Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00416 * 2 1 4 4 H 1.48497 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47215 * 300.00504 * 3 2 1 6 6 H 1.48506 * 109.46858 * 60.00301 * 3 2 1 7 7 C 1.37876 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47450 * 180.02562 * 9 7 2 11 11 C 1.38231 * 120.00263 * 89.99635 * 10 9 7 12 12 C 1.38236 * 119.99994 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.00249 * 359.97438 * 12 11 10 14 14 S 1.76198 * 120.00168 * 179.97438 * 13 12 11 15 15 O 1.42095 * 106.40441 * 336.46372 * 14 13 12 16 16 O 1.42091 * 106.40358 * 203.53853 * 14 13 12 17 17 N 1.65604 * 107.21265 * 90.00359 * 14 13 12 18 18 C 1.47149 * 120.98656 * 90.00323 * 17 14 13 19 19 C 1.53296 * 108.38485 * 230.50849 * 18 17 14 20 20 O 1.42956 * 109.22529 * 307.69712 * 19 18 17 21 21 C 1.42971 * 114.16960 * 62.57735 * 20 19 18 22 22 H 1.08998 * 109.51001 * 57.39428 * 21 20 19 23 23 C 1.52993 * 109.51409 * 177.49901 * 21 20 19 24 24 N 1.46905 * 109.47039 * 300.00038 * 23 21 20 25 25 C 1.47153 * 120.98027 * 269.97454 * 17 14 13 26 26 C 1.38238 * 119.99468 * 0.27482 * 13 12 11 27 27 C 1.38232 * 120.00261 * 359.51319 * 26 13 12 28 28 H 0.97009 * 119.99499 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47079 * 60.00340 * 9 7 2 30 30 H 1.09005 * 109.46963 * 300.00227 * 9 7 2 31 31 H 1.08003 * 119.99869 * 359.97438 * 11 10 9 32 32 H 1.08001 * 120.00045 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.68510 * 110.78522 * 18 17 14 34 34 H 1.09002 * 109.70689 * 350.24756 * 18 17 14 35 35 H 1.09001 * 109.51436 * 187.76810 * 19 18 17 36 36 H 1.09012 * 109.55023 * 67.64273 * 19 18 17 37 37 H 1.09001 * 109.47393 * 180.02562 * 23 21 20 38 38 H 1.08998 * 109.47408 * 59.99965 * 23 21 20 39 39 H 1.00901 * 110.99869 * 56.04956 * 24 23 21 40 40 H 1.00896 * 110.99543 * 180.02562 * 24 23 21 41 41 H 1.09005 * 109.68085 * 9.76554 * 25 17 14 42 42 H 1.09005 * 109.68664 * 249.21577 * 25 17 14 43 43 H 1.07997 * 119.99495 * 179.72893 * 26 13 12 44 44 H 1.08001 * 120.00273 * 180.27358 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2300 -3.6447 -0.0005 11 6 2.6792 -4.1701 1.1965 12 6 3.5770 -5.2212 1.1965 13 6 4.0252 -5.7473 -0.0007 14 16 5.1701 -7.0867 -0.0007 15 8 5.8455 -7.0373 1.2484 16 8 5.8437 -7.0388 -1.2509 17 7 4.2861 -8.4870 0.0007 18 6 3.8808 -9.1284 -1.2602 19 6 2.3753 -9.4102 -1.1972 20 8 2.0806 -10.1279 0.0034 21 6 2.3774 -9.4090 1.2030 22 1 1.8295 -8.4668 1.2078 23 6 1.9655 -10.2460 2.4157 24 7 0.5237 -10.5207 2.3541 25 6 3.8831 -9.1271 1.2629 26 6 3.5800 -5.2185 -1.1978 27 6 2.6788 -4.1703 -1.1978 28 1 -0.4850 0.8402 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5570 0.8897 31 1 2.3287 -3.7593 2.1319 32 1 3.9283 -5.6314 2.1318 33 1 4.4245 -10.0645 -1.3873 34 1 4.0951 -8.4630 -2.0965 35 1 2.0802 -10.0073 -2.0601 36 1 1.8273 -8.4679 -1.2019 37 1 2.1917 -9.6971 3.3298 38 1 2.5152 -11.1872 2.4112 39 1 0.2783 -10.9719 1.4856 40 1 0.2267 -11.0722 3.1450 41 1 4.0988 -8.4604 2.0979 42 1 4.4270 -10.0632 1.3900 43 1 3.9335 -5.6267 -2.1331 44 1 2.3276 -3.7601 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -95.482491 kcal Electronic energy + Delta-G solvation = -27965.376273 eV Core-core repulsion = 24009.360265 eV Total energy + Delta-G solvation = -3956.016008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.74671 -38.83842 -37.31279 -35.87196 -35.39704 -34.74934 -33.70239 -31.58642 -31.33451 -30.61713 -27.85839 -27.45749 -25.20376 -23.76706 -22.99600 -22.37876 -21.29440 -20.79259 -19.11255 -18.08775 -17.45814 -17.02757 -16.46612 -16.34968 -16.17978 -15.58771 -15.16402 -15.11942 -14.79406 -14.48849 -14.42823 -14.38552 -14.01995 -13.76253 -13.17505 -13.02654 -12.89326 -12.65810 -12.35816 -12.23139 -12.09541 -11.97474 -11.83989 -11.74226 -11.59977 -11.51266 -11.07644 -10.95279 -10.78110 -10.67060 -10.52066 -10.36841 -9.76197 -9.65754 -9.11353 -8.97775 -8.63286 -8.55873 -8.41121 -6.18711 -4.23805 0.34042 1.28005 1.75392 2.80741 3.22152 3.30268 3.35409 3.39023 3.70281 4.01466 4.04484 4.31079 4.35513 4.45224 4.58534 4.69839 4.80462 4.93586 4.97592 5.04228 5.11730 5.17883 5.18752 5.25302 5.27921 5.37909 5.52168 5.68552 5.70996 5.72813 5.76332 5.87469 6.18308 6.20772 6.28418 6.48019 6.77678 6.80016 6.86629 6.87602 7.16276 7.26709 7.40110 7.56457 7.76440 8.11281 8.81186 9.41346 10.91322 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.003094 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.731981 B = 9046.330441 C = 9935.888922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.028 3.972 11 C -0.144 4.144 12 C -0.023 4.023 13 C -0.705 4.705 14 S 2.695 3.305 15 O -0.960 6.960 16 O -0.960 6.960 17 N -1.002 6.002 18 C 0.087 3.913 19 C 0.050 3.950 20 O -0.376 6.376 21 C 0.076 3.924 22 H 0.077 0.923 23 C 0.072 3.928 24 N -0.848 5.848 25 C 0.095 3.905 26 C -0.024 4.024 27 C -0.144 4.144 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.036 0.964 39 H 0.350 0.650 40 H 0.342 0.658 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -22.879 0.995 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.002 3.998 10 C 0.028 3.972 11 C -0.163 4.163 12 C -0.043 4.043 13 C -0.795 4.795 14 S 2.789 3.211 15 O -0.951 6.951 16 O -0.950 6.950 17 N -0.840 5.840 18 C -0.038 4.038 19 C -0.029 4.029 20 O -0.295 6.295 21 C 0.016 3.984 22 H 0.095 0.905 23 C -0.060 4.060 24 N -0.378 5.378 25 C -0.031 4.031 26 C -0.044 4.044 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.649 -22.119 1.034 22.626 hybrid contribution 0.137 0.688 -0.103 0.709 sum 4.787 -21.431 0.931 21.979 Atomic orbital electron populations 1.69961 1.06064 1.27030 1.49845 1.25006 0.94934 0.99410 0.94801 0.86423 0.80136 0.83094 0.77768 1.19579 1.20791 1.20773 1.21003 0.93122 0.89439 1.51981 0.92245 1.18551 0.92646 0.89519 0.99090 1.21128 0.92106 0.91965 0.92035 1.21250 0.98980 0.97092 0.98943 1.20752 0.93265 0.94650 0.95606 1.30356 1.25344 1.23800 1.00008 1.01766 0.73650 0.72279 0.73356 1.93550 1.70958 1.86431 1.44114 1.93550 1.71022 1.86436 1.44036 1.57931 1.73470 1.40889 1.11682 1.22122 0.96488 0.99691 0.85496 1.22963 0.94101 0.97966 0.87837 1.87852 1.85487 1.42748 1.13395 1.22570 0.93903 0.96509 0.85387 0.90467 1.21744 0.89211 0.98505 0.96535 1.58611 1.14668 1.56232 1.08298 1.22052 0.95644 0.99784 0.85655 1.20748 0.93313 0.94692 0.95603 1.21248 0.99002 0.97164 0.98923 0.92666 0.94680 0.94665 0.85280 0.85389 0.90159 0.88146 0.87613 0.92032 0.89319 0.94566 0.83722 0.84569 0.88114 0.90169 0.85387 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.04 0.94 5.10 -29.04 -0.15 0.79 16 10 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 11 C -0.14 -2.64 9.70 -39.58 -0.38 -3.03 16 12 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 13 C -0.71 -10.98 5.97 -39.58 -0.24 -11.21 16 14 S 2.69 37.58 5.70 -107.50 -0.61 36.96 16 15 O -0.96 -15.26 16.08 -57.18 -0.92 -16.18 16 16 O -0.96 -15.23 16.08 -57.18 -0.92 -16.15 16 17 N -1.00 -10.73 3.34 -113.06 -0.38 -11.11 16 18 C 0.09 0.77 6.57 -3.53 -0.02 0.75 16 19 C 0.05 0.41 6.98 37.31 0.26 0.67 16 20 O -0.38 -3.59 9.72 -35.23 -0.34 -3.93 16 21 C 0.08 0.70 3.05 -26.58 -0.08 0.62 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 23 C 0.07 0.55 6.52 -3.82 -0.02 0.52 16 24 N -0.85 -6.71 9.62 -10.37 -0.10 -6.81 16 25 C 0.09 0.88 5.86 -3.53 -0.02 0.86 16 26 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 27 C -0.14 -2.64 9.70 -39.58 -0.38 -3.03 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 32 H 0.13 1.75 7.62 -52.49 -0.40 1.35 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.84 7.25 -51.93 -0.38 0.46 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.35 2.75 8.39 -39.29 -0.33 2.42 16 40 H 0.34 2.02 9.08 -39.29 -0.36 1.66 16 41 H 0.10 0.89 7.25 -51.93 -0.38 0.52 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.13 1.73 7.61 -52.49 -0.40 1.33 16 44 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -33.10 375.35 -11.06 -44.16 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.42 Total: 3.30 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.74 Total: -27.24 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.26 Total: -42.61 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -2.18 Total: -36.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 37.58 SS G_CDS: -0.61 Total: 36.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.10 -11.06 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.325 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds