Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 11 11 C 1.38233 * 119.99513 * 269.72821 * 10 9 7 12 12 C 1.38243 * 119.99590 * 179.78852 * 11 10 9 13 13 C 1.38232 * 119.99899 * 0.45709 * 12 11 10 14 14 S 1.76205 * 119.99997 * 179.79319 * 13 12 11 15 15 O 1.42098 * 106.39835 * 23.51589 * 14 13 12 16 16 O 1.42094 * 106.39996 * 156.43611 * 14 13 12 17 17 N 1.65595 * 107.21505 * 269.97882 * 14 13 12 18 18 C 1.46503 * 120.00304 * 64.99919 * 17 14 13 19 19 C 1.53006 * 109.47106 * 164.99699 * 18 17 14 20 20 H 1.09005 * 109.50525 * 65.08877 * 19 18 17 21 21 C 1.53088 * 109.50465 * 185.21790 * 19 18 17 22 22 O 1.43022 * 109.25948 * 176.78372 * 21 19 18 23 23 C 1.43017 * 113.73932 * 301.33256 * 22 21 19 24 24 C 1.53103 * 109.25840 * 58.66515 * 23 22 21 25 25 N 1.47009 * 109.50730 * 305.00451 * 19 18 17 26 26 C 1.38237 * 120.00316 * 359.77190 * 13 12 11 27 27 C 1.38233 * 120.00153 * 89.99354 * 10 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.07998 * 120.00201 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.99953 * 180.24469 * 12 11 10 33 33 H 0.97009 * 119.99770 * 244.99679 * 17 14 13 34 34 H 1.08997 * 109.47140 * 284.99815 * 18 17 14 35 35 H 1.08996 * 109.46732 * 45.00000 * 18 17 14 36 36 H 1.09001 * 109.51326 * 296.71804 * 21 19 18 37 37 H 1.08998 * 109.51021 * 56.85085 * 21 19 18 38 38 H 1.09004 * 109.50350 * 298.73371 * 23 22 21 39 39 H 1.08993 * 109.50664 * 178.60158 * 23 22 21 40 40 H 1.08998 * 109.50632 * 183.21884 * 24 23 22 41 41 H 1.08997 * 109.50095 * 63.08782 * 24 23 22 42 42 H 1.00911 * 110.99850 * 305.22207 * 25 19 18 43 43 H 1.07999 * 120.00269 * 180.02562 * 26 13 12 44 44 H 1.08001 * 119.99962 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0139 -2.6150 -0.0013 11 6 4.2492 -3.2659 1.1952 12 6 4.7058 -4.5708 1.1940 13 6 4.9362 -5.2212 -0.0038 14 16 5.5234 -6.8826 -0.0054 15 8 5.1443 -7.4433 1.2440 16 8 5.1433 -7.4412 -1.2554 17 7 7.1781 -6.8175 -0.0059 18 6 7.8894 -6.2538 1.1441 19 6 9.3675 -6.6422 1.0699 20 1 9.8226 -6.1772 0.1954 21 6 10.0854 -6.1655 2.3352 22 8 11.4486 -6.5962 2.2949 23 6 11.6015 -8.0147 2.1948 24 6 10.8988 -8.5102 0.9280 25 7 9.4864 -8.1038 0.9665 26 6 4.7054 -4.5686 -1.2004 27 6 4.2446 -3.2653 -1.1991 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 4.0734 -2.7562 2.1309 32 1 4.8859 -5.0807 2.1288 33 1 7.6764 -7.1526 -0.7678 34 1 7.7980 -5.1678 1.1313 35 1 7.4571 -6.6440 2.0655 36 1 10.0490 -5.0772 2.3863 37 1 9.5960 -6.5882 3.2126 38 1 11.1560 -8.4912 3.0682 39 1 12.6613 -8.2639 2.1443 40 1 10.9636 -9.5971 0.8774 41 1 11.3790 -8.0750 0.0517 42 1 8.9992 -8.5607 1.7228 43 1 4.8850 -5.0770 -2.1362 44 1 4.0645 -2.7554 -2.1339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886889152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -123.591027 kcal Electronic energy + Delta-G solvation = -27076.887344 eV Core-core repulsion = 23119.652458 eV Total energy + Delta-G solvation = -3957.234886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.65599 -40.23480 -38.32192 -37.00917 -36.91527 -35.53501 -34.75927 -33.53542 -32.24796 -31.95001 -29.69557 -27.77335 -26.18151 -25.26905 -23.78460 -23.48059 -22.30093 -22.02754 -20.44646 -19.02860 -18.97383 -18.45013 -17.67481 -17.09207 -16.85624 -16.74491 -16.42996 -16.33572 -16.09337 -15.97354 -15.69591 -15.31414 -15.02527 -14.61349 -14.44755 -14.35751 -14.12171 -13.69265 -13.61781 -13.46109 -13.37537 -13.19073 -13.12233 -12.89703 -12.55633 -12.51222 -12.28872 -12.18342 -12.06255 -11.95383 -11.92252 -11.71589 -11.52240 -11.13608 -10.82563 -10.42705 -9.94693 -9.92149 -9.22660 -8.33484 -6.40673 -0.58734 -0.05972 0.40890 1.36200 1.38218 1.49524 2.06301 2.32655 2.57229 2.82791 2.86438 3.00897 3.14730 3.35164 3.71352 3.82608 3.89775 3.99725 4.03623 4.09477 4.16142 4.22831 4.41438 4.44236 4.47778 4.50637 4.59299 4.72892 4.80150 4.82748 4.84346 4.86886 5.00565 5.03016 5.08372 5.11773 5.18850 5.30518 5.49770 5.79149 5.88937 5.95424 6.12050 6.18135 6.19305 6.35300 6.65990 7.23155 8.82900 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.002525 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.481612 B =11086.096074 C =12144.031195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.242 1.242 6 H -0.285 1.285 7 C -0.526 4.526 8 H 0.026 0.974 9 C 0.012 3.988 10 C -0.003 4.003 11 C -0.153 4.153 12 C -0.021 4.021 13 C -0.699 4.699 14 S 2.729 3.271 15 O -0.983 6.983 16 O -0.990 6.990 17 N -1.091 6.091 18 C 0.117 3.883 19 C 0.055 3.945 20 H 0.098 0.902 21 C 0.025 3.975 22 O -0.401 6.401 23 C 0.016 3.984 24 C 0.025 3.975 25 N -0.684 5.684 26 C -0.022 4.022 27 C -0.156 4.156 28 H 0.269 0.731 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.136 0.864 32 H 0.159 0.841 33 H 0.430 0.570 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.348 0.652 43 H 0.153 0.847 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.375 -15.056 3.703 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.165 1.165 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.044 0.956 9 C -0.025 4.025 10 C -0.004 4.004 11 C -0.172 4.172 12 C -0.040 4.040 13 C -0.786 4.786 14 S 2.818 3.182 15 O -0.973 6.973 16 O -0.980 6.980 17 N -0.854 5.854 18 C -0.010 4.010 19 C -0.057 4.057 20 H 0.116 0.884 21 C -0.054 4.054 22 O -0.319 6.319 23 C -0.062 4.062 24 C -0.105 4.105 25 N -0.315 5.315 26 C -0.041 4.041 27 C -0.175 4.175 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.268 0.732 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.166 0.834 43 H 0.170 0.830 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 25.686 -15.531 3.167 30.183 hybrid contribution -0.311 1.488 0.519 1.606 sum 25.375 -14.043 3.685 29.235 Atomic orbital electron populations 1.70061 1.08453 1.28445 1.51745 1.26026 0.95629 1.03576 0.93738 0.85605 0.79533 0.77745 0.79468 1.18803 1.16494 1.21071 1.21066 0.90566 0.93074 1.51632 0.95571 1.18827 0.94427 0.90721 0.98568 1.20589 0.88947 0.96825 0.93994 1.21370 1.01747 0.95793 0.98289 1.21072 0.92361 0.93441 0.97148 1.30854 1.21914 1.26364 0.99484 1.00659 0.72543 0.72746 0.72222 1.93530 1.82437 1.75973 1.45354 1.93535 1.82250 1.77166 1.45075 1.54947 1.23727 1.77931 1.28804 1.21466 0.91645 0.99442 0.88402 1.22316 0.94547 0.89575 0.99270 0.88360 1.23333 0.82755 1.02252 0.97108 1.88068 1.25856 1.23240 1.94770 1.23455 1.03327 0.81173 0.98287 1.22686 0.87727 1.02349 0.97699 1.60830 1.12874 1.05812 1.51962 1.21025 0.92311 0.93484 0.97294 1.21347 1.01937 0.95798 0.98378 0.92244 0.94226 0.94103 0.84643 0.82373 0.73209 0.89239 0.89593 0.87002 0.91823 0.92467 0.87326 0.87997 0.90285 0.83363 0.82967 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.01 0.44 5.47 84.66 0.46 0.91 16 3 Si 0.95 42.15 27.47 68.60 1.88 44.04 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -29.59 9.65 25.60 0.25 -29.35 16 8 H 0.03 1.67 7.98 -2.91 -0.02 1.65 16 9 C 0.01 0.52 4.17 29.10 0.12 0.64 16 10 C 0.00 -0.13 5.07 -19.86 -0.10 -0.23 16 11 C -0.15 -5.23 9.70 22.27 0.22 -5.01 16 12 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 13 C -0.70 -19.52 5.95 22.27 0.13 -19.39 16 14 S 2.73 65.43 5.74 -56.49 -0.32 65.11 16 15 O -0.98 -27.80 16.75 -128.00 -2.14 -29.95 16 16 O -0.99 -29.58 17.28 -128.00 -2.21 -31.80 16 17 N -1.09 -16.83 5.74 -187.48 -1.08 -17.90 16 18 C 0.12 1.40 5.85 86.38 0.51 1.90 16 19 C 0.05 0.58 2.76 44.93 0.12 0.70 16 20 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 21 C 0.02 0.26 6.29 72.01 0.45 0.72 16 22 O -0.40 -5.81 10.83 -148.98 -1.61 -7.42 16 23 C 0.02 0.15 7.01 72.02 0.50 0.65 16 24 C 0.02 0.21 6.76 86.32 0.58 0.80 16 25 N -0.68 -7.26 6.25 -490.71 -3.06 -10.33 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 27 C -0.16 -5.50 9.70 22.27 0.22 -5.29 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.04 1.70 7.14 -2.38 -0.02 1.68 16 30 H 0.04 1.71 7.51 -2.39 -0.02 1.69 16 31 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.16 3.57 7.62 -2.91 -0.02 3.55 16 33 H 0.43 5.66 8.58 -96.74 -0.83 4.83 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 0.98 7.75 -2.39 -0.02 0.96 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.35 3.45 8.79 -89.69 -0.79 2.66 16 43 H 0.15 3.86 7.62 -2.91 -0.02 3.84 16 44 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -76.23 374.75 -5.01 -81.24 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.65 Total: 19.01 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 3.89 Total: -53.78 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -3.84 Total: -86.44 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -5.97 Total: -69.17 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: 65.43 SS G_CDS: -0.32 Total: 65.11 kcal Total: -76.23 -5.01 -81.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886889152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.349 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds