Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47358 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00689 * 3 2 1 6 6 H 1.48505 * 109.46671 * 150.00078 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00332 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05761 * 359.63413 * 13 11 10 15 15 C 1.53757 * 87.89162 * 152.95826 * 14 13 11 16 16 O 1.42900 * 114.57342 * 272.66594 * 15 14 13 17 17 C 1.52999 * 114.08677 * 139.77678 * 15 14 13 18 18 N 1.46503 * 109.46711 * 86.56746 * 17 15 14 19 19 C 1.34784 * 119.99386 * 180.02562 * 18 17 15 20 20 O 1.21609 * 119.99949 * 359.97438 * 19 18 17 21 21 C 1.47100 * 119.99537 * 179.97438 * 19 18 17 22 22 C 1.33000 * 119.99787 * 179.97438 * 21 19 18 23 23 C 1.51396 * 136.31394 * 359.63016 * 22 21 19 24 24 C 1.53384 * 87.51415 * 206.05471 * 23 22 21 25 25 C 1.51406 * 136.31282 * 179.97438 * 22 21 19 26 26 C 1.47060 * 136.05953 * 179.97438 * 13 11 10 27 27 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 30 30 H 1.09000 * 113.47067 * 267.69524 * 14 13 11 31 31 H 1.09009 * 113.47132 * 38.13010 * 14 13 11 32 32 H 0.96697 * 113.99686 * 273.66466 * 16 15 14 33 33 H 1.08998 * 109.47033 * 206.56304 * 17 15 14 34 34 H 1.08993 * 109.47299 * 326.56323 * 17 15 14 35 35 H 0.96996 * 120.00395 * 359.97438 * 18 17 15 36 36 H 1.08002 * 120.00337 * 359.97438 * 21 19 18 37 37 H 1.08995 * 113.56493 * 320.63701 * 23 22 21 38 38 H 1.09001 * 113.56410 * 91.37526 * 23 22 21 39 39 H 1.09008 * 113.96499 * 220.28670 * 24 23 22 40 40 H 1.08999 * 113.59658 * 88.79992 * 24 23 22 41 41 H 1.08996 * 113.56139 * 268.62435 * 25 22 21 42 42 H 1.08996 * 113.56143 * 39.36436 * 25 22 21 43 43 H 1.09004 * 113.46777 * 321.86864 * 26 13 11 44 44 H 1.08997 * 113.47079 * 92.24669 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3439 -2.2964 -0.0070 13 7 6.0457 -4.4948 -0.0030 14 6 5.4613 -5.8443 0.0031 15 6 6.7354 -6.3376 -0.7022 16 8 6.7015 -6.2397 -2.1274 17 6 7.2424 -7.6912 -0.2008 18 7 6.5697 -8.7666 -0.9338 19 6 6.8597 -10.0537 -0.6583 20 8 7.6800 -10.3223 0.1983 21 6 6.1838 -11.1335 -1.3939 22 6 6.4703 -12.4036 -1.1225 23 6 7.3958 -13.1392 -0.1768 24 6 7.3881 -14.3004 -1.1789 25 6 6.0209 -13.7590 -1.6259 26 6 7.3727 -5.1286 -0.0037 27 1 -0.4850 0.8400 0.0004 28 1 3.6433 -3.4311 -0.8926 29 1 3.6440 -3.4323 0.8874 30 1 5.3317 -6.2567 1.0037 31 1 4.5633 -5.9314 -0.6088 32 1 6.2995 -7.0028 -2.5646 33 1 8.3182 -7.7589 -0.3627 34 1 7.0284 -7.7878 0.8636 35 1 5.9151 -8.5523 -1.6168 36 1 5.4550 -10.8950 -2.1544 37 1 8.3720 -12.6668 -0.0672 38 1 6.9350 -13.3860 0.7797 39 1 7.3411 -15.2856 -0.7146 40 1 8.1631 -14.2238 -1.9415 41 1 5.1833 -14.1757 -1.0666 42 1 5.8695 -13.7949 -2.7046 43 1 8.1031 -4.6059 -0.6214 44 1 7.7479 -5.3512 0.9951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042484206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -29.714081 kcal Electronic energy + Delta-G solvation = -25843.536316 eV Core-core repulsion = 21890.372240 eV Total energy + Delta-G solvation = -3953.164076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10002 -40.10674 -38.80767 -38.09307 -35.79188 -34.65352 -32.45377 -31.68662 -30.71449 -28.89236 -26.47144 -26.29706 -26.11045 -25.55967 -23.59815 -21.29738 -21.20468 -19.53090 -19.02482 -17.81046 -17.64122 -17.08472 -16.83709 -16.23748 -15.99630 -15.72994 -15.69215 -15.45412 -15.03851 -14.87415 -14.42965 -14.39749 -14.01918 -13.74013 -13.59148 -13.17830 -12.97151 -12.84559 -12.70680 -12.50823 -12.23959 -12.19640 -12.04587 -11.52931 -11.35697 -11.23965 -11.05239 -11.01574 -10.63575 -10.48545 -10.15944 -9.86762 -9.80127 -9.56018 -9.47033 -9.01669 -8.76302 -8.52079 -6.93939 -6.30327 -4.02393 0.87612 2.47746 2.60315 2.86903 2.90618 3.07659 3.32730 3.36619 3.50095 3.55954 3.70428 3.85259 3.97489 4.16980 4.22368 4.31670 4.42737 4.57962 4.63088 4.71137 4.98953 4.99509 5.07207 5.08733 5.10437 5.13392 5.16938 5.18139 5.24041 5.31425 5.40845 5.44959 5.48037 5.67949 5.73363 5.74722 5.78153 5.86921 5.98574 6.09946 6.94494 7.08331 7.68943 7.78386 7.92639 8.38042 8.39758 9.15779 10.78809 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.001769 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.506934 B =15826.882039 C =16608.086707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.114 4.114 11 C 0.565 3.435 12 O -0.514 6.514 13 N -0.644 5.644 14 C 0.076 3.924 15 C 0.079 3.921 16 O -0.518 6.518 17 C 0.109 3.891 18 N -0.730 5.730 19 C 0.555 3.445 20 O -0.537 6.537 21 C -0.205 4.205 22 C -0.056 4.056 23 C -0.108 4.108 24 C -0.144 4.144 25 C -0.110 4.110 26 C 0.122 3.878 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.375 0.625 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.398 0.602 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.438 -30.071 -3.252 33.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.265 4.265 11 C 0.354 3.646 12 O -0.387 6.387 13 N -0.382 5.382 14 C -0.048 4.048 15 C 0.036 3.964 16 O -0.323 6.323 17 C -0.016 4.016 18 N -0.384 5.384 19 C 0.344 3.656 20 O -0.416 6.416 21 C -0.226 4.226 22 C -0.057 4.057 23 C -0.144 4.144 24 C -0.181 4.181 25 C -0.147 4.147 26 C -0.002 4.002 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.224 0.776 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.233 0.767 36 H 0.152 0.848 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.198 -27.899 -2.511 31.869 hybrid contribution -1.604 -0.678 -0.542 1.824 sum 13.594 -28.577 -3.054 31.793 Atomic orbital electron populations 1.69937 1.05896 1.27790 1.48009 1.24704 0.94455 0.98958 0.93124 0.86734 0.81895 0.83247 0.79985 1.19158 1.19884 1.15931 1.22300 0.88169 0.97557 1.58901 0.89392 1.84809 1.09390 0.99796 1.97422 1.23202 0.93279 1.04305 1.05688 1.19856 0.90427 0.79594 0.74690 1.90718 1.58935 1.40588 1.48491 1.49321 1.08984 1.04205 1.75664 1.23802 0.98117 0.81702 1.01174 1.22788 0.97257 0.93647 0.82695 1.86689 1.83635 1.46346 1.15676 1.21800 0.98460 0.83955 0.97354 1.45772 1.45004 1.05781 1.41795 1.18407 0.81959 0.82428 0.82764 1.90799 1.34184 1.83514 1.33067 1.21525 1.04850 0.91080 1.05153 1.23539 0.93787 0.93284 0.95132 1.22253 1.00214 0.94661 0.97297 1.22748 0.97094 0.98653 0.99588 1.22384 0.98431 0.91908 1.01946 1.22887 0.88565 0.88778 0.99927 0.91919 0.88564 0.88594 0.88584 0.89494 0.77609 0.89736 0.89424 0.76658 0.84775 0.89455 0.88259 0.90253 0.89667 0.87906 0.90214 0.89122 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 10 C -0.11 -2.30 5.98 36.01 0.22 -2.09 16 11 C 0.56 10.77 8.10 -10.98 -0.09 10.68 16 12 O -0.51 -11.79 16.64 5.56 0.09 -11.70 16 13 N -0.64 -8.94 3.69 -185.07 -0.68 -9.63 16 14 C 0.08 0.69 7.86 -8.38 -0.07 0.62 16 15 C 0.08 0.62 1.74 -89.98 -0.16 0.46 16 16 O -0.52 -4.51 13.56 -35.23 -0.48 -4.99 16 17 C 0.11 0.70 5.42 -4.04 -0.02 0.68 16 18 N -0.73 -4.06 5.34 -61.49 -0.33 -4.39 16 19 C 0.55 4.49 7.76 -12.66 -0.10 4.39 16 20 O -0.54 -6.28 15.15 5.27 0.08 -6.20 16 21 C -0.21 -1.25 10.03 -37.81 -0.38 -1.62 16 22 C -0.06 -0.35 6.93 -100.49 -0.70 -1.04 16 23 C -0.11 -0.68 6.99 -27.56 -0.19 -0.87 16 24 C -0.14 -0.60 8.17 -26.18 -0.21 -0.82 16 25 C -0.11 -0.43 7.96 -27.39 -0.22 -0.65 16 26 C 0.12 1.28 8.03 -8.53 -0.07 1.21 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 29 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 30 H 0.10 0.69 7.93 -51.93 -0.41 0.28 16 31 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.38 1.63 7.21 45.56 0.33 1.96 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.57 7.89 -51.93 -0.41 0.16 16 35 H 0.40 1.14 6.93 -40.82 -0.28 0.86 16 36 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.09 0.70 7.49 -51.93 -0.39 0.31 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -38.69 387.46 -8.99 -47.68 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.81 Total: -1.29 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.77 Total: -1.13 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.24 Total: -39.79 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.31 Total: -22.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.69 -8.99 -47.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042484206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.967 kcal (2) G-P(sol) polarization free energy of solvation -38.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds