Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37976 * 120.07622 * 2 1 4 4 C 1.38342 * 120.14956 * 180.27936 * 3 2 1 5 5 C 1.38377 * 120.29879 * 359.69399 * 4 3 2 6 6 C 1.37938 * 120.15376 * 0.02910 * 5 4 3 7 7 C 1.39598 * 120.07810 * 179.72188 * 2 1 3 8 8 C 1.47647 * 120.14618 * 0.02562 * 7 2 1 9 9 N 1.29075 * 125.86464 * 359.70123 * 8 7 2 10 10 O 1.41395 * 112.87589 * 180.29382 * 9 8 7 11 11 C 1.44204 * 107.58995 * 342.50879 * 10 9 8 12 12 H 1.08997 * 110.97235 * 143.55372 * 11 10 9 13 13 C 1.50700 * 110.97031 * 267.28474 * 11 10 9 14 14 O 1.21299 * 120.00206 * 3.54568 * 13 11 10 15 15 N 1.34776 * 119.99981 * 183.55217 * 13 11 10 16 16 C 1.40600 * 119.99837 * 180.02562 * 15 13 11 17 17 C 1.40647 * 126.08292 * 359.96885 * 16 15 13 18 18 N 1.30908 * 108.38414 * 179.77891 * 17 16 15 19 19 N 1.40068 * 108.40958 * 0.38281 * 18 17 16 20 20 C 1.37322 * 126.06817 * 179.87734 * 19 18 17 21 21 H 1.08001 * 119.99374 * 185.47624 * 20 19 18 22 22 C 1.38983 * 120.00403 * 5.47895 * 20 19 18 23 23 N 1.31303 * 119.99812 * 354.02260 * 22 20 19 24 24 Si 1.86797 * 120.00254 * 174.02026 * 22 20 19 25 25 H 1.48502 * 109.47208 * 275.01473 * 24 22 20 26 26 H 1.48497 * 109.47201 * 35.01321 * 24 22 20 27 27 H 1.48500 * 109.47387 * 155.01812 * 24 22 20 28 28 C 1.35684 * 126.08027 * 179.97438 * 16 15 13 29 29 C 1.51682 * 125.86576 * 179.67281 * 8 7 2 30 30 H 1.09000 * 109.46731 * 270.27932 * 1 2 3 31 31 H 1.08992 * 109.46846 * 30.27775 * 1 2 3 32 32 H 1.09004 * 109.47109 * 150.28119 * 1 2 3 33 33 H 1.08002 * 119.92799 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.84704 * 179.72019 * 4 3 2 35 35 H 1.08001 * 119.92164 * 180.02562 * 5 4 3 36 36 H 1.07994 * 120.07443 * 179.97438 * 6 5 4 37 37 H 0.96999 * 120.00547 * 359.97438 * 15 13 11 38 38 H 1.08000 * 125.80834 * 0.02562 * 17 16 15 39 39 H 0.97000 * 119.99954 * 179.97438 * 23 22 20 40 40 H 1.08001 * 126.24284 * 0.02562 * 28 16 15 41 41 H 1.08996 * 110.79613 * 77.15036 * 29 8 7 42 42 H 1.09008 * 110.79213 * 313.68024 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1958 -0.0058 5 6 4.2816 0.0019 -0.0053 6 6 3.6029 -1.1989 0.0004 7 6 2.2067 -1.2080 0.0059 8 6 1.4734 -2.4895 0.0115 9 7 0.1900 -2.6264 0.0171 10 8 -0.2184 -3.9801 0.0282 11 6 0.9095 -4.7789 -0.3833 12 1 0.9396 -5.7218 0.1626 13 6 0.8853 -5.0204 -1.8706 14 8 0.0258 -4.5061 -2.5547 15 7 1.8186 -5.8081 -2.4406 16 6 1.7963 -6.0330 -3.8284 17 6 0.8636 -5.5039 -4.7384 18 7 1.1686 -5.9313 -5.9376 19 7 2.2982 -6.7537 -5.8400 20 6 2.9234 -7.3953 -6.8808 21 1 3.7367 -8.0781 -6.6837 22 6 2.5098 -7.1659 -8.1877 23 7 1.4483 -6.4291 -8.4205 24 14 3.4640 -7.9059 -9.6129 25 1 4.5977 -7.0139 -9.9657 26 1 3.9869 -9.2389 -9.2195 27 1 2.5662 -8.0529 -10.7866 28 6 2.6708 -6.7992 -4.5278 29 6 2.0990 -3.8713 0.0111 30 1 -0.3633 0.0050 1.0277 31 1 -0.3633 0.8874 -0.5181 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6585 2.1294 -0.0004 34 1 4.1182 2.1332 -0.0104 35 1 5.3615 0.0104 -0.0095 36 1 4.1502 -2.1299 0.0004 37 1 2.5061 -6.2193 -1.8937 38 1 0.0386 -4.8524 -4.4906 39 1 1.1598 -6.2687 -9.3327 40 1 3.5083 -7.3461 -4.1204 41 1 2.4696 -4.1286 1.0033 42 1 2.8964 -3.9349 -0.7294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906463897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = 81.675930 kcal Electronic energy + Delta-G solvation = -28215.548846 eV Core-core repulsion = 24164.063804 eV Total energy + Delta-G solvation = -4051.485043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.08993 -41.41186 -40.27259 -39.34318 -36.00960 -35.06727 -34.90308 -33.62618 -32.42551 -31.88171 -31.25095 -29.55400 -28.02528 -26.99676 -25.48410 -24.39230 -22.96599 -22.52675 -22.00309 -21.24805 -20.77487 -19.47370 -18.58097 -18.02598 -17.43954 -17.07498 -16.94695 -16.63640 -16.37636 -15.97141 -15.74579 -15.65996 -15.23507 -15.08019 -14.85245 -14.78403 -14.32487 -14.10438 -13.97734 -13.54389 -13.45459 -13.32751 -13.28867 -13.04006 -13.00466 -12.90977 -12.80329 -12.33377 -12.10188 -12.02063 -11.88809 -11.65872 -11.23625 -11.04113 -10.83794 -10.45964 -10.12788 -9.72681 -9.50081 -8.57137 -8.48513 -6.26322 -0.28458 0.42662 1.13359 1.23254 1.39589 1.43476 1.57534 1.80664 1.89159 2.06679 2.21812 2.46540 2.83129 2.85428 2.93989 3.07459 3.33403 3.37398 3.73443 3.88951 3.96033 4.08092 4.19880 4.39637 4.40774 4.42553 4.49751 4.53670 4.58775 4.63834 4.73081 4.81988 4.87130 4.98935 5.04454 5.06025 5.27316 5.36455 5.39819 5.44026 5.54289 5.60721 5.94441 5.99780 6.24852 6.30305 6.67035 6.71602 7.31303 7.45725 7.65371 8.51078 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.002506 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.471738 B =11168.303308 C =11958.135390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.093 4.093 5 C -0.132 4.132 6 C -0.081 4.081 7 C -0.075 4.075 8 C 0.127 3.873 9 N -0.309 5.309 10 O -0.204 6.204 11 C 0.036 3.964 12 H 0.185 0.815 13 C 0.476 3.524 14 O -0.569 6.569 15 N -0.603 5.603 16 C -0.045 4.045 17 C -0.064 4.064 18 N -0.312 5.312 19 N -0.167 5.167 20 C -0.353 4.353 21 H 0.145 0.855 22 C -0.008 4.008 23 N -0.826 5.826 24 Si 1.020 2.980 25 H -0.263 1.263 26 H -0.242 1.242 27 H -0.280 1.280 28 C -0.074 4.074 29 C -0.128 4.128 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.425 0.575 38 H 0.157 0.843 39 H 0.276 0.724 40 H 0.195 0.805 41 H 0.164 0.836 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 8.724 20.839 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 C -0.154 4.154 4 C -0.112 4.112 5 C -0.150 4.150 6 C -0.101 4.101 7 C -0.077 4.077 8 C -0.061 4.061 9 N -0.053 5.053 10 O -0.219 6.219 11 C -0.026 4.026 12 H 0.201 0.799 13 C 0.262 3.738 14 O -0.448 6.448 15 N -0.250 5.250 16 C -0.151 4.151 17 C -0.239 4.239 18 N -0.145 5.145 19 N 0.064 4.936 20 C -0.484 4.484 21 H 0.162 0.838 22 C -0.219 4.219 23 N -0.454 5.454 24 Si 0.839 3.161 25 H -0.187 1.187 26 H -0.165 1.165 27 H -0.205 1.205 28 C -0.224 4.224 29 C -0.167 4.167 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.263 0.737 38 H 0.174 0.826 39 H 0.085 0.915 40 H 0.212 0.788 41 H 0.181 0.819 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.731 9.512 19.053 23.413 hybrid contribution 0.590 -0.812 0.034 1.004 sum 10.321 8.701 19.087 23.378 Atomic orbital electron populations 1.21168 0.91097 1.03531 1.02994 1.20341 0.96613 0.93002 0.96733 1.21278 0.95226 0.97288 1.01585 1.21745 0.93782 0.99854 0.95835 1.21487 1.01760 0.91516 1.00228 1.21562 0.91250 1.00689 0.96590 1.17979 0.93698 0.88011 1.07965 1.24783 0.91881 0.96496 0.92990 1.78580 1.14855 0.96286 1.15599 1.91304 1.33610 1.11684 1.85260 1.23808 0.87881 1.00503 0.90425 0.79861 1.21622 0.81451 0.79228 0.91487 1.90646 1.38391 1.50867 1.64849 1.42287 1.30510 1.47713 1.04519 1.17298 1.02613 1.10710 0.84477 1.24066 1.02856 1.06196 0.90797 1.78166 1.03038 1.13189 1.20080 1.44870 1.16199 1.27311 1.05211 1.20645 1.17306 1.26132 0.84352 0.83806 1.26930 0.96522 0.96132 1.02359 1.70418 1.21130 1.31405 1.22453 0.84593 0.77299 0.79396 0.74826 1.18739 1.16525 1.20483 1.22041 1.05365 1.10347 0.84677 1.23137 0.98543 0.86694 1.08307 0.90389 0.90668 0.91027 0.83942 0.82798 0.82391 0.82725 0.73699 0.82615 0.91452 0.78800 0.81855 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.18 71.24 0.65 -2.51 16 2 C -0.06 -1.45 5.91 -19.60 -0.12 -1.57 16 3 C -0.14 -2.30 9.69 22.23 0.22 -2.08 16 4 C -0.09 -1.21 10.04 22.33 0.22 -0.99 16 5 C -0.13 -1.65 10.03 22.23 0.22 -1.43 16 6 C -0.08 -1.25 9.61 22.53 0.22 -1.03 16 7 C -0.08 -1.65 5.87 -20.13 -0.12 -1.77 16 8 C 0.13 3.12 7.05 45.76 0.32 3.44 16 9 N -0.31 -9.77 8.97 -42.24 -0.38 -10.15 16 10 O -0.20 -6.72 11.83 -20.32 -0.24 -6.96 16 11 C 0.04 0.86 4.23 30.44 0.13 0.99 16 12 H 0.18 2.58 8.14 -2.39 -0.02 2.56 16 13 C 0.48 16.75 7.10 87.66 0.62 17.37 16 14 O -0.57 -27.49 13.74 14.92 0.21 -27.28 16 15 N -0.60 -19.52 5.47 -303.92 -1.66 -21.18 16 16 C -0.04 -2.04 6.90 37.73 0.26 -1.78 16 17 C -0.06 -3.61 10.85 85.42 0.93 -2.69 16 18 N -0.31 -19.25 10.42 -56.47 -0.59 -19.84 16 19 N -0.17 -9.24 3.74 -190.01 -0.71 -9.95 16 20 C -0.35 -18.52 10.24 84.01 0.86 -17.66 16 21 H 0.14 6.42 7.84 -2.91 -0.02 6.40 16 22 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 23 N -0.83 -48.31 11.84 21.66 0.26 -48.05 16 24 Si 1.02 38.38 29.56 68.60 2.03 40.40 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 26 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 27 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 28 C -0.07 -3.31 11.49 83.38 0.96 -2.36 16 29 C -0.13 -2.10 5.81 30.75 0.18 -1.92 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 32 H 0.07 2.22 5.19 -2.39 -0.01 2.21 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 1.47 7.37 -2.91 -0.02 1.44 16 37 H 0.42 8.72 8.83 -92.71 -0.82 7.90 16 38 H 0.16 9.20 5.92 -2.91 -0.02 9.19 16 39 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.20 6.53 8.06 -2.91 -0.02 6.50 16 41 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.12 1.71 7.72 -2.38 -0.02 1.69 16 Total: -1.00 -89.90 362.30 5.20 -84.70 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.27 Total: 34.22 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 6.02 Total: -15.92 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -3.08 Total: -109.16 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.04 Total: -34.24 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.40 kcal Total: -89.90 5.20 -84.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906463897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.374 kcal (2) G-P(sol) polarization free energy of solvation -89.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds