Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47501 * 275.26561 * 3 2 1 5 5 H 1.48498 * 109.47190 * 35.26758 * 3 2 1 6 6 H 1.48501 * 109.46774 * 155.26532 * 3 2 1 7 7 C 1.38814 * 119.99900 * 180.28069 * 2 1 3 8 8 H 1.07999 * 120.00078 * 172.82021 * 7 2 1 9 9 N 1.36938 * 119.99739 * 352.81913 * 7 2 1 10 10 C 1.47873 * 126.94782 * 5.02618 * 9 7 2 11 11 C 1.56020 * 105.10255 * 181.97943 * 10 9 7 12 12 H 1.08997 * 116.24624 * 159.68675 * 11 10 9 13 13 C 1.57081 * 99.60892 * 32.80501 * 11 10 9 14 14 C 1.49297 * 126.94323 * 184.70759 * 9 7 2 15 15 H 1.08999 * 116.14797 * 15.86765 * 14 9 7 16 16 C 1.55476 * 104.35479 * 246.78209 * 14 9 7 17 17 N 1.47868 * 105.17486 * 288.90283 * 16 14 9 18 18 C 1.34768 * 126.94700 * 181.92886 * 17 16 14 19 19 O 1.21488 * 119.99881 * 180.02562 * 18 17 16 20 20 C 1.48381 * 120.00199 * 359.97438 * 18 17 16 21 21 C 1.40106 * 119.24097 * 179.73152 * 20 18 17 22 22 C 1.36780 * 119.88293 * 179.75997 * 21 20 18 23 23 C 1.40284 * 118.12846 * 0.50440 * 22 21 20 24 24 C 1.41114 * 122.05365 * 179.77091 * 23 22 21 25 25 O 1.35457 * 120.13864 * 359.97101 * 24 23 22 26 26 N 1.31762 * 119.72557 * 179.97438 * 24 23 22 27 27 C 1.32644 * 122.57926 * 359.97438 * 26 24 23 28 28 C 1.36007 * 122.09597 * 359.97438 * 27 26 24 29 29 C 1.41026 * 118.92139 * 0.02562 * 28 27 26 30 30 N 1.32040 * 119.23861 * 0.02562 * 20 18 17 31 31 H 0.97000 * 119.99826 * 359.71926 * 1 2 3 32 32 H 1.08995 * 110.31554 * 300.88495 * 10 9 7 33 33 H 1.08998 * 110.31312 * 63.07284 * 10 9 7 34 34 H 1.09003 * 112.36644 * 64.27025 * 13 11 10 35 35 H 1.09001 * 112.36727 * 191.71525 * 13 11 10 36 36 H 1.09000 * 110.34692 * 169.93803 * 16 14 9 37 37 H 1.09001 * 110.30413 * 47.84664 * 16 14 9 38 38 H 1.08003 * 120.05777 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.93200 * 180.21593 * 22 21 20 40 40 H 0.96702 * 114.00361 * 270.00590 * 25 24 23 41 41 H 1.08002 * 118.95535 * 180.02562 * 27 26 24 42 42 H 1.07998 * 120.53963 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3865 2.1107 -1.3941 5 1 1.5078 2.6179 0.8084 6 1 3.5990 1.4105 0.5858 7 6 2.0103 -1.2022 -0.0059 8 1 3.0840 -1.2053 -0.1228 9 7 1.3336 -2.3841 0.1366 10 6 -0.1323 -2.5666 0.2027 11 6 -0.3420 -4.0976 0.4180 12 1 -1.3055 -4.3991 0.8289 13 6 0.9355 -4.4196 1.2733 14 6 1.9266 -3.7496 0.2499 15 1 2.9903 -3.7934 0.4835 16 6 1.4838 -4.4715 -1.0540 17 7 0.0323 -4.7038 -0.8941 18 6 -0.7871 -5.3351 -1.7579 19 8 -1.9677 -5.4554 -1.4978 20 6 -0.2475 -5.8824 -3.0272 21 6 -1.1125 -6.5407 -3.9111 22 6 -0.6301 -7.0460 -5.0871 23 6 0.7369 -6.8918 -5.3618 24 6 1.3228 -7.3848 -6.5471 25 8 0.5631 -8.0312 -7.4635 26 7 2.6121 -7.2140 -6.7586 27 6 3.4009 -6.5884 -5.8950 28 6 2.9304 -6.0773 -4.7257 29 6 1.5604 -6.2177 -4.4222 30 7 1.0379 -5.7428 -3.2949 31 1 -0.4850 0.8400 0.0041 32 1 -0.5459 -2.0065 1.0413 33 1 -0.5958 -2.2487 -0.7312 34 1 0.9267 -3.9135 2.2387 35 1 1.1075 -5.4911 1.3749 36 1 2.0097 -5.4205 -1.1591 37 1 1.6724 -3.8373 -1.9202 38 1 -2.1592 -6.6454 -3.6663 39 1 -1.2824 -7.5534 -5.7823 40 1 0.5103 -8.9871 -7.3271 41 1 4.4500 -6.4808 -6.1280 42 1 3.5954 -5.5729 -4.0403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032484824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = 70.619943 kcal Electronic energy + Delta-G solvation = -29344.775468 eV Core-core repulsion = 25292.811001 eV Total energy + Delta-G solvation = -4051.964466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63985 -40.17523 -38.88473 -37.77118 -37.12390 -33.87022 -33.27381 -32.15512 -31.25569 -30.16270 -29.06457 -28.56846 -25.95484 -25.16529 -24.57953 -23.43221 -22.72313 -21.28467 -19.90887 -19.58217 -18.94667 -18.14953 -17.84653 -17.31776 -16.71586 -16.09929 -15.90614 -15.77255 -15.26573 -14.85791 -14.57120 -14.19300 -14.07384 -13.83127 -13.47041 -13.27628 -13.22909 -12.96790 -12.57049 -12.19878 -12.07034 -11.92540 -11.65245 -11.31177 -11.05332 -10.90616 -10.86851 -10.81794 -10.61643 -10.35653 -10.15996 -10.05496 -9.97086 -9.65315 -9.58254 -9.50803 -8.68341 -8.66785 -8.06006 -6.92177 -5.78399 -3.11113 -0.23498 0.25818 1.47146 2.31673 3.02537 3.11059 3.27896 3.37087 3.42440 3.44804 3.77776 3.84521 4.17623 4.27507 4.37803 4.42216 4.53063 4.79185 4.97707 5.05142 5.18654 5.24551 5.31275 5.35010 5.40180 5.56915 5.60899 5.63579 5.73378 5.74966 5.97994 6.08477 6.17397 6.23971 6.31746 6.41647 6.51463 6.60540 6.75264 7.01066 7.36297 7.41853 7.46180 7.52200 7.70240 7.93713 8.09280 8.35750 9.09377 9.70834 10.40135 11.34344 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003346 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.483455 B = 8365.075785 C = 9356.629211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.174 3.826 11 C 0.095 3.905 12 H 0.117 0.883 13 C -0.149 4.149 14 C 0.134 3.866 15 H 0.107 0.893 16 C 0.102 3.898 17 N -0.578 5.578 18 C 0.572 3.428 19 O -0.544 6.544 20 C 0.155 3.845 21 C -0.130 4.130 22 C -0.035 4.035 23 C -0.167 4.167 24 C 0.363 3.637 25 O -0.474 6.474 26 N -0.504 5.504 27 C 0.108 3.892 28 C -0.140 4.140 29 C 0.164 3.836 30 N -0.434 5.434 31 H 0.254 0.746 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.405 0.595 41 H 0.167 0.833 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 -18.204 -8.236 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.007 4.007 12 H 0.134 0.866 13 C -0.189 4.189 14 C 0.026 3.974 15 H 0.125 0.875 16 C -0.023 4.023 17 N -0.309 5.309 18 C 0.357 3.643 19 O -0.422 6.422 20 C 0.000 4.000 21 C -0.151 4.151 22 C -0.063 4.063 23 C -0.172 4.172 24 C 0.169 3.831 25 O -0.282 6.282 26 N -0.223 5.223 27 C -0.035 4.035 28 C -0.160 4.160 29 C 0.036 3.964 30 N -0.146 5.146 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.264 0.736 41 H 0.184 0.816 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.327 -17.305 -8.570 19.595 hybrid contribution -0.468 0.445 0.013 0.646 sum 2.859 -16.859 -8.557 19.122 Atomic orbital electron populations 1.69927 1.04979 1.25301 1.56301 1.24826 0.95652 0.97694 1.02028 0.86132 0.78713 0.83638 0.77455 1.21748 1.21649 1.20549 1.19038 0.91102 0.82173 1.43490 0.90138 1.45243 1.01258 1.00322 1.85389 1.21934 0.85024 0.87000 1.01149 1.24490 0.98158 0.96422 0.81587 0.86564 1.24199 0.96364 0.99441 0.98890 1.23282 0.96604 0.86174 0.91371 0.87537 1.23256 0.78687 0.99330 1.00983 1.49123 1.10582 1.51868 1.19321 1.17440 0.85294 0.79255 0.82284 1.90760 1.15099 1.60350 1.76036 1.21735 0.89335 0.93715 0.95189 1.21865 1.02422 0.97228 0.93577 1.21345 0.93326 0.95636 0.95981 1.19914 0.96472 1.04479 0.96377 1.19214 0.86530 0.92446 0.84943 1.84707 1.67076 1.25389 1.50983 1.67036 1.05028 1.17378 1.32895 1.21983 0.99429 0.93120 0.89000 1.21837 0.93606 1.01257 0.99316 1.18933 0.94257 0.93552 0.89647 1.68346 1.12680 1.16399 1.17191 0.93607 0.92250 0.93645 0.89565 0.91634 0.92006 0.90422 0.82594 0.82908 0.73624 0.81626 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.61 55.49 0.59 -26.09 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.09 10.36 -15.06 -0.16 -6.25 16 8 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 9 N -0.60 -14.28 3.02 -156.44 -0.47 -14.76 16 10 C 0.17 4.14 4.78 -1.67 -0.01 4.13 16 11 C 0.10 1.82 5.24 -62.55 -0.33 1.49 16 12 H 0.12 2.11 8.05 -51.93 -0.42 1.69 16 13 C -0.15 -2.49 6.83 -22.10 -0.15 -2.64 16 14 C 0.13 2.49 5.51 -62.65 -0.35 2.14 16 15 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.10 1.81 4.77 -1.98 -0.01 1.80 16 17 N -0.58 -10.82 2.95 -158.02 -0.47 -11.29 16 18 C 0.57 10.58 7.89 -12.09 -0.10 10.49 16 19 O -0.54 -11.06 16.62 5.38 0.09 -10.97 16 20 C 0.15 2.43 6.73 -82.90 -0.56 1.87 16 21 C -0.13 -1.64 9.54 -39.41 -0.38 -2.02 16 22 C -0.04 -0.36 9.68 -39.34 -0.38 -0.74 16 23 C -0.17 -1.95 5.76 -106.61 -0.61 -2.57 16 24 C 0.36 3.92 7.82 -16.49 -0.13 3.80 16 25 O -0.47 -3.92 12.88 -18.06 -0.23 -4.15 16 26 N -0.50 -5.76 10.33 -13.27 -0.14 -5.89 16 27 C 0.11 1.07 11.05 -18.00 -0.20 0.87 16 28 C -0.14 -1.53 10.07 -39.33 -0.40 -1.93 16 29 C 0.16 2.18 6.63 -84.87 -0.56 1.61 16 30 N -0.43 -6.59 7.04 -7.51 -0.05 -6.65 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.06 1.55 7.39 -51.93 -0.38 1.16 16 33 H 0.05 1.25 7.76 -51.93 -0.40 0.85 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.96 7.48 -51.93 -0.39 0.57 16 37 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 38 H 0.16 1.80 7.60 -52.48 -0.40 1.40 16 39 H 0.15 1.06 7.72 -52.49 -0.41 0.65 16 40 H 0.40 1.17 9.06 45.56 0.41 1.58 16 41 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -34.23 351.93 -8.85 -43.08 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.04 Total: 2.96 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -4.40 Total: 11.81 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.54 Total: -64.67 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.14 Total: -15.12 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.23 -8.85 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032484824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.703 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds