4240 2.1975 -1.1701 7 9 5.6665 1.9289 -2.5214 8 9 4.6871 3.3811 -1.0547 9 9 6.6422 2.3391 -0.4969 10 6 5.2971 -0.0171 0.0107 11 6 4.5475 -1.0538 0.5636 12 7 5.1965 -2.1383 1.1418 13 6 4.2291 -3.1142 1.6630 14 6 4.9805 -4.2510 2.3600 15 7 5.9007 -4.8843 1.4051 16 6 6.5866 -6.0306 2.0162 17 6 7.3275 -6.7984 0.9519 18 1 7.2920 -6.4681 -0.0758 19 6 8.0498 -7.9231 1.2899 20 7 8.0926 -8.3256 2.5413 21 14 8.9688 -8.8744 -0.0292 22 1 8.7625 -8.2197 -1.3460 23 1 10.4183 -8.8931 0.2932 24 1 8.4558 -10.2668 -0.0834 25 6 6.8680 -3.9084 0.8839 26 6 6.1171 -2.7713 0.1871 27 7 3.2268 -1.0198 0.5394 28 1 2.7185 1.8940 -1.0106 29 1 6.3763 -0.0534 0.0303 30 1 3.6407 -3.5185 0.8393 31 1 3.5669 -2.6246 2.3769 32 1 4.2664 -4.9906 2.7220 33 1 5.5474 -3.8506 3.2004 34 1 7.2934 -5.6739 2.7653 35 1 5.8529 -6.6825 2.4902 36 1 8.6011 -9.1166 2.7791 37 1 7.4564 -3.5041 1.7076 38 1 7.5301 -4.3983 0.1698 39 1 5.5505 -3.1717 -0.6537 40 1 6.8310 -2.0314 -0.1749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866218320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -51.827406 kcal Electronic energy + Delta-G solvation = -28874.297419 eV Core-core repulsion = 24275.166497 eV Total energy + Delta-G solvation = -4599.130922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.64364 -48.15194 -48.09999 -41.40816 -38.88453 -36.98346 -35.51173 -33.97804 -32.70506 -31.11648 -30.79448 -28.00061 -27.30942 -25.38469 -25.19764 -23.15591 -22.66351 -21.52338 -20.14646 -19.49362 -18.99911 -18.96694 -17.84400 -17.13776 -16.61357 -16.38369 -16.29940 -15.55181 -14.94418 -14.87748 -14.82439 -14.55943 -14.52630 -14.34393 -14.31759 -14.25278 -14.23535 -13.81968 -13.73487 -13.54510 -13.27686 -13.03283 -12.84853 -12.78088 -12.25530 -11.91024 -11.39571 -11.10580 -10.95491 -10.93579 -10.82282 -10.64553 -10.53778 -10.28926 -10.16287 -9.87541 -9.25565 -8.53569 -8.48214 -7.39827 -6.09668 -4.11770 -0.07957 0.27522 1.94105 2.08576 2.23562 2.87715 3.10374 3.17707 3.26469 3.33456 3.34528 3.38094 3.66631 3.87968 4.19943 4.22569 4.34733 4.35753 4.64930 4.74391 4.87127 5.01194 5.20211 5.25569 5.27951 5.43498 5.48684 5.56013 5.66577 5.77441 5.99464 6.26525 6.37365 6.42232 6.51544 6.79834 6.91132 7.16818 7.23998 7.26682 7.70157 7.96547 8.06933 8.42710 8.95603 9.53126 11.01133 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.002650 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.086429 B =10561.822513 C =11805.365598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C 0.267 3.733 3 C 0.231 3.769 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.515 3.485 7 F -0.168 7.168 8 F -0.171 7.171 9 F -0.168 7.168 10 C -0.111 4.111 11 C 0.341 3.659 12 N -0.471 5.471 13 C 0.069 3.931 14 C 0.051 3.949 15 N -0.539 5.539 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.065 3.935 26 C 0.059 3.941 27 N -0.469 5.469 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.034 0.966 34 H -0.006 1.006 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.035 0.965 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 22.287 -6.278 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.053 5.053 2 C -0.051 4.051 3 C 0.091 3.909 4 C -0.140 4.140 5 C -0.124 4.124 6 C 0.461 3.539 7 F -0.150 7.150 8 F -0.152 7.152 9 F -0.149 7.149 10 C -0.135 4.135 11 C 0.106 3.894 12 N -0.187 5.187 13 C -0.057 4.057 14 C -0.078 4.078 15 N -0.264 5.264 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.064 4.064 26 C -0.067 4.067 27 N -0.186 5.186 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.012 0.988 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.696 21.365 -5.777 23.432 hybrid contribution 1.642 0.266 -0.737 1.819 sum -6.054 21.631 -6.514 23.388 Atomic orbital electron populations 1.81279 1.11273 1.06321 1.06430 1.24761 0.91374 0.94320 0.94621 1.15890 0.86160 0.91200 0.97600 1.21516 0.92660 0.99602 1.00212 1.20051 0.94283 0.95683 1.02356 1.17965 0.77769 0.81692 0.76494 1.93270 1.94494 1.93729 1.33472 1.93229 1.76803 1.49414 1.95773 1.93247 1.45673 1.96018 1.80001 1.21664 1.02742 0.92004 0.97136 1.19787 0.86562 0.93561 0.89500 1.59351 1.18556 1.08800 1.32002 1.22216 0.92592 0.90985 0.99924 1.22180 0.96638 0.94871 0.94076 1.62334 1.19538 1.08285 1.36275 1.19721 0.92765 0.86473 0.94145 1.21167 1.29130 1.09984 0.94570 0.91803 1.24993 0.96740 0.97352 0.95475 1.69967 1.41881 1.25019 1.16757 0.86451 0.79343 0.79848 0.81827 1.19641 1.21082 1.21010 1.22048 0.94044 0.90807 0.99463 1.22610 0.94409 0.96655 0.92982 1.67594 1.09353 1.24517 1.17089 0.82533 0.82117 0.91895 0.89711 0.90119 0.94822 0.98849 0.95010 0.92896 0.94664 0.88452 0.92151 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.58 18.54 41.83 0.78 -3.81 16 2 C 0.27 2.78 15.53 -22.48 -0.35 2.43 16 3 C 0.23 2.17 6.58 -85.08 -0.56 1.61 16 4 C -0.12 -0.84 9.16 -39.02 -0.36 -1.20 16 5 C -0.11 -0.87 5.47 -104.41 -0.57 -1.44 16 6 C 0.52 3.79 3.39 36.00 0.12 3.91 16 7 F -0.17 -1.34 17.30 2.25 0.04 -1.30 16 8 F -0.17 -1.25 16.55 2.25 0.04 -1.21 16 9 F -0.17 -1.34 16.54 2.25 0.04 -1.30 16 10 C -0.11 -0.96 8.59 -39.11 -0.34 -1.29 16 11 C 0.34 3.74 6.41 -155.18 -0.99 2.74 16 12 N -0.47 -5.97 4.73 -173.03 -0.82 -6.79 16 13 C 0.07 0.96 4.78 -3.76 -0.02 0.94 16 14 C 0.05 0.85 5.61 -3.77 -0.02 0.83 16 15 N -0.54 -10.61 4.70 -235.91 -1.11 -11.72 16 16 C 0.19 4.75 4.72 -4.97 -0.02 4.73 16 17 C -0.51 -13.54 8.47 -34.44 -0.29 -13.83 16 18 H 0.06 1.66 7.13 -52.48 -0.37 1.29 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.07 1.10 5.43 -3.77 -0.02 1.08 16 26 C 0.06 0.75 5.37 -3.77 -0.02 0.73 16 27 N -0.47 -5.31 8.61 -10.35 -0.09 -5.40 16 28 H 0.16 0.76 7.69 -52.49 -0.40 0.36 16 29 H 0.16 1.16 6.79 -52.49 -0.36 0.80 16 30 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 35 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.76 6.79 -51.93 -0.35 1.41 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 40 H 0.08 0.82 6.78 -51.93 -0.35 0.47 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -29.21 354.06 -7.94 -37.14 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.32 Total: -4.34 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -3.54 Total: 2.67 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.51 Total: -52.79 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.11 Total: -3.81 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.21 -7.94 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866218320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.683 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds