Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47358 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00689 * 3 2 1 6 6 H 1.48505 * 109.46671 * 150.00078 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00332 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05761 * 359.63413 * 13 11 10 15 15 C 1.53757 * 87.89162 * 152.95826 * 14 13 11 16 16 O 1.42900 * 114.57342 * 272.66594 * 15 14 13 17 17 C 1.52999 * 114.08677 * 139.77678 * 15 14 13 18 18 N 1.46503 * 109.46711 * 86.56746 * 17 15 14 19 19 C 1.34784 * 119.99386 * 180.02562 * 18 17 15 20 20 O 1.21609 * 119.99949 * 359.97438 * 19 18 17 21 21 C 1.47100 * 119.99537 * 179.97438 * 19 18 17 22 22 C 1.33000 * 119.99787 * 179.97438 * 21 19 18 23 23 C 1.51396 * 136.31394 * 359.63016 * 22 21 19 24 24 C 1.53384 * 87.51415 * 206.05471 * 23 22 21 25 25 C 1.51406 * 136.31282 * 179.97438 * 22 21 19 26 26 C 1.47060 * 136.05953 * 179.97438 * 13 11 10 27 27 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 30 30 H 1.09000 * 113.47067 * 267.69524 * 14 13 11 31 31 H 1.09009 * 113.47132 * 38.13010 * 14 13 11 32 32 H 0.96697 * 113.99686 * 273.66466 * 16 15 14 33 33 H 1.08998 * 109.47033 * 206.56304 * 17 15 14 34 34 H 1.08993 * 109.47299 * 326.56323 * 17 15 14 35 35 H 0.96996 * 120.00395 * 359.97438 * 18 17 15 36 36 H 1.08002 * 120.00337 * 359.97438 * 21 19 18 37 37 H 1.08995 * 113.56493 * 320.63701 * 23 22 21 38 38 H 1.09001 * 113.56410 * 91.37526 * 23 22 21 39 39 H 1.09008 * 113.96499 * 220.28670 * 24 23 22 40 40 H 1.08999 * 113.59658 * 88.79992 * 24 23 22 41 41 H 1.08996 * 113.56139 * 268.62435 * 25 22 21 42 42 H 1.08996 * 113.56143 * 39.36436 * 25 22 21 43 43 H 1.09004 * 113.46777 * 321.86864 * 26 13 11 44 44 H 1.08997 * 113.47079 * 92.24669 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3439 -2.2964 -0.0070 13 7 6.0457 -4.4948 -0.0030 14 6 5.4613 -5.8443 0.0031 15 6 6.7354 -6.3376 -0.7022 16 8 6.7015 -6.2397 -2.1274 17 6 7.2424 -7.6912 -0.2008 18 7 6.5697 -8.7666 -0.9338 19 6 6.8597 -10.0537 -0.6583 20 8 7.6800 -10.3223 0.1983 21 6 6.1838 -11.1335 -1.3939 22 6 6.4703 -12.4036 -1.1225 23 6 7.3958 -13.1392 -0.1768 24 6 7.3881 -14.3004 -1.1789 25 6 6.0209 -13.7590 -1.6259 26 6 7.3727 -5.1286 -0.0037 27 1 -0.4850 0.8400 0.0004 28 1 3.6433 -3.4311 -0.8926 29 1 3.6440 -3.4323 0.8874 30 1 5.3317 -6.2567 1.0037 31 1 4.5633 -5.9314 -0.6088 32 1 6.2995 -7.0028 -2.5646 33 1 8.3182 -7.7589 -0.3627 34 1 7.0284 -7.7878 0.8636 35 1 5.9151 -8.5523 -1.6168 36 1 5.4550 -10.8950 -2.1544 37 1 8.3720 -12.6668 -0.0672 38 1 6.9350 -13.3860 0.7797 39 1 7.3411 -15.2856 -0.7146 40 1 8.1631 -14.2238 -1.9415 41 1 5.1833 -14.1757 -1.0666 42 1 5.8695 -13.7949 -2.7046 43 1 8.1031 -4.6059 -0.6214 44 1 7.7479 -5.3512 0.9951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042484206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -60.131953 kcal Electronic energy + Delta-G solvation = -25844.855334 eV Core-core repulsion = 21890.372240 eV Total energy + Delta-G solvation = -3954.483094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96456 -40.75819 -39.59424 -39.05228 -36.66912 -35.27972 -34.69440 -32.39769 -31.81591 -29.94306 -27.90961 -27.27379 -26.95537 -26.63236 -24.07626 -22.05682 -21.79063 -20.65798 -19.84455 -19.45624 -18.24385 -18.16538 -17.62047 -17.27602 -17.06927 -16.84656 -16.56068 -16.42229 -16.17515 -15.76957 -15.61136 -15.23867 -15.01639 -14.91825 -14.84713 -14.42535 -14.13778 -13.63334 -13.52241 -13.35878 -13.31490 -13.03509 -13.00029 -12.90842 -12.66232 -12.62597 -12.09356 -11.89737 -11.88148 -11.50443 -11.32553 -11.19123 -10.92206 -10.71629 -10.58008 -10.33950 -9.95459 -9.88735 -9.04274 -8.53587 -6.25480 0.39532 0.90139 1.30048 1.39696 1.45962 1.49701 1.86321 2.07591 2.23366 2.32017 2.62399 2.73093 2.84587 3.02365 3.38555 3.44875 3.56306 3.61806 3.85304 3.96377 4.13525 4.19938 4.28140 4.30881 4.36497 4.45679 4.48556 4.62291 4.63117 4.64846 4.76745 4.77900 4.80430 4.88703 4.96342 5.05962 5.26834 5.31160 5.37076 5.68700 5.68977 6.08820 6.46428 6.50270 6.63168 6.91376 6.97771 7.24254 8.58649 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.001769 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.506934 B =15826.882039 C =16608.086707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.239 1.239 7 C -0.529 4.529 8 H 0.064 0.936 9 S -0.176 6.176 10 C -0.098 4.098 11 C 0.563 3.437 12 O -0.566 6.566 13 N -0.645 5.645 14 C 0.073 3.927 15 C 0.106 3.894 16 O -0.539 6.539 17 C 0.119 3.881 18 N -0.716 5.716 19 C 0.549 3.451 20 O -0.581 6.581 21 C -0.210 4.210 22 C -0.070 4.070 23 C -0.118 4.118 24 C -0.138 4.138 25 C -0.099 4.099 26 C 0.111 3.889 27 H 0.278 0.722 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.395 0.605 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.164 0.836 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.563 -31.979 -3.791 34.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.157 4.157 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.163 1.163 7 C -0.677 4.677 8 H 0.082 0.918 9 S 0.051 5.949 10 C -0.249 4.249 11 C 0.352 3.648 12 O -0.444 6.444 13 N -0.381 5.381 14 C -0.050 4.050 15 C 0.063 3.937 16 O -0.347 6.347 17 C -0.006 4.006 18 N -0.370 5.370 19 C 0.340 3.660 20 O -0.462 6.462 21 C -0.231 4.231 22 C -0.072 4.072 23 C -0.155 4.155 24 C -0.175 4.175 25 C -0.136 4.136 26 C -0.012 4.012 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.247 0.753 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.252 0.748 36 H 0.182 0.818 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.293 -29.875 -3.083 33.703 hybrid contribution -1.583 -0.306 -0.389 1.659 sum 13.709 -30.181 -3.472 33.330 Atomic orbital electron populations 1.70007 1.07187 1.29068 1.48921 1.25525 0.95273 1.02131 0.92802 0.85892 0.80656 0.79729 0.80254 1.18683 1.18073 1.16288 1.22422 0.89934 0.96799 1.58550 0.91823 1.84757 1.06824 1.05776 1.97577 1.23131 0.95051 0.99674 1.07036 1.19501 0.89378 0.80921 0.75032 1.90689 1.59598 1.42691 1.51463 1.49276 1.11637 1.04116 1.73071 1.24210 0.98957 0.78589 1.03213 1.22414 0.95769 0.93168 0.82353 1.86660 1.83980 1.48008 1.16061 1.21640 0.98170 0.83076 0.97692 1.45626 1.44779 1.04906 1.41683 1.18816 0.81483 0.83361 0.82355 1.90786 1.36182 1.84192 1.35079 1.21726 1.05309 0.90392 1.05657 1.23895 0.93781 0.94372 0.95147 1.22313 0.99135 0.95963 0.98116 1.22744 0.97506 0.98453 0.98834 1.22388 0.98377 0.89991 1.02825 1.23282 0.86910 0.89153 1.01827 0.91285 0.87320 0.87028 0.85818 0.88439 0.75350 0.90223 0.88761 0.74841 0.81847 0.91984 0.88265 0.89000 0.89741 0.86662 0.88925 0.90736 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.50 13.97 21.65 0.30 -55.20 16 2 C 0.05 2.85 5.50 84.86 0.47 3.32 16 3 Si 0.91 45.29 27.74 68.60 1.90 47.20 16 4 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 7 C -0.53 -31.05 10.04 67.96 0.68 -30.37 16 8 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 9 S -0.18 -9.13 18.55 -56.49 -1.05 -10.17 16 10 C -0.10 -3.88 5.98 71.24 0.43 -3.45 16 11 C 0.56 21.04 8.10 87.66 0.71 21.75 16 12 O -0.57 -26.17 16.64 -3.01 -0.05 -26.22 16 13 N -0.65 -16.73 3.69 -858.30 -3.16 -19.90 16 14 C 0.07 1.08 7.86 83.26 0.65 1.73 16 15 C 0.11 1.36 1.74 -10.38 -0.02 1.35 16 16 O -0.54 -7.98 13.56 -148.98 -2.02 -10.01 16 17 C 0.12 1.22 5.42 86.38 0.47 1.69 16 18 N -0.72 -6.07 5.34 -466.71 -2.49 -8.56 16 19 C 0.55 7.99 7.76 86.57 0.67 8.66 16 20 O -0.58 -13.33 15.15 -4.06 -0.06 -13.39 16 21 C -0.21 -2.11 10.03 23.43 0.23 -1.88 16 22 C -0.07 -0.76 6.93 -17.17 -0.12 -0.88 16 23 C -0.12 -1.46 6.99 30.06 0.21 -1.25 16 24 C -0.14 -0.97 8.17 30.95 0.25 -0.72 16 25 C -0.10 -0.55 7.96 30.16 0.24 -0.31 16 26 C 0.11 2.11 8.03 83.17 0.67 2.78 16 27 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.12 1.27 7.93 -2.39 -0.02 1.25 16 31 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.39 2.17 7.21 -74.06 -0.53 1.64 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.93 7.89 -2.39 -0.02 0.91 16 35 H 0.41 0.95 6.93 -92.71 -0.64 0.31 16 36 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.06 1.06 7.49 -2.39 -0.02 1.05 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.13 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -86.21 387.46 -1.26 -87.47 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -0.18 Total: 6.36 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.55 Total: 2.42 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -5.35 Total: -83.66 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.13 Total: -49.62 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.05 Total: -10.17 kcal Total: -86.21 -1.26 -87.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042484206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.343 kcal (2) G-P(sol) polarization free energy of solvation -86.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds