Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46757 * 180.02562 * 9 7 2 11 11 C 1.38233 * 119.99900 * 269.72321 * 10 9 7 12 12 C 1.38238 * 120.00000 * 179.79044 * 11 10 9 13 13 C 1.38230 * 119.99886 * 0.44043 * 12 11 10 14 14 S 1.76195 * 120.00217 * 179.83303 * 13 12 11 15 15 O 1.42103 * 106.40171 * 23.51955 * 14 13 12 16 16 O 1.42100 * 106.40672 * 156.43847 * 14 13 12 17 17 N 1.65604 * 107.21862 * 269.98119 * 14 13 12 18 18 C 1.47146 * 120.98456 * 269.71452 * 17 14 13 19 19 C 1.53710 * 108.16375 * 129.43099 * 18 17 14 20 20 O 1.42963 * 109.14482 * 52.53828 * 19 18 17 21 21 C 1.42959 * 114.17003 * 297.28983 * 20 19 18 22 22 H 1.09000 * 109.51478 * 302.65849 * 21 20 19 23 23 C 1.52999 * 109.55588 * 182.52777 * 21 20 19 24 24 N 1.46901 * 109.46984 * 65.22758 * 23 21 20 25 25 C 1.47158 * 120.98166 * 89.99931 * 17 14 13 26 26 C 1.38240 * 120.00291 * 359.81685 * 13 12 11 27 27 C 1.38231 * 120.00104 * 89.99950 * 10 9 7 28 28 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 30 30 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 31 31 H 1.08007 * 120.00024 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.99711 * 180.27515 * 12 11 10 33 33 H 1.09000 * 109.68521 * 249.21308 * 18 17 14 34 34 H 1.09002 * 109.68067 * 9.76495 * 18 17 14 35 35 H 1.08996 * 109.65753 * 292.57874 * 19 18 17 36 36 H 1.08999 * 109.48655 * 172.40186 * 19 18 17 37 37 H 1.08996 * 109.47209 * 185.22726 * 23 21 20 38 38 H 1.09002 * 109.46901 * 305.23151 * 23 21 20 39 39 H 1.00900 * 110.99639 * 56.04428 * 24 23 21 40 40 H 1.00895 * 111.00026 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.68052 * 350.23313 * 25 17 14 42 42 H 1.09003 * 109.68053 * 110.78698 * 25 17 14 43 43 H 1.07994 * 120.00385 * 179.97438 * 26 13 12 44 44 H 1.08005 * 119.99926 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6761 -4.1741 -1.1947 12 6 3.5778 -5.2220 -1.1936 13 6 4.0268 -5.7461 0.0041 14 16 5.1727 -7.0845 0.0056 15 8 5.8474 -7.0365 -1.2441 16 8 5.8470 -7.0341 1.2554 17 7 4.2899 -8.4857 0.0067 18 6 3.8911 -9.1287 1.2687 19 6 2.3810 -9.4088 1.2075 20 8 2.0859 -10.1284 0.0080 21 6 2.3810 -9.4108 -1.1927 22 1 1.8329 -8.4686 -1.1979 23 6 1.9685 -10.2487 -2.4046 24 7 0.5094 -10.4184 -2.4088 25 6 3.8863 -9.1278 -1.2544 26 6 3.5770 -5.2200 1.2007 27 6 2.6787 -4.1693 1.1995 28 1 -0.4850 -0.8401 0.0004 29 1 0.6241 -2.5566 0.8903 30 1 0.6247 -2.5571 -0.8896 31 1 2.3227 -3.7668 -2.1306 32 1 3.9294 -5.6328 -2.1285 33 1 4.4362 -10.0645 1.3922 34 1 4.1087 -8.4636 2.1044 35 1 1.8329 -8.4667 1.2111 36 1 2.0864 -10.0047 2.0714 37 1 2.2780 -9.7422 -3.3188 38 1 2.4479 -11.2262 -2.3506 39 1 0.0414 -9.5246 -2.3933 40 1 0.2117 -10.9692 -3.2000 41 1 4.1007 -8.4620 -2.0903 42 1 4.4310 -10.0635 -1.3806 43 1 3.9274 -5.6298 2.1364 44 1 2.3273 -3.7582 2.1344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -97.245073 kcal Electronic energy + Delta-G solvation = -28007.890349 eV Core-core repulsion = 24051.797909 eV Total energy + Delta-G solvation = -3956.092440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.70962 -38.96687 -37.36519 -35.92235 -35.40016 -34.80428 -34.06278 -31.58745 -31.35158 -30.73191 -27.79105 -27.16021 -25.26003 -23.62306 -22.97998 -22.49567 -21.45257 -21.04037 -19.15186 -18.14778 -17.55735 -17.07002 -16.95924 -16.56063 -15.98967 -15.41731 -15.18920 -15.05885 -14.75724 -14.62970 -14.47521 -14.19149 -13.97906 -13.78910 -13.33958 -13.28577 -12.96305 -12.78110 -12.43179 -12.29160 -12.18966 -12.12137 -11.88386 -11.86881 -11.69508 -11.55518 -11.04827 -10.92136 -10.71847 -10.61701 -10.53414 -10.23775 -10.05316 -9.32298 -9.10447 -9.01680 -8.74382 -8.53233 -8.36520 -6.55828 -4.28926 0.27965 1.17281 1.63655 2.75869 3.35612 3.38060 3.41340 3.52846 3.64028 3.94229 3.96765 4.26035 4.40414 4.42608 4.54860 4.64227 4.76961 4.91481 4.95408 5.01317 5.03714 5.08354 5.12078 5.21331 5.27583 5.30843 5.51756 5.52878 5.63026 5.68140 5.74099 5.74584 6.07986 6.13488 6.16207 6.36706 6.64954 6.68015 6.71590 6.91457 6.95170 7.08007 7.22981 7.30674 7.87916 8.25025 8.65021 9.42377 10.83697 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003119 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.404647 B = 8973.672159 C = 9871.740817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.076 2.924 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.598 4.598 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.032 3.968 11 C -0.145 4.145 12 C -0.023 4.023 13 C -0.704 4.704 14 S 2.695 3.305 15 O -0.960 6.960 16 O -0.958 6.958 17 N -1.002 6.002 18 C 0.087 3.913 19 C 0.046 3.954 20 O -0.357 6.357 21 C 0.079 3.921 22 H 0.065 0.935 23 C 0.069 3.931 24 N -0.843 5.843 25 C 0.094 3.906 26 C -0.022 4.022 27 C -0.144 4.144 28 H 0.270 0.730 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.342 0.658 40 H 0.343 0.657 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -21.692 -2.097 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.904 3.096 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.636 4.636 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.032 3.968 11 C -0.164 4.164 12 C -0.043 4.043 13 C -0.793 4.793 14 S 2.789 3.211 15 O -0.950 6.950 16 O -0.949 6.949 17 N -0.840 5.840 18 C -0.039 4.039 19 C -0.033 4.033 20 O -0.275 6.275 21 C 0.019 3.981 22 H 0.083 0.917 23 C -0.062 4.062 24 N -0.373 5.373 25 C -0.032 4.032 26 C -0.041 4.041 27 C -0.163 4.163 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.094 -20.578 -1.399 21.245 hybrid contribution -0.325 -0.376 -0.862 0.995 sum 4.769 -20.954 -2.261 21.608 Atomic orbital electron populations 1.70749 1.06863 1.30709 1.45918 1.25924 0.96447 1.02738 0.93315 0.83432 0.74518 0.74459 0.77202 1.21361 1.21106 1.21088 1.21883 0.94483 0.90367 1.56836 0.92812 1.18664 0.93312 0.91311 0.97756 1.20873 0.92190 0.91568 0.92201 1.21215 0.99167 0.97187 0.98783 1.20743 0.93197 0.94641 0.95679 1.30419 1.25148 1.23844 0.99927 1.01789 0.73624 0.72265 0.73403 1.93552 1.70923 1.86440 1.44090 1.93556 1.70897 1.86407 1.44022 1.57922 1.73650 1.40637 1.11795 1.22237 0.96683 0.99676 0.85262 1.23057 0.93802 0.97887 0.88505 1.88047 1.85195 1.41634 1.12617 1.22481 0.93756 0.95565 0.86346 0.91707 1.21744 0.89628 1.00548 0.94324 1.58546 1.05233 1.22920 1.50632 1.22065 0.95750 0.99825 0.85587 1.20761 0.93119 0.94539 0.95729 1.21224 0.99129 0.97131 0.98797 0.91970 0.95623 0.95654 0.85398 0.85324 0.89987 0.88221 0.92366 0.87587 0.93593 0.89826 0.84558 0.84430 0.88334 0.89890 0.85210 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.47 13.65 55.43 0.76 -25.71 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.08 24.65 29.90 -169.99 -5.08 19.57 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.60 -16.27 9.09 -34.44 -0.31 -16.58 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.63 4.42 -29.03 -0.13 0.50 16 10 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 11 C -0.14 -2.63 9.70 -39.58 -0.38 -3.01 16 12 C -0.02 -0.37 9.52 -39.58 -0.38 -0.74 16 13 C -0.70 -10.82 5.97 -39.58 -0.24 -11.06 16 14 S 2.69 37.25 5.70 -107.50 -0.61 36.64 16 15 O -0.96 -15.10 16.08 -57.17 -0.92 -16.02 16 16 O -0.96 -15.14 16.08 -57.17 -0.92 -16.06 16 17 N -1.00 -10.69 3.34 -112.82 -0.38 -11.07 16 18 C 0.09 0.78 6.60 -3.32 -0.02 0.76 16 19 C 0.05 0.40 7.00 37.53 0.26 0.67 16 20 O -0.36 -3.74 10.34 -35.23 -0.36 -4.10 16 21 C 0.08 0.72 2.95 -26.58 -0.08 0.64 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 C 0.07 0.51 6.46 -3.82 -0.02 0.49 16 24 N -0.84 -6.47 9.58 -10.37 -0.10 -6.57 16 25 C 0.09 0.86 5.85 -3.53 -0.02 0.84 16 26 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 27 C -0.14 -2.63 9.70 -39.58 -0.38 -3.01 16 28 H 0.27 7.76 7.22 -40.82 -0.29 7.46 16 29 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 30 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 31 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 32 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.85 7.24 -51.93 -0.38 0.47 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.34 2.47 8.99 -39.29 -0.35 2.12 16 40 H 0.34 1.95 9.08 -39.29 -0.36 1.60 16 41 H 0.10 0.85 7.25 -51.93 -0.38 0.47 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 44 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -34.15 375.07 -11.07 -45.21 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.39 Total: 3.11 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -2.71 Total: -30.65 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.28 Total: -43.35 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -2.20 Total: -36.19 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.61 Total: 36.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.15 -11.07 -45.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.034 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds