Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48497 * 109.47254 * 240.00285 * 3 2 1 5 5 H 1.48499 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46666 * 120.00019 * 3 2 1 7 7 C 1.37881 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.38231 * 119.99817 * 90.00521 * 10 9 7 12 12 C 1.38238 * 119.99893 * 180.02562 * 11 10 9 13 13 C 1.38233 * 119.99951 * 0.02562 * 12 11 10 14 14 S 1.76198 * 120.00090 * 179.97438 * 13 12 11 15 15 O 1.42097 * 106.40257 * 336.46063 * 14 13 12 16 16 O 1.42096 * 106.40421 * 203.53658 * 14 13 12 17 17 N 1.65608 * 107.21920 * 89.99696 * 14 13 12 18 18 C 1.46505 * 119.99467 * 64.99925 * 17 14 13 19 19 C 1.52999 * 109.46656 * 165.00330 * 18 17 14 20 20 H 1.09004 * 109.51036 * 304.91274 * 19 18 17 21 21 C 1.53103 * 109.50786 * 184.78596 * 19 18 17 22 22 N 1.47010 * 109.26073 * 183.21906 * 21 19 18 23 23 C 1.47016 * 110.75668 * 58.60657 * 22 21 19 24 24 C 1.53096 * 109.25942 * 301.38999 * 23 22 21 25 25 O 1.43012 * 109.51188 * 65.00081 * 19 18 17 26 26 C 1.38237 * 120.00053 * 0.25165 * 13 12 11 27 27 C 1.38236 * 120.00019 * 359.49236 * 26 13 12 28 28 H 0.97005 * 120.00165 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47091 * 60.01233 * 9 7 2 30 30 H 1.08996 * 109.47749 * 300.00600 * 9 7 2 31 31 H 1.08003 * 120.00230 * 359.97438 * 11 10 9 32 32 H 1.07999 * 120.00321 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00363 * 245.00427 * 17 14 13 34 34 H 1.08996 * 109.47160 * 45.00626 * 18 17 14 35 35 H 1.08998 * 109.47565 * 284.99583 * 18 17 14 36 36 H 1.09008 * 109.50058 * 303.15002 * 21 19 18 37 37 H 1.08995 * 109.50552 * 63.27759 * 21 19 18 38 38 H 1.00905 * 110.99671 * 294.83705 * 22 21 19 39 39 H 1.08999 * 109.50851 * 181.44676 * 23 22 21 40 40 H 1.09004 * 109.50278 * 61.32439 * 23 22 21 41 41 H 1.09001 * 109.50487 * 176.77808 * 24 23 22 42 42 H 1.08996 * 109.50808 * 296.86767 * 24 23 22 43 43 H 1.08003 * 119.99998 * 179.73772 * 26 13 12 44 44 H 1.07998 * 120.00098 * 180.23241 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6793 -4.1700 1.1966 12 6 3.5780 -5.2203 1.1966 13 6 4.0281 -5.7449 -0.0005 14 16 5.1741 -7.0833 -0.0005 15 8 5.8481 -7.0344 1.2495 16 8 5.8491 -7.0336 -1.2500 17 7 4.2914 -8.4845 -0.0013 18 6 3.4478 -8.8180 -1.1517 19 6 3.0461 -10.2926 -1.0789 20 1 3.9410 -10.9104 -1.0046 21 6 2.2650 -10.6725 -2.3397 22 7 1.8155 -12.0679 -2.2297 23 6 0.9720 -12.2512 -1.0396 24 6 1.7662 -11.8556 0.2080 25 8 2.2212 -10.5069 0.0695 26 6 3.5834 -5.2158 -1.1977 27 6 2.6806 -4.1689 -1.1977 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6245 -2.5571 0.8896 31 1 2.3286 -3.7593 2.1319 32 1 3.9292 -5.6306 2.1319 33 1 4.3330 -9.0843 0.7598 34 1 4.0015 -8.6374 -2.0729 35 1 2.5524 -8.1966 -1.1380 36 1 1.3991 -10.0182 -2.4423 37 1 2.9086 -10.5651 -3.2128 38 1 2.6012 -12.7009 -2.2169 39 1 0.6718 -13.2963 -0.9638 40 1 0.0855 -11.6223 -1.1215 41 1 1.1266 -11.9354 1.0871 42 1 2.6231 -12.5198 0.3199 43 1 3.9383 -5.6228 -2.1330 44 1 2.3304 -3.7579 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886886874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -126.836624 kcal Electronic energy + Delta-G solvation = -27115.798419 eV Core-core repulsion = 23158.422794 eV Total energy + Delta-G solvation = -3957.375625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67435 -40.22812 -38.36454 -36.98764 -36.47197 -35.59868 -35.40164 -33.32034 -32.26536 -31.95845 -29.24851 -28.22836 -25.64318 -25.59609 -23.80789 -23.53185 -22.48749 -22.08365 -20.50756 -19.02656 -18.60475 -18.46028 -17.64924 -17.50197 -17.18230 -16.85006 -16.50249 -16.18800 -15.98869 -15.75389 -15.69355 -15.26728 -14.75565 -14.63983 -14.44830 -14.41850 -13.94351 -13.73489 -13.53040 -13.41506 -13.38144 -13.22500 -13.16198 -12.84794 -12.66997 -12.65810 -12.32082 -12.26080 -12.13702 -12.03730 -12.03361 -11.70006 -11.44488 -11.14821 -10.65558 -10.54187 -9.96037 -9.95136 -9.24672 -8.27444 -6.40389 -0.63293 -0.06100 0.40156 1.38155 1.39874 1.48351 1.98405 2.34428 2.55874 2.67246 2.82910 3.05091 3.21154 3.31566 3.72757 3.78323 3.88971 3.97886 4.00160 4.13474 4.15974 4.20513 4.36963 4.44418 4.47430 4.49433 4.56498 4.67240 4.81344 4.82318 4.88933 4.91228 4.98930 5.08300 5.10692 5.24577 5.25447 5.33547 5.66432 5.84279 5.86206 5.92615 6.02873 6.09481 6.15699 6.37543 6.71212 7.28637 8.82497 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002580 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.971913 B =10849.300279 C =11817.986808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.004 4.004 11 C -0.157 4.157 12 C -0.020 4.020 13 C -0.701 4.701 14 S 2.730 3.270 15 O -0.987 6.987 16 O -0.978 6.978 17 N -1.101 6.101 18 C 0.117 3.883 19 C 0.050 3.950 20 H 0.080 0.920 21 C 0.027 3.973 22 N -0.687 5.687 23 C 0.020 3.980 24 C 0.019 3.981 25 O -0.395 6.395 26 C -0.019 4.019 27 C -0.154 4.154 28 H 0.268 0.732 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.428 0.572 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.351 0.649 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.161 0.839 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -27.264 -2.689 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.004 4.004 11 C -0.176 4.176 12 C -0.039 4.039 13 C -0.788 4.788 14 S 2.819 3.181 15 O -0.977 6.977 16 O -0.968 6.968 17 N -0.864 5.864 18 C -0.009 4.009 19 C -0.011 4.011 20 H 0.098 0.902 21 C -0.104 4.104 22 N -0.316 5.316 23 C -0.109 4.109 24 C -0.059 4.059 25 O -0.315 6.315 26 C -0.038 4.038 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.264 0.736 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.170 0.830 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.179 0.821 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.604 -26.749 -3.172 27.513 hybrid contribution -0.139 1.289 1.136 1.724 sum 5.466 -25.460 -2.036 26.119 Atomic orbital electron populations 1.70050 1.07553 1.28229 1.50656 1.25873 0.95770 1.02983 0.94329 0.85513 0.78344 0.78159 0.79157 1.19260 1.20368 1.19433 1.21260 0.93057 0.91022 1.51898 0.92788 1.18256 0.92980 0.90768 0.96818 1.20825 0.93280 0.92317 0.93986 1.21292 0.99949 0.98135 0.98228 1.21005 0.92144 0.93460 0.97295 1.30801 1.24334 1.24220 0.99469 1.00673 0.72662 0.72370 0.72359 1.93538 1.72375 1.86871 1.44939 1.93537 1.71322 1.86816 1.45109 1.55155 1.64085 1.38196 1.28930 1.21542 0.94994 0.95570 0.88794 1.23050 0.93890 0.95998 0.88113 0.90199 1.22686 1.00306 0.90458 0.96956 1.60848 1.25174 1.05297 1.40325 1.22697 0.96712 1.03561 0.87969 1.23433 0.99057 0.83126 1.00272 1.88085 1.68778 1.29286 1.45346 1.21080 0.92025 0.93443 0.97211 1.21321 0.99766 0.98077 0.98123 0.92356 0.96759 0.97053 0.85497 0.83000 0.73577 0.87037 0.90705 0.90328 0.87416 0.83033 0.87833 0.91001 0.87564 0.91901 0.82131 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -29.95 9.09 25.60 0.23 -29.71 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.05 2.52 5.10 29.10 0.15 2.67 16 10 C 0.00 -0.16 5.07 -19.86 -0.10 -0.26 16 11 C -0.16 -6.00 9.70 22.27 0.22 -5.79 16 12 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 13 C -0.70 -20.73 5.95 22.27 0.13 -20.60 16 14 S 2.73 67.66 5.74 -56.49 -0.32 67.34 16 15 O -0.99 -29.62 17.28 -128.00 -2.21 -31.83 16 16 O -0.98 -27.58 16.75 -128.00 -2.14 -29.72 16 17 N -1.10 -19.37 5.96 -187.49 -1.12 -20.49 16 18 C 0.12 1.75 5.89 86.38 0.51 2.26 16 19 C 0.05 0.63 2.89 30.63 0.09 0.72 16 20 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 21 C 0.03 0.29 6.05 86.32 0.52 0.82 16 22 N -0.69 -7.16 6.93 -512.98 -3.55 -10.72 16 23 C 0.02 0.20 6.76 86.31 0.58 0.78 16 24 C 0.02 0.20 7.01 72.01 0.50 0.70 16 25 O -0.40 -6.31 10.27 -148.98 -1.53 -7.84 16 26 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 27 C -0.15 -5.68 9.70 22.27 0.22 -5.47 16 28 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 29 H 0.01 0.77 8.09 -2.38 -0.02 0.75 16 30 H 0.01 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.15 4.12 7.62 -2.91 -0.02 4.10 16 33 H 0.43 6.44 8.51 -96.75 -0.82 5.62 16 34 H 0.11 1.35 7.75 -2.39 -0.02 1.33 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.35 2.48 8.89 -89.69 -0.80 1.68 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.90 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.16 3.81 7.61 -2.91 -0.02 3.79 16 44 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -72.94 378.66 -5.23 -78.17 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.60 Total: 17.22 kcal Atomic # 6 Polarization: -57.59 SS G_CDS: 3.94 Total: -53.65 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -4.39 Total: -85.47 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -5.89 Total: -69.39 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 67.66 SS G_CDS: -0.32 Total: 67.34 kcal Total: -72.94 -5.23 -78.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886886874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.670 kcal (2) G-P(sol) polarization free energy of solvation -72.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds