Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48497 * 109.47254 * 240.00285 * 3 2 1 5 5 H 1.48499 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46666 * 120.00019 * 3 2 1 7 7 C 1.37881 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.38231 * 119.99817 * 90.00521 * 10 9 7 12 12 C 1.38238 * 119.99893 * 180.02562 * 11 10 9 13 13 C 1.38233 * 119.99951 * 0.02562 * 12 11 10 14 14 S 1.76198 * 120.00090 * 179.97438 * 13 12 11 15 15 O 1.42097 * 106.40257 * 336.46063 * 14 13 12 16 16 O 1.42096 * 106.40421 * 203.53658 * 14 13 12 17 17 N 1.65608 * 107.21920 * 89.99696 * 14 13 12 18 18 C 1.46505 * 119.99467 * 64.99925 * 17 14 13 19 19 C 1.52999 * 109.46656 * 165.00330 * 18 17 14 20 20 H 1.09004 * 109.51036 * 304.91274 * 19 18 17 21 21 C 1.53103 * 109.50786 * 184.78596 * 19 18 17 22 22 N 1.47010 * 109.26073 * 183.21906 * 21 19 18 23 23 C 1.47016 * 110.75668 * 58.60657 * 22 21 19 24 24 C 1.53096 * 109.25942 * 301.38999 * 23 22 21 25 25 O 1.43012 * 109.51188 * 65.00081 * 19 18 17 26 26 C 1.38237 * 120.00053 * 0.25165 * 13 12 11 27 27 C 1.38236 * 120.00019 * 359.49236 * 26 13 12 28 28 H 0.97005 * 120.00165 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47091 * 60.01233 * 9 7 2 30 30 H 1.08996 * 109.47749 * 300.00600 * 9 7 2 31 31 H 1.08003 * 120.00230 * 359.97438 * 11 10 9 32 32 H 1.07999 * 120.00321 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00363 * 245.00427 * 17 14 13 34 34 H 1.08996 * 109.47160 * 45.00626 * 18 17 14 35 35 H 1.08998 * 109.47565 * 284.99583 * 18 17 14 36 36 H 1.09008 * 109.50058 * 303.15002 * 21 19 18 37 37 H 1.08995 * 109.50552 * 63.27759 * 21 19 18 38 38 H 1.00905 * 110.99671 * 294.83705 * 22 21 19 39 39 H 1.08999 * 109.50851 * 181.44676 * 23 22 21 40 40 H 1.09004 * 109.50278 * 61.32439 * 23 22 21 41 41 H 1.09001 * 109.50487 * 176.77808 * 24 23 22 42 42 H 1.08996 * 109.50808 * 296.86767 * 24 23 22 43 43 H 1.08003 * 119.99998 * 179.73772 * 26 13 12 44 44 H 1.07998 * 120.00098 * 180.23241 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6793 -4.1700 1.1966 12 6 3.5780 -5.2203 1.1966 13 6 4.0281 -5.7449 -0.0005 14 16 5.1741 -7.0833 -0.0005 15 8 5.8481 -7.0344 1.2495 16 8 5.8491 -7.0336 -1.2500 17 7 4.2914 -8.4845 -0.0013 18 6 3.4478 -8.8180 -1.1517 19 6 3.0461 -10.2926 -1.0789 20 1 3.9410 -10.9104 -1.0046 21 6 2.2650 -10.6725 -2.3397 22 7 1.8155 -12.0679 -2.2297 23 6 0.9720 -12.2512 -1.0396 24 6 1.7662 -11.8556 0.2080 25 8 2.2212 -10.5069 0.0695 26 6 3.5834 -5.2158 -1.1977 27 6 2.6806 -4.1689 -1.1977 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6245 -2.5571 0.8896 31 1 2.3286 -3.7593 2.1319 32 1 3.9292 -5.6306 2.1319 33 1 4.3330 -9.0843 0.7598 34 1 4.0015 -8.6374 -2.0729 35 1 2.5524 -8.1966 -1.1380 36 1 1.3991 -10.0182 -2.4423 37 1 2.9086 -10.5651 -3.2128 38 1 2.6012 -12.7009 -2.2169 39 1 0.6718 -13.2963 -0.9638 40 1 0.0855 -11.6223 -1.1215 41 1 1.1266 -11.9354 1.0871 42 1 2.6231 -12.5198 0.3199 43 1 3.9383 -5.6228 -2.1330 44 1 2.3304 -3.7579 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886886874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -100.360392 kcal Electronic energy + Delta-G solvation = -27114.650324 eV Core-core repulsion = 23158.422794 eV Total energy + Delta-G solvation = -3956.227530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.14485 -38.79543 -37.17272 -35.80828 -35.71809 -34.86144 -33.67428 -31.68163 -31.54992 -30.57095 -27.65012 -27.42666 -25.10180 -23.72715 -23.05604 -22.32356 -21.58504 -20.88650 -19.42133 -17.88253 -17.47033 -16.92619 -16.90199 -16.48558 -16.43063 -15.69044 -15.31670 -15.25312 -15.07801 -14.51040 -14.37390 -14.09063 -13.91245 -13.64704 -13.11391 -13.06851 -12.95217 -12.77109 -12.23357 -12.14527 -12.03856 -11.94806 -11.81981 -11.70554 -11.66237 -11.53267 -11.48148 -10.97086 -10.89905 -10.62652 -10.53482 -10.47366 -9.82916 -9.71736 -9.57405 -8.76940 -8.58353 -8.53255 -8.38101 -6.16834 -4.21932 0.49454 1.33269 1.80265 2.99938 3.22240 3.26286 3.30412 3.33918 3.65373 3.75408 4.10695 4.21821 4.32617 4.37872 4.48892 4.54176 4.59984 4.69687 4.84067 4.96290 5.10969 5.16663 5.21725 5.24097 5.25056 5.34810 5.42587 5.51468 5.64779 5.72858 5.83721 5.91842 6.25545 6.30000 6.33572 6.51094 6.65805 6.74306 6.80716 6.84485 6.91552 7.29578 7.43662 7.59465 7.78051 8.13506 8.82590 9.42936 10.93170 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002580 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.971913 B =10849.300279 C =11817.986808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.040 3.960 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.020 4.020 13 C -0.704 4.704 14 S 2.699 3.301 15 O -0.965 6.965 16 O -0.966 6.966 17 N -1.116 6.116 18 C 0.128 3.872 19 C 0.046 3.954 20 H 0.068 0.932 21 C 0.025 3.975 22 N -0.681 5.681 23 C 0.018 3.982 24 C 0.022 3.978 25 O -0.371 6.371 26 C -0.026 4.026 27 C -0.145 4.145 28 H 0.265 0.735 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.419 0.581 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.341 0.659 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.130 0.870 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -25.487 -2.191 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.026 3.974 11 C -0.165 4.165 12 C -0.040 4.040 13 C -0.793 4.793 14 S 2.792 3.208 15 O -0.956 6.956 16 O -0.955 6.955 17 N -0.875 5.875 18 C 0.001 3.999 19 C -0.015 4.015 20 H 0.086 0.914 21 C -0.106 4.106 22 N -0.309 5.309 23 C -0.112 4.112 24 C -0.057 4.057 25 O -0.289 6.289 26 C -0.045 4.045 27 C -0.164 4.164 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.254 0.746 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.870 -24.976 -2.679 25.416 hybrid contribution 0.404 0.915 0.989 1.406 sum 4.273 -24.061 -1.690 24.496 Atomic orbital electron populations 1.69937 1.06068 1.27238 1.49748 1.25002 0.94930 0.99381 0.94807 0.86536 0.79513 0.82430 0.78891 1.20027 1.21105 1.20042 1.20931 0.93061 0.89485 1.52138 0.92345 1.18533 0.92641 0.89500 0.99029 1.21121 0.92180 0.91990 0.92067 1.21249 0.99093 0.97200 0.98908 1.20768 0.93039 0.94406 0.95765 1.30285 1.25247 1.23855 0.99940 1.01515 0.73349 0.72620 0.73328 1.93568 1.71668 1.86460 1.43885 1.93553 1.70971 1.86508 1.44516 1.55478 1.64279 1.39800 1.27981 1.21275 0.95181 0.94471 0.88937 1.23044 0.93479 0.96902 0.88043 0.91450 1.22701 1.00625 0.90430 0.96806 1.60851 1.24659 1.05298 1.40109 1.22712 0.97353 1.02883 0.88223 1.23303 0.98459 0.84017 0.99904 1.88127 1.68360 1.27719 1.44721 1.20778 0.93353 0.94737 0.95661 1.21241 0.99061 0.97243 0.98871 0.92567 0.94705 0.94736 0.85357 0.85279 0.74640 0.88566 0.90289 0.89103 0.88884 0.84118 0.89500 0.89549 0.88055 0.93162 0.85265 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.09 9.09 -34.44 -0.31 -14.40 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 0.97 5.10 -29.03 -0.15 0.83 16 10 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 11 C -0.15 -2.74 9.70 -39.58 -0.38 -3.12 16 12 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 13 C -0.70 -11.04 5.95 -39.58 -0.24 -11.28 16 14 S 2.70 36.86 5.74 -107.50 -0.62 36.25 16 15 O -0.97 -15.62 17.28 -57.17 -0.99 -16.61 16 16 O -0.97 -15.03 16.75 -57.17 -0.96 -15.99 16 17 N -1.12 -11.28 5.96 -10.61 -0.06 -11.34 16 18 C 0.13 1.12 5.89 -4.04 -0.02 1.09 16 19 C 0.05 0.34 2.89 -26.68 -0.08 0.27 16 20 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 21 C 0.02 0.16 6.05 -3.71 -0.02 0.14 16 22 N -0.68 -4.24 6.93 -113.49 -0.79 -5.02 16 23 C 0.02 0.10 6.76 -3.71 -0.03 0.08 16 24 C 0.02 0.13 7.01 37.21 0.26 0.39 16 25 O -0.37 -3.28 10.27 -35.23 -0.36 -3.64 16 26 C -0.03 -0.41 9.52 -39.58 -0.38 -0.79 16 27 C -0.15 -2.67 9.70 -39.58 -0.38 -3.06 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.13 1.87 7.62 -52.49 -0.40 1.47 16 33 H 0.42 3.71 8.51 -34.48 -0.29 3.42 16 34 H 0.10 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.34 1.63 8.89 -39.29 -0.35 1.28 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.13 1.72 7.61 -52.48 -0.40 1.32 16 44 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -33.86 378.66 -11.54 -45.40 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.45 Total: 2.90 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -2.73 Total: -28.95 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.11 Total: -41.21 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -2.31 Total: -36.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 36.86 SS G_CDS: -0.62 Total: 36.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.86 -11.54 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886886874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.965 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds