Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48500 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46895 * 299.99714 * 3 2 1 6 6 H 1.48495 * 109.47064 * 59.99906 * 3 2 1 7 7 C 1.38808 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00272 * 189.09577 * 7 2 1 9 9 N 1.36936 * 120.00188 * 9.10721 * 7 2 1 10 10 C 1.48148 * 127.83329 * 15.56442 * 9 7 2 11 11 C 1.54389 * 104.61369 * 140.42006 * 10 9 7 12 12 H 1.09000 * 117.61860 * 242.76080 * 11 10 9 13 13 C 1.54144 * 104.97020 * 23.83002 * 11 10 9 14 14 H 1.08991 * 121.79152 * 222.19937 * 13 11 10 15 15 C 1.48140 * 127.84259 * 195.57452 * 9 7 2 16 16 C 1.53004 * 59.75346 * 114.13581 * 13 11 10 17 17 H 1.08993 * 117.44502 * 252.37384 * 16 13 11 18 18 N 1.46503 * 117.43903 * 107.62842 * 16 13 11 19 19 C 1.34773 * 119.99747 * 135.99980 * 18 16 13 20 20 O 1.21638 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.47147 * 119.99837 * 179.97438 * 19 18 16 22 22 C 1.37893 * 120.51374 * 359.72644 * 21 19 18 23 23 N 1.34162 * 122.24798 * 179.69524 * 22 21 19 24 24 H 0.96999 * 118.68543 * 180.30189 * 23 22 21 25 25 C 1.37270 * 122.62312 * 0.59502 * 23 22 21 26 26 C 1.39514 * 121.53295 * 179.70964 * 25 23 22 27 27 C 1.37764 * 118.82950 * 180.02562 * 26 25 23 28 28 N 1.32246 * 121.59452 * 359.95387 * 27 26 25 29 29 C 1.31759 * 122.17366 * 0.02562 * 28 27 26 30 30 C 1.39247 * 120.00043 * 0.02562 * 29 28 27 31 31 C 1.47253 * 120.51312 * 179.97438 * 21 19 18 32 32 O 1.21843 * 121.48613 * 0.02673 * 31 21 19 33 33 H 0.96999 * 119.99948 * 359.97438 * 1 2 3 34 34 H 1.08996 * 110.41276 * 21.63653 * 10 9 7 35 35 H 1.09002 * 110.41081 * 259.20027 * 10 9 7 36 36 H 1.09005 * 110.40472 * 338.36140 * 15 9 7 37 37 H 1.08992 * 110.41612 * 100.79201 * 15 9 7 38 38 H 0.96999 * 119.99997 * 315.72199 * 18 16 13 39 39 H 1.08004 * 118.87993 * 359.97438 * 22 21 19 40 40 H 1.08000 * 120.58701 * 0.04293 * 26 25 23 41 41 H 1.08000 * 119.20108 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.00540 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3386 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7103 11 6 0.0640 -3.8172 -1.6164 12 1 -0.1482 -3.6883 -2.6777 13 6 1.2857 -4.5965 -1.0908 14 1 2.0088 -5.0539 -1.7658 15 6 1.8196 -3.7545 0.0887 16 6 -0.1183 -5.1932 -0.9725 17 1 -0.5674 -5.2278 0.0200 18 7 -0.4525 -6.3131 -1.8559 19 6 -1.1060 -7.3854 -1.3666 20 8 -1.4179 -7.4236 -0.1915 21 6 -1.4422 -8.5101 -2.2540 22 6 -1.0986 -8.4754 -3.5890 23 7 -1.3825 -9.4835 -4.4276 24 1 -1.1128 -9.4066 -5.3562 25 6 -2.0445 -10.6167 -4.0253 26 6 -2.3333 -11.6489 -4.9184 27 6 -3.0008 -12.7612 -4.4547 28 7 -3.3700 -12.8703 -3.1895 29 6 -3.1234 -11.9274 -2.3028 30 6 -2.4538 -10.7685 -2.6869 31 6 -2.1554 -9.6875 -1.7313 32 8 -2.4852 -9.7640 -0.5609 33 1 -0.4850 0.8400 0.0004 34 1 -0.3432 -1.7021 -1.2913 35 1 -0.7317 -2.7500 0.1079 36 1 2.9092 -3.7784 0.1106 37 1 1.4117 -4.1182 1.0317 38 1 -0.2070 -6.2810 -2.7937 39 1 -0.5794 -7.6092 -3.9717 40 1 -2.0385 -11.5773 -5.9549 41 1 -3.2278 -13.5636 -5.1410 42 1 -3.4413 -12.0529 -1.2784 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960115541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = 27.159747 kcal Electronic energy + Delta-G solvation = -27749.566017 eV Core-core repulsion = 23695.716975 eV Total energy + Delta-G solvation = -4053.849042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.47770 -41.06710 -39.98208 -39.12288 -38.97330 -36.05850 -34.57727 -33.42869 -32.63311 -32.21024 -31.28173 -28.91122 -27.67779 -26.00713 -25.86849 -23.86955 -23.66406 -22.25376 -21.97398 -20.87344 -19.94996 -19.87566 -19.10655 -18.84647 -17.61828 -17.37061 -16.98761 -16.71594 -16.63148 -16.34469 -16.00484 -15.60086 -15.59468 -15.28912 -15.10402 -14.92634 -14.63140 -14.59867 -14.16900 -14.13539 -13.69753 -13.34181 -13.21526 -13.11358 -12.86788 -12.74381 -12.09334 -11.99631 -11.86893 -11.64895 -11.36378 -11.03280 -11.02689 -10.85273 -10.70353 -10.40521 -10.35166 -9.73930 -9.19718 -8.92261 -7.91378 -5.28554 -0.53700 -0.48181 0.48968 1.47493 1.48346 1.48563 1.58260 1.59792 1.87866 2.28594 2.48946 2.80092 2.93141 2.95112 3.27434 3.28976 3.43571 3.53404 3.60662 3.64770 3.85882 3.87728 3.98002 4.13803 4.18381 4.25716 4.38432 4.43170 4.55679 4.62585 4.67546 4.78877 4.88478 4.99457 5.00698 5.29080 5.30430 5.43076 5.46196 5.56660 5.57015 5.65789 6.00935 6.16917 6.59999 6.72123 6.83717 7.00530 7.33070 7.67359 8.46053 9.22774 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035208 B = 0.001935 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.087683 B =14468.849891 C =14831.046883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.185 3.815 11 C -0.171 4.171 12 H 0.139 0.861 13 C -0.160 4.160 14 H 0.145 0.855 15 C 0.145 3.855 16 C 0.113 3.887 17 H 0.093 0.907 18 N -0.677 5.677 19 C 0.575 3.425 20 O -0.581 6.581 21 C -0.368 4.368 22 C 0.273 3.727 23 N -0.560 5.560 24 H 0.456 0.544 25 C 0.215 3.785 26 C -0.188 4.188 27 C 0.140 3.860 28 N -0.527 5.527 29 C 0.175 3.825 30 C -0.258 4.258 31 C 0.420 3.580 32 O -0.514 6.514 33 H 0.250 0.750 34 H 0.062 0.938 35 H -0.012 1.012 36 H 0.066 0.934 37 H 0.011 0.989 38 H 0.417 0.583 39 H 0.227 0.773 40 H 0.203 0.797 41 H 0.203 0.797 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -25.771 -24.272 35.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.102 0.898 9 N -0.340 5.340 10 C 0.059 3.941 11 C -0.192 4.192 12 H 0.156 0.844 13 C -0.182 4.182 14 H 0.162 0.838 15 C 0.019 3.981 16 C 0.005 3.995 17 H 0.111 0.889 18 N -0.330 5.330 19 C 0.365 3.635 20 O -0.461 6.461 21 C -0.380 4.380 22 C 0.136 3.864 23 N -0.169 5.169 24 H 0.300 0.700 25 C 0.105 3.895 26 C -0.210 4.210 27 C -0.013 4.013 28 N -0.238 5.238 29 C 0.015 3.985 30 C -0.264 4.264 31 C 0.305 3.695 32 O -0.395 6.395 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.006 0.994 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.256 0.744 39 H 0.243 0.757 40 H 0.220 0.780 41 H 0.219 0.781 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.183 -26.409 -22.567 34.807 hybrid contribution 0.537 2.011 0.173 2.088 sum -1.646 -24.398 -22.395 33.159 Atomic orbital electron populations 1.70115 1.06645 1.25721 1.57259 1.25799 0.96512 1.01463 1.02103 0.84949 0.78325 0.78930 0.76703 1.18662 1.21437 1.22266 1.19447 0.91430 0.83384 1.42465 0.89816 1.45501 1.13765 1.01109 1.73669 1.20825 0.85909 0.94134 0.93198 1.24320 1.03476 0.90514 1.00917 0.84366 1.24262 0.90989 1.01452 1.01448 0.83750 1.21285 0.98083 0.84597 0.94120 1.21293 0.97929 0.85268 0.94968 0.88949 1.44854 1.58844 1.16393 1.12863 1.17867 0.76822 0.81847 0.86978 1.90853 1.55066 1.80660 1.19492 1.21481 1.20918 1.00206 0.95414 1.22586 0.85630 0.90487 0.87733 1.40851 1.48640 1.12780 1.14635 0.70035 1.18102 0.91146 0.88260 0.91969 1.22246 1.03764 0.92690 1.02277 1.23554 0.89294 0.97118 0.91368 1.67889 1.21605 1.30029 1.04265 1.22822 0.89314 0.86687 0.99634 1.21121 1.10153 1.00074 0.95082 1.19856 0.76958 0.85340 0.87342 1.90742 1.48390 1.80271 1.20097 0.94109 0.91966 0.99373 0.91596 0.97152 0.74381 0.75722 0.78032 0.78058 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.69 10.86 21.65 0.24 -57.46 16 2 C -0.07 -3.72 5.40 84.86 0.46 -3.26 16 3 Si 0.98 45.38 29.56 68.60 2.03 47.41 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 8 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 9 N -0.62 -32.21 3.38 -688.06 -2.32 -34.54 16 10 C 0.19 9.23 5.70 86.53 0.49 9.72 16 11 C -0.17 -6.04 7.05 -9.93 -0.07 -6.11 16 12 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 13 C -0.16 -5.27 7.05 -9.91 -0.07 -5.33 16 14 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 15 C 0.14 6.17 7.04 86.55 0.61 6.78 16 16 C 0.11 3.76 5.98 44.99 0.27 4.03 16 17 H 0.09 3.94 7.40 -2.39 -0.02 3.92 16 18 N -0.68 -16.03 5.51 -446.06 -2.46 -18.49 16 19 C 0.57 17.78 7.76 86.58 0.67 18.46 16 20 O -0.58 -26.31 15.12 15.07 0.23 -26.08 16 21 C -0.37 -8.03 6.04 -18.65 -0.11 -8.15 16 22 C 0.27 1.47 10.65 84.26 0.90 2.37 16 23 N -0.56 -0.04 5.21 -186.76 -0.97 -1.01 16 24 H 0.46 -4.88 8.76 -92.71 -0.81 -5.70 16 25 C 0.22 1.67 6.68 39.22 0.26 1.93 16 26 C -0.19 -0.28 9.99 22.47 0.22 -0.06 16 27 C 0.14 0.89 11.13 84.52 0.94 1.83 16 28 N -0.53 -8.50 10.34 -195.18 -2.02 -10.52 16 29 C 0.18 3.57 10.86 84.95 0.92 4.49 16 30 C -0.26 -4.99 5.89 -20.02 -0.12 -5.11 16 31 C 0.42 12.11 7.15 27.04 0.19 12.30 16 32 O -0.51 -20.83 15.92 14.41 0.23 -20.60 16 33 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.06 3.43 6.51 -2.39 -0.02 3.42 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.42 4.85 6.83 -92.71 -0.63 4.22 16 39 H 0.23 -1.19 6.30 -2.91 -0.02 -1.21 16 40 H 0.20 -1.83 8.06 -2.91 -0.02 -1.85 16 41 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 42 H 0.16 3.53 7.83 -2.91 -0.02 3.51 16 Total: -1.00 -102.87 358.58 1.05 -101.82 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -0.34 Total: -1.88 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.44 Total: 21.35 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -7.54 Total: -122.02 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: 0.46 Total: -46.68 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -102.87 1.05 -101.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960115541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.983 kcal (2) G-P(sol) polarization free energy of solvation -102.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds