Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37976 * 120.07622 * 2 1 4 4 C 1.38342 * 120.14956 * 180.27936 * 3 2 1 5 5 C 1.38377 * 120.29879 * 359.69399 * 4 3 2 6 6 C 1.37938 * 120.15376 * 0.02910 * 5 4 3 7 7 C 1.39598 * 120.07810 * 179.72188 * 2 1 3 8 8 C 1.47647 * 120.14618 * 0.02562 * 7 2 1 9 9 N 1.29075 * 125.86464 * 359.70123 * 8 7 2 10 10 O 1.41395 * 112.87589 * 180.29382 * 9 8 7 11 11 C 1.44204 * 107.58995 * 342.50879 * 10 9 8 12 12 H 1.08997 * 110.97235 * 143.55372 * 11 10 9 13 13 C 1.50700 * 110.97031 * 267.28474 * 11 10 9 14 14 O 1.21299 * 120.00206 * 3.54568 * 13 11 10 15 15 N 1.34776 * 119.99981 * 183.55217 * 13 11 10 16 16 C 1.40600 * 119.99837 * 180.02562 * 15 13 11 17 17 C 1.40647 * 126.08292 * 359.96885 * 16 15 13 18 18 N 1.30908 * 108.38414 * 179.77891 * 17 16 15 19 19 N 1.40068 * 108.40958 * 0.38281 * 18 17 16 20 20 C 1.37322 * 126.06817 * 179.87734 * 19 18 17 21 21 H 1.08001 * 119.99374 * 185.47624 * 20 19 18 22 22 C 1.38983 * 120.00403 * 5.47895 * 20 19 18 23 23 N 1.31303 * 119.99812 * 354.02260 * 22 20 19 24 24 Si 1.86797 * 120.00254 * 174.02026 * 22 20 19 25 25 H 1.48502 * 109.47208 * 275.01473 * 24 22 20 26 26 H 1.48497 * 109.47201 * 35.01321 * 24 22 20 27 27 H 1.48500 * 109.47387 * 155.01812 * 24 22 20 28 28 C 1.35684 * 126.08027 * 179.97438 * 16 15 13 29 29 C 1.51682 * 125.86576 * 179.67281 * 8 7 2 30 30 H 1.09000 * 109.46731 * 270.27932 * 1 2 3 31 31 H 1.08992 * 109.46846 * 30.27775 * 1 2 3 32 32 H 1.09004 * 109.47109 * 150.28119 * 1 2 3 33 33 H 1.08002 * 119.92799 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.84704 * 179.72019 * 4 3 2 35 35 H 1.08001 * 119.92164 * 180.02562 * 5 4 3 36 36 H 1.07994 * 120.07443 * 179.97438 * 6 5 4 37 37 H 0.96999 * 120.00547 * 359.97438 * 15 13 11 38 38 H 1.08000 * 125.80834 * 0.02562 * 17 16 15 39 39 H 0.97000 * 119.99954 * 179.97438 * 23 22 20 40 40 H 1.08001 * 126.24284 * 0.02562 * 28 16 15 41 41 H 1.08996 * 110.79613 * 77.15036 * 29 8 7 42 42 H 1.09008 * 110.79213 * 313.68024 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1958 -0.0058 5 6 4.2816 0.0019 -0.0053 6 6 3.6029 -1.1989 0.0004 7 6 2.2067 -1.2080 0.0059 8 6 1.4734 -2.4895 0.0115 9 7 0.1900 -2.6264 0.0171 10 8 -0.2184 -3.9801 0.0282 11 6 0.9095 -4.7789 -0.3833 12 1 0.9396 -5.7218 0.1626 13 6 0.8853 -5.0204 -1.8706 14 8 0.0258 -4.5061 -2.5547 15 7 1.8186 -5.8081 -2.4406 16 6 1.7963 -6.0330 -3.8284 17 6 0.8636 -5.5039 -4.7384 18 7 1.1686 -5.9313 -5.9376 19 7 2.2982 -6.7537 -5.8400 20 6 2.9234 -7.3953 -6.8808 21 1 3.7367 -8.0781 -6.6837 22 6 2.5098 -7.1659 -8.1877 23 7 1.4483 -6.4291 -8.4205 24 14 3.4640 -7.9059 -9.6129 25 1 4.5977 -7.0139 -9.9657 26 1 3.9869 -9.2389 -9.2195 27 1 2.5662 -8.0529 -10.7866 28 6 2.6708 -6.7992 -4.5278 29 6 2.0990 -3.8713 0.0111 30 1 -0.3633 0.0050 1.0277 31 1 -0.3633 0.8874 -0.5181 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6585 2.1294 -0.0004 34 1 4.1182 2.1332 -0.0104 35 1 5.3615 0.0104 -0.0095 36 1 4.1502 -2.1299 0.0004 37 1 2.5061 -6.2193 -1.8937 38 1 0.0386 -4.8524 -4.4906 39 1 1.1598 -6.2687 -9.3327 40 1 3.5083 -7.3461 -4.1204 41 1 2.4696 -4.1286 1.0033 42 1 2.8964 -3.9349 -0.7294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906463897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = 106.127101 kcal Electronic energy + Delta-G solvation = -28214.488564 eV Core-core repulsion = 24164.063804 eV Total energy + Delta-G solvation = -4050.424760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91084 -39.80872 -39.26526 -37.97837 -34.35839 -33.99087 -33.26408 -32.81594 -31.05461 -30.46677 -30.19201 -27.81757 -27.19884 -25.28444 -24.17260 -23.62883 -21.76731 -21.15097 -20.58474 -19.83600 -19.46722 -17.83134 -17.24994 -17.00314 -16.23477 -15.91112 -15.51990 -15.33760 -15.19780 -14.94416 -14.52821 -14.32827 -13.94831 -13.83316 -13.51424 -13.33986 -13.23112 -13.07609 -12.88438 -12.45052 -12.39644 -12.23874 -12.07087 -11.70827 -11.62856 -11.46761 -11.34636 -11.27964 -10.98271 -10.62571 -10.55822 -10.26736 -10.20360 -9.20242 -9.17939 -9.00773 -8.83519 -8.63081 -8.08641 -6.75129 -6.58214 -4.25604 0.49477 1.10396 2.04623 2.59207 2.92739 3.02922 3.04586 3.08679 3.38351 3.53470 3.63568 3.76527 3.83740 4.20778 4.26049 4.41715 4.60091 4.60782 4.64383 4.74479 4.87919 4.99107 5.03726 5.05167 5.13581 5.24439 5.29065 5.37548 5.53602 5.62048 5.67115 5.71474 6.09573 6.16890 6.20033 6.21806 6.40328 6.40978 6.66768 6.84024 6.92232 7.05005 7.19926 7.23458 7.83219 8.09497 8.23452 8.58070 8.77202 9.35211 9.64054 10.37969 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.002506 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.471738 B =11168.303308 C =11958.135390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 C -0.127 4.127 4 C -0.097 4.097 5 C -0.131 4.131 6 C -0.081 4.081 7 C -0.045 4.045 8 C 0.123 3.877 9 N -0.266 5.266 10 O -0.170 6.170 11 C 0.031 3.969 12 H 0.138 0.862 13 C 0.480 3.520 14 O -0.510 6.510 15 N -0.619 5.619 16 C -0.062 4.062 17 C -0.032 4.032 18 N -0.260 5.260 19 N -0.141 5.141 20 C -0.324 4.324 21 H 0.116 0.884 22 C 0.047 3.953 23 N -0.768 5.768 24 Si 0.935 3.065 25 H -0.270 1.270 26 H -0.264 1.264 27 H -0.276 1.276 28 C -0.083 4.083 29 C -0.138 4.138 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.396 0.604 38 H 0.175 0.825 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 9.465 18.949 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 C -0.145 4.145 4 C -0.116 4.116 5 C -0.149 4.149 6 C -0.102 4.102 7 C -0.046 4.046 8 C -0.066 4.066 9 N -0.008 5.008 10 O -0.186 6.186 11 C -0.032 4.032 12 H 0.155 0.845 13 C 0.264 3.736 14 O -0.385 6.385 15 N -0.263 5.263 16 C -0.167 4.167 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.091 4.909 20 C -0.457 4.457 21 H 0.134 0.866 22 C -0.171 4.171 23 N -0.395 5.395 24 Si 0.759 3.241 25 H -0.195 1.195 26 H -0.189 1.189 27 H -0.201 1.201 28 C -0.234 4.234 29 C -0.178 4.178 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.229 0.771 38 H 0.191 0.809 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.133 0.867 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.290 10.286 17.084 20.631 hybrid contribution 1.920 -1.192 0.470 2.308 sum 7.210 9.095 17.554 21.044 Atomic orbital electron populations 1.21264 0.90077 1.04683 1.03110 1.20177 0.96894 0.91812 0.95399 1.21032 0.94279 0.97450 1.01710 1.21330 0.94240 0.98360 0.97689 1.21055 1.00207 0.92039 1.01561 1.21218 0.92291 0.98939 0.97708 1.17729 0.92496 0.88538 1.05874 1.24206 0.92129 0.94561 0.95675 1.78476 1.13085 0.96969 1.12222 1.91336 1.31558 1.10572 1.85147 1.23558 0.87078 0.98122 0.94409 0.84475 1.20467 0.82937 0.80986 0.89260 1.90657 1.36095 1.48874 1.62838 1.42413 1.29583 1.47635 1.06680 1.17241 1.04629 1.12715 0.82136 1.24106 1.01772 1.05072 0.89760 1.78268 1.01031 1.11327 1.18506 1.44558 1.16161 1.26738 1.03437 1.19856 1.16540 1.25356 0.83899 0.86597 1.25653 0.95937 0.96249 0.99255 1.70223 1.18554 1.28859 1.21819 0.85843 0.79232 0.79520 0.79547 1.19500 1.18854 1.20108 1.21241 1.04793 1.11259 0.86079 1.22992 0.99937 0.89538 1.05325 0.90654 0.91549 0.88010 0.85422 0.85626 0.85339 0.85226 0.77077 0.80860 0.91393 0.83653 0.86729 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 36.01 0.33 -1.19 16 2 C -0.04 -0.46 5.91 -104.21 -0.62 -1.07 16 3 C -0.13 -1.16 9.69 -39.64 -0.38 -1.54 16 4 C -0.10 -0.78 10.04 -39.49 -0.40 -1.17 16 5 C -0.13 -1.05 10.03 -39.64 -0.40 -1.45 16 6 C -0.08 -0.75 9.61 -39.17 -0.38 -1.12 16 7 C -0.05 -0.52 5.87 -105.03 -0.62 -1.14 16 8 C 0.12 1.56 7.05 -79.43 -0.56 1.00 16 9 N -0.27 -4.07 8.97 35.30 0.32 -3.75 16 10 O -0.17 -2.75 11.83 -30.21 -0.36 -3.10 16 11 C 0.03 0.40 4.23 -26.97 -0.11 0.29 16 12 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 13 C 0.48 8.54 7.10 -10.99 -0.08 8.47 16 14 O -0.51 -11.72 13.74 -13.29 -0.18 -11.90 16 15 N -0.62 -10.60 5.47 -10.00 -0.05 -10.65 16 16 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 17 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 18 N -0.26 -7.65 10.42 30.80 0.32 -7.33 16 19 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 20 C -0.32 -8.54 10.24 -14.82 -0.15 -8.70 16 21 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 22 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 23 N -0.77 -21.57 11.84 55.49 0.66 -20.91 16 24 Si 0.93 18.86 29.56 -169.99 -5.02 13.83 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 26 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 29 C -0.14 -1.36 5.81 -26.49 -0.15 -1.52 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.10 1.44 5.19 -51.93 -0.27 1.17 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.90 7.37 -52.49 -0.39 0.51 16 37 H 0.40 4.86 8.83 -40.82 -0.36 4.50 16 38 H 0.17 4.72 5.92 -52.49 -0.31 4.41 16 39 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.11 0.98 7.72 -51.92 -0.40 0.58 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -36.81 362.30 -8.12 -44.93 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.65 Total: 10.52 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -4.56 Total: -13.17 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 1.20 Total: -46.57 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.54 Total: -15.01 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.81 -8.12 -44.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906463897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.059 kcal (2) G-P(sol) polarization free energy of solvation -36.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds