Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00416 * 2 1 4 4 H 1.48497 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47215 * 300.00504 * 3 2 1 6 6 H 1.48506 * 109.46858 * 60.00301 * 3 2 1 7 7 C 1.37876 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47450 * 180.02562 * 9 7 2 11 11 C 1.38231 * 120.00263 * 89.99635 * 10 9 7 12 12 C 1.38236 * 119.99994 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.00249 * 359.97438 * 12 11 10 14 14 S 1.76198 * 120.00168 * 179.97438 * 13 12 11 15 15 O 1.42095 * 106.40441 * 336.46372 * 14 13 12 16 16 O 1.42091 * 106.40358 * 203.53853 * 14 13 12 17 17 N 1.65604 * 107.21265 * 90.00359 * 14 13 12 18 18 C 1.47149 * 120.98656 * 90.00323 * 17 14 13 19 19 C 1.53296 * 108.38485 * 230.50849 * 18 17 14 20 20 O 1.42956 * 109.22529 * 307.69712 * 19 18 17 21 21 C 1.42971 * 114.16960 * 62.57735 * 20 19 18 22 22 H 1.08998 * 109.51001 * 57.39428 * 21 20 19 23 23 C 1.52993 * 109.51409 * 177.49901 * 21 20 19 24 24 N 1.46905 * 109.47039 * 300.00038 * 23 21 20 25 25 C 1.47153 * 120.98027 * 269.97454 * 17 14 13 26 26 C 1.38238 * 119.99468 * 0.27482 * 13 12 11 27 27 C 1.38232 * 120.00261 * 359.51319 * 26 13 12 28 28 H 0.97009 * 119.99499 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47079 * 60.00340 * 9 7 2 30 30 H 1.09005 * 109.46963 * 300.00227 * 9 7 2 31 31 H 1.08003 * 119.99869 * 359.97438 * 11 10 9 32 32 H 1.08001 * 120.00045 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.68510 * 110.78522 * 18 17 14 34 34 H 1.09002 * 109.70689 * 350.24756 * 18 17 14 35 35 H 1.09001 * 109.51436 * 187.76810 * 19 18 17 36 36 H 1.09012 * 109.55023 * 67.64273 * 19 18 17 37 37 H 1.09001 * 109.47393 * 180.02562 * 23 21 20 38 38 H 1.08998 * 109.47408 * 59.99965 * 23 21 20 39 39 H 1.00901 * 110.99869 * 56.04956 * 24 23 21 40 40 H 1.00896 * 110.99543 * 180.02562 * 24 23 21 41 41 H 1.09005 * 109.68085 * 9.76554 * 25 17 14 42 42 H 1.09005 * 109.68664 * 249.21577 * 25 17 14 43 43 H 1.07997 * 119.99495 * 179.72893 * 26 13 12 44 44 H 1.08001 * 120.00273 * 180.27358 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2300 -3.6447 -0.0005 11 6 2.6792 -4.1701 1.1965 12 6 3.5770 -5.2212 1.1965 13 6 4.0252 -5.7473 -0.0007 14 16 5.1701 -7.0867 -0.0007 15 8 5.8455 -7.0373 1.2484 16 8 5.8437 -7.0388 -1.2509 17 7 4.2861 -8.4870 0.0007 18 6 3.8808 -9.1284 -1.2602 19 6 2.3753 -9.4102 -1.1972 20 8 2.0806 -10.1279 0.0034 21 6 2.3774 -9.4090 1.2030 22 1 1.8295 -8.4668 1.2078 23 6 1.9655 -10.2460 2.4157 24 7 0.5237 -10.5207 2.3541 25 6 3.8831 -9.1271 1.2629 26 6 3.5800 -5.2185 -1.1978 27 6 2.6788 -4.1703 -1.1978 28 1 -0.4850 0.8402 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5570 0.8897 31 1 2.3287 -3.7593 2.1319 32 1 3.9283 -5.6314 2.1318 33 1 4.4245 -10.0645 -1.3873 34 1 4.0951 -8.4630 -2.0965 35 1 2.0802 -10.0073 -2.0601 36 1 1.8273 -8.4679 -1.2019 37 1 2.1917 -9.6971 3.3298 38 1 2.5152 -11.1872 2.4112 39 1 0.2783 -10.9719 1.4856 40 1 0.2267 -11.0722 3.1450 41 1 4.0988 -8.4604 2.0979 42 1 4.4270 -10.0632 1.3900 43 1 3.9335 -5.6267 -2.1331 44 1 2.3276 -3.7601 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -120.151978 kcal Electronic energy + Delta-G solvation = -27966.446022 eV Core-core repulsion = 24009.360265 eV Total energy + Delta-G solvation = -3957.085757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46341 -40.25067 -38.49976 -37.06429 -36.12874 -35.61378 -35.42790 -33.34127 -32.04780 -31.94368 -29.26949 -28.58756 -25.90390 -25.61275 -23.78856 -23.67041 -22.51037 -21.86542 -20.14406 -19.16095 -18.65792 -18.51324 -17.76560 -17.23984 -16.92082 -16.82243 -16.44343 -16.15472 -15.99584 -15.61345 -15.49963 -15.43843 -14.95087 -14.68414 -14.65362 -14.49407 -13.96443 -13.70171 -13.50749 -13.43535 -13.43210 -13.32253 -13.27036 -12.89459 -12.70036 -12.68593 -12.56275 -12.25207 -12.21812 -12.07107 -11.69559 -11.55986 -11.47550 -11.18691 -10.67000 -10.00942 -9.99320 -9.85487 -9.55502 -8.28305 -6.41180 -0.77471 -0.09877 0.36914 1.36644 1.38087 1.50775 1.79271 2.33640 2.52638 2.72976 2.74922 3.04397 3.10116 3.51104 3.64061 3.82748 3.92562 3.93346 4.05392 4.12910 4.13594 4.27069 4.31627 4.38589 4.44843 4.45488 4.64368 4.66417 4.76429 4.78815 4.86701 4.88482 5.04300 5.05426 5.06834 5.21775 5.24555 5.30669 5.39253 5.65894 5.83884 5.89724 6.08070 6.14776 6.27496 6.64462 6.70761 7.28098 8.81995 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.003094 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.731981 B = 9046.330441 C = 9935.888922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.003 4.003 11 C -0.154 4.154 12 C -0.020 4.020 13 C -0.703 4.703 14 S 2.719 3.281 15 O -0.976 6.976 16 O -0.975 6.975 17 N -0.996 5.996 18 C 0.080 3.920 19 C 0.047 3.953 20 O -0.382 6.382 21 C 0.077 3.923 22 H 0.056 0.944 23 C 0.072 3.928 24 N -0.860 5.860 25 C 0.089 3.911 26 C -0.019 4.019 27 C -0.154 4.154 28 H 0.267 0.733 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.129 0.871 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.349 0.651 40 H 0.352 0.648 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.157 0.843 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -24.634 0.942 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.011 3.989 10 C -0.003 4.003 11 C -0.173 4.173 12 C -0.039 4.039 13 C -0.790 4.790 14 S 2.811 3.189 15 O -0.967 6.967 16 O -0.966 6.966 17 N -0.835 5.835 18 C -0.044 4.044 19 C -0.031 4.031 20 O -0.301 6.301 21 C 0.018 3.982 22 H 0.074 0.926 23 C -0.060 4.060 24 N -0.392 5.392 25 C -0.037 4.037 26 C -0.038 4.038 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.147 0.853 32 H 0.172 0.828 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.174 0.826 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.270 -23.860 0.986 24.690 hybrid contribution -0.369 1.062 -0.095 1.128 sum 5.900 -22.798 0.891 23.566 Atomic orbital electron populations 1.70067 1.07532 1.28095 1.50732 1.25868 0.95770 1.02976 0.94331 0.85397 0.78801 0.78769 0.78101 1.19217 1.20020 1.20022 1.21309 0.93038 0.90995 1.51763 0.92825 1.18270 0.92984 0.90776 0.96877 1.20828 0.93211 0.92292 0.93961 1.21302 0.99774 0.97987 0.98235 1.21007 0.92190 0.93547 0.97123 1.30857 1.24415 1.24135 0.99602 1.01097 0.73184 0.72158 0.72493 1.93527 1.71506 1.86800 1.44847 1.93528 1.71530 1.86800 1.44721 1.57708 1.73217 1.39414 1.13176 1.22391 0.96949 1.00442 0.84634 1.23092 0.93680 0.97967 0.88328 1.87854 1.85588 1.42909 1.13720 1.22549 0.93631 0.95999 0.86066 0.92565 1.21775 0.89195 0.98915 0.96075 1.58615 1.15032 1.56740 1.08799 1.22275 0.95815 1.00580 0.84981 1.21017 0.92161 0.93538 0.97112 1.21309 0.99737 0.98007 0.98203 0.92362 0.96814 0.96901 0.85267 0.82769 0.88271 0.87588 0.85129 0.93257 0.88515 0.93311 0.83817 0.83403 0.87716 0.88198 0.82591 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 13.29 21.45 0.28 -53.94 16 2 C 0.01 0.53 5.46 84.65 0.46 1.00 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -29.75 9.09 25.60 0.23 -29.52 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.05 2.46 5.10 29.10 0.15 2.61 16 10 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 11 C -0.15 -5.76 9.70 22.27 0.22 -5.55 16 12 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 13 C -0.70 -20.79 5.97 22.27 0.13 -20.66 16 14 S 2.72 69.47 5.70 -56.49 -0.32 69.15 16 15 O -0.98 -28.70 16.08 -128.00 -2.06 -30.76 16 16 O -0.98 -28.49 16.08 -128.00 -2.06 -30.55 16 17 N -1.00 -18.75 3.34 -511.60 -1.71 -20.46 16 18 C 0.08 1.19 6.57 86.35 0.57 1.76 16 19 C 0.05 0.68 6.98 72.08 0.50 1.19 16 20 O -0.38 -6.48 9.72 -148.98 -1.45 -7.93 16 21 C 0.08 1.29 3.05 30.69 0.09 1.38 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 C 0.07 0.96 6.52 86.30 0.56 1.52 16 24 N -0.86 -12.44 9.62 -186.72 -1.80 -14.23 16 25 C 0.09 1.42 5.86 86.35 0.51 1.93 16 26 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 27 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 28 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 31 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 32 H 0.15 3.93 7.62 -2.91 -0.02 3.91 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.47 7.25 -2.39 -0.02 1.45 16 35 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 39 H 0.35 5.05 8.39 -89.69 -0.75 4.30 16 40 H 0.35 3.66 9.08 -89.70 -0.81 2.85 16 41 H 0.10 1.60 7.25 -2.38 -0.02 1.58 16 42 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.16 3.87 7.61 -2.91 -0.02 3.84 16 44 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -71.42 375.35 -3.66 -75.07 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.54 Total: 18.78 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 3.97 Total: -50.80 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -3.22 Total: -88.63 kcal Atomic # 8 Polarization: -63.67 SS G_CDS: -5.57 Total: -69.23 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 69.47 SS G_CDS: -0.32 Total: 69.15 kcal Total: -71.42 -3.66 -75.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.078 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds