Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46757 * 180.02562 * 9 7 2 11 11 C 1.38233 * 119.99900 * 269.72321 * 10 9 7 12 12 C 1.38238 * 120.00000 * 179.79044 * 11 10 9 13 13 C 1.38230 * 119.99886 * 0.44043 * 12 11 10 14 14 S 1.76195 * 120.00217 * 179.83303 * 13 12 11 15 15 O 1.42103 * 106.40171 * 23.51955 * 14 13 12 16 16 O 1.42100 * 106.40672 * 156.43847 * 14 13 12 17 17 N 1.65604 * 107.21862 * 269.98119 * 14 13 12 18 18 C 1.47146 * 120.98456 * 269.71452 * 17 14 13 19 19 C 1.53710 * 108.16375 * 129.43099 * 18 17 14 20 20 O 1.42963 * 109.14482 * 52.53828 * 19 18 17 21 21 C 1.42959 * 114.17003 * 297.28983 * 20 19 18 22 22 H 1.09000 * 109.51478 * 302.65849 * 21 20 19 23 23 C 1.52999 * 109.55588 * 182.52777 * 21 20 19 24 24 N 1.46901 * 109.46984 * 65.22758 * 23 21 20 25 25 C 1.47158 * 120.98166 * 89.99931 * 17 14 13 26 26 C 1.38240 * 120.00291 * 359.81685 * 13 12 11 27 27 C 1.38231 * 120.00104 * 89.99950 * 10 9 7 28 28 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 30 30 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 31 31 H 1.08007 * 120.00024 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.99711 * 180.27515 * 12 11 10 33 33 H 1.09000 * 109.68521 * 249.21308 * 18 17 14 34 34 H 1.09002 * 109.68067 * 9.76495 * 18 17 14 35 35 H 1.08996 * 109.65753 * 292.57874 * 19 18 17 36 36 H 1.08999 * 109.48655 * 172.40186 * 19 18 17 37 37 H 1.08996 * 109.47209 * 185.22726 * 23 21 20 38 38 H 1.09002 * 109.46901 * 305.23151 * 23 21 20 39 39 H 1.00900 * 110.99639 * 56.04428 * 24 23 21 40 40 H 1.00895 * 111.00026 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.68052 * 350.23313 * 25 17 14 42 42 H 1.09003 * 109.68053 * 110.78698 * 25 17 14 43 43 H 1.07994 * 120.00385 * 179.97438 * 26 13 12 44 44 H 1.08005 * 119.99926 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6761 -4.1741 -1.1947 12 6 3.5778 -5.2220 -1.1936 13 6 4.0268 -5.7461 0.0041 14 16 5.1727 -7.0845 0.0056 15 8 5.8474 -7.0365 -1.2441 16 8 5.8470 -7.0341 1.2554 17 7 4.2899 -8.4857 0.0067 18 6 3.8911 -9.1287 1.2687 19 6 2.3810 -9.4088 1.2075 20 8 2.0859 -10.1284 0.0080 21 6 2.3810 -9.4108 -1.1927 22 1 1.8329 -8.4686 -1.1979 23 6 1.9685 -10.2487 -2.4046 24 7 0.5094 -10.4184 -2.4088 25 6 3.8863 -9.1278 -1.2544 26 6 3.5770 -5.2200 1.2007 27 6 2.6787 -4.1693 1.1995 28 1 -0.4850 -0.8401 0.0004 29 1 0.6241 -2.5566 0.8903 30 1 0.6247 -2.5571 -0.8896 31 1 2.3227 -3.7668 -2.1306 32 1 3.9294 -5.6328 -2.1285 33 1 4.4362 -10.0645 1.3922 34 1 4.1087 -8.4636 2.1044 35 1 1.8329 -8.4667 1.2111 36 1 2.0864 -10.0047 2.0714 37 1 2.2780 -9.7422 -3.3188 38 1 2.4479 -11.2262 -2.3506 39 1 0.0414 -9.5246 -2.3933 40 1 0.2117 -10.9692 -3.2000 41 1 4.1007 -8.4620 -2.0903 42 1 4.4310 -10.0635 -1.3806 43 1 3.9274 -5.6298 2.1364 44 1 2.3273 -3.7582 2.1344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -122.916904 kcal Electronic energy + Delta-G solvation = -28009.003563 eV Core-core repulsion = 24051.797909 eV Total energy + Delta-G solvation = -3957.205654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.45168 -40.35206 -38.54159 -37.10479 -36.11378 -35.99604 -35.50028 -33.29688 -32.11676 -31.98630 -28.95073 -28.52622 -25.95263 -25.54763 -23.87289 -23.67592 -22.77236 -21.98439 -20.18216 -19.25760 -19.06329 -18.58051 -17.80174 -17.39062 -16.87023 -16.57737 -16.31168 -16.07308 -15.72144 -15.64102 -15.59509 -15.43937 -15.28455 -15.00078 -14.73540 -14.59134 -13.93165 -13.66601 -13.62843 -13.58243 -13.55588 -13.32990 -13.31708 -13.00024 -12.71515 -12.59291 -12.57720 -12.20350 -12.17181 -11.99777 -11.84781 -11.41203 -11.20827 -11.16263 -10.65112 -10.08892 -10.04179 -9.86722 -9.56430 -8.76506 -6.50752 -0.82746 -0.19171 0.27034 1.49321 1.57196 1.74293 1.75277 2.40562 2.51430 2.66030 2.76785 3.05312 3.06077 3.47608 3.61379 3.73589 3.84706 3.89472 3.97575 4.01196 4.08027 4.25788 4.27556 4.32793 4.33624 4.39869 4.56622 4.64221 4.66848 4.68499 4.72745 4.87207 4.93166 4.96467 5.02373 5.04025 5.05233 5.17972 5.35412 5.67832 5.74749 5.85697 6.05792 6.14134 6.31819 6.45566 6.59194 7.28512 8.62818 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003119 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.404647 B = 8973.672159 C = 9871.740817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.029 4.029 3 Si 1.120 2.880 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.608 4.608 8 H 0.044 0.956 9 C 0.032 3.968 10 C 0.000 4.000 11 C -0.154 4.154 12 C -0.018 4.018 13 C -0.701 4.701 14 S 2.718 3.282 15 O -0.975 6.975 16 O -0.975 6.975 17 N -0.995 5.995 18 C 0.081 3.919 19 C 0.044 3.956 20 O -0.372 6.372 21 C 0.078 3.922 22 H 0.054 0.946 23 C 0.070 3.930 24 N -0.857 5.857 25 C 0.088 3.912 26 C -0.017 4.017 27 C -0.154 4.154 28 H 0.259 0.741 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.126 0.874 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.342 0.658 40 H 0.353 0.647 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.157 0.843 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 -23.364 -2.262 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.227 4.227 3 Si 0.942 3.058 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.646 4.646 8 H 0.063 0.937 9 C -0.005 4.005 10 C -0.001 4.001 11 C -0.173 4.173 12 C -0.037 4.037 13 C -0.788 4.788 14 S 2.810 3.190 15 O -0.966 6.966 16 O -0.965 6.965 17 N -0.835 5.835 18 C -0.044 4.044 19 C -0.034 4.034 20 O -0.290 6.290 21 C 0.018 3.982 22 H 0.072 0.928 23 C -0.062 4.062 24 N -0.388 5.388 25 C -0.038 4.038 26 C -0.037 4.037 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.147 0.853 32 H 0.175 0.825 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.175 0.825 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.711 -22.250 -1.568 23.292 hybrid contribution -0.818 -0.052 -0.806 1.149 sum 5.893 -22.301 -2.374 23.188 Atomic orbital electron populations 1.70864 1.07740 1.30147 1.47983 1.27347 0.96549 1.06408 0.92426 0.82874 0.73998 0.71074 0.77880 1.20053 1.20058 1.20079 1.22186 0.94238 0.92080 1.56086 0.93728 1.18438 0.93708 0.92177 0.96145 1.20623 0.93330 0.91984 0.94137 1.21278 0.99909 0.98041 0.98051 1.21013 0.92019 0.93470 0.97191 1.30904 1.24214 1.24119 0.99545 1.01126 0.73167 0.72144 0.72534 1.93530 1.71450 1.86797 1.44778 1.93533 1.71448 1.86777 1.44765 1.57702 1.73383 1.39190 1.13226 1.22476 0.96957 1.00384 0.84542 1.23168 0.93574 0.97851 0.88796 1.88034 1.85405 1.42264 1.13309 1.22546 0.93613 0.95412 0.86649 0.92810 1.21773 0.89531 1.00637 0.94226 1.58548 1.05550 1.23232 1.51457 1.22297 0.95925 1.00595 0.84945 1.21025 0.91981 0.93393 0.97251 1.21283 0.99918 0.98035 0.98069 0.93116 0.97202 0.97153 0.85287 0.82536 0.88278 0.87613 0.93302 0.85573 0.91864 0.89526 0.84520 0.83305 0.87645 0.88140 0.82505 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.65 21.45 0.29 -55.42 16 2 C -0.03 -1.62 5.46 84.65 0.46 -1.16 16 3 Si 1.12 49.66 29.90 68.60 2.05 51.71 16 4 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.61 -34.02 9.09 25.60 0.23 -33.79 16 8 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.03 1.62 4.42 29.11 0.13 1.75 16 10 C 0.00 -0.02 5.07 -19.87 -0.10 -0.12 16 11 C -0.15 -5.61 9.70 22.27 0.22 -5.40 16 12 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 13 C -0.70 -20.27 5.97 22.27 0.13 -20.13 16 14 S 2.72 68.31 5.70 -56.49 -0.32 67.99 16 15 O -0.98 -28.10 16.08 -128.00 -2.06 -30.16 16 16 O -0.97 -28.30 16.08 -128.00 -2.06 -30.36 16 17 N -1.00 -18.56 3.34 -510.86 -1.70 -20.26 16 18 C 0.08 1.24 6.60 86.50 0.57 1.81 16 19 C 0.04 0.69 7.00 72.22 0.51 1.19 16 20 O -0.37 -7.04 10.34 -148.98 -1.54 -8.58 16 21 C 0.08 1.27 2.95 30.69 0.09 1.36 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 C 0.07 0.89 6.46 86.30 0.56 1.45 16 24 N -0.86 -11.92 9.58 -186.72 -1.79 -13.71 16 25 C 0.09 1.37 5.85 86.35 0.51 1.87 16 26 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 27 C -0.15 -5.66 9.70 22.27 0.22 -5.45 16 28 H 0.26 15.56 7.22 -92.71 -0.67 14.89 16 29 H 0.01 0.51 7.95 -2.39 -0.02 0.49 16 30 H 0.01 0.54 7.95 -2.39 -0.02 0.52 16 31 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.16 3.79 7.62 -2.91 -0.02 3.77 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.50 7.24 -2.39 -0.02 1.48 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.34 4.63 8.99 -89.69 -0.81 3.82 16 40 H 0.35 3.51 9.08 -89.70 -0.81 2.70 16 41 H 0.11 1.50 7.25 -2.39 -0.02 1.49 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.16 3.85 7.62 -2.91 -0.02 3.83 16 44 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -73.40 375.07 -3.68 -77.08 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.49 Total: 18.96 kcal Atomic # 6 Polarization: -61.20 SS G_CDS: 3.94 Total: -57.26 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -3.20 Total: -89.39 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -5.66 Total: -69.09 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: 68.31 SS G_CDS: -0.32 Total: 67.99 kcal Total: -73.40 -3.68 -77.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.837 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds