Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47015 * 176.88513 * 3 2 1 5 5 N 1.46501 * 109.47258 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99577 * 263.58277 * 5 4 3 7 7 C 1.50696 * 109.47070 * 270.00227 * 6 5 4 8 8 H 1.08001 * 119.99801 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00063 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00114 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99948 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47218 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47094 * 119.99979 * 11 9 7 14 14 H 1.48508 * 109.47066 * 239.99776 * 11 9 7 15 15 C 1.34773 * 120.00167 * 83.58240 * 5 4 3 16 16 O 1.21667 * 119.99807 * 184.08222 * 15 5 4 17 17 C 1.46715 * 120.00045 * 4.08078 * 15 5 4 18 18 N 1.29760 * 126.54794 * 353.85250 * 17 15 5 19 19 N 1.39165 * 112.70022 * 180.02562 * 18 17 15 20 20 C 1.40005 * 124.34397 * 180.02562 * 19 18 17 21 21 C 1.38884 * 120.06593 * 179.69945 * 20 19 18 22 22 C 1.38102 * 119.92430 * 179.74062 * 21 20 19 23 23 C 1.38291 * 120.07408 * 0.51185 * 22 21 20 24 24 C 1.38284 * 120.14172 * 359.76396 * 23 22 21 25 25 C 1.38111 * 120.07164 * 359.97438 * 24 23 22 26 26 C 1.35193 * 111.33975 * 0.09025 * 19 18 17 27 27 O 1.21249 * 127.46617 * 179.97438 * 26 19 18 28 28 C 1.51447 * 126.54719 * 173.89688 * 17 15 5 29 29 H 1.09006 * 109.47426 * 56.88766 * 3 2 1 30 30 H 1.09002 * 109.47759 * 296.88436 * 3 2 1 31 31 H 1.08992 * 109.46992 * 59.99831 * 4 3 2 32 32 H 1.08999 * 109.46722 * 299.99980 * 4 3 2 33 33 H 1.09001 * 109.47105 * 29.99931 * 6 5 4 34 34 H 1.08998 * 109.46787 * 149.99825 * 6 5 4 35 35 H 0.97001 * 120.00164 * 180.02562 * 10 9 7 36 36 H 1.08008 * 120.03858 * 359.97418 * 21 20 19 37 37 H 1.08002 * 119.96670 * 180.25678 * 22 21 20 38 38 H 1.07998 * 119.92726 * 179.74862 * 23 22 21 39 39 H 1.07996 * 119.96987 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.03924 * 180.02562 * 25 24 23 41 41 H 1.09000 * 110.57909 * 298.51830 * 28 17 15 42 42 H 1.09008 * 110.57942 * 61.26168 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4413 -0.0784 5 7 4.5823 1.4420 -0.0790 6 6 5.3151 1.6523 1.1720 7 6 5.5656 3.1256 1.3659 8 1 5.2144 3.8344 0.6305 9 6 6.2440 3.5686 2.4815 10 7 6.6721 2.7055 3.3766 11 14 6.5551 5.3948 2.7214 12 1 5.9773 6.1495 1.5805 13 1 5.9183 5.8435 3.9856 14 1 8.0177 5.6432 2.7886 15 6 5.2558 1.2492 -1.2304 16 8 6.4702 1.1756 -1.2197 17 6 4.5246 1.1281 -2.4965 18 7 3.2363 1.0756 -2.6429 19 7 2.8515 0.9598 -3.9753 20 6 1.5228 0.8842 -4.4099 21 6 1.2391 0.7762 -5.7652 22 6 -0.0725 0.6964 -6.1903 23 6 -1.1031 0.7346 -5.2690 24 6 -0.8242 0.8478 -3.9193 25 6 0.4855 0.9226 -3.4872 26 6 3.9250 0.9283 -4.7964 27 8 3.9264 0.8335 -6.0052 28 6 5.1292 1.0395 -3.8822 29 1 2.9716 -0.5606 -0.8608 30 1 2.9716 -0.4639 0.9166 31 1 2.7537 2.0025 0.7823 32 1 2.7537 1.9058 -0.9950 33 1 4.7265 1.2709 2.0064 34 1 6.2678 1.1244 1.1281 35 1 7.1491 3.0172 4.1617 36 1 2.0434 0.7508 -6.4856 37 1 -0.2937 0.6082 -7.2437 38 1 -2.1280 0.6761 -5.6044 39 1 -1.6312 0.8770 -3.2022 40 1 0.7027 1.0107 -2.4330 41 1 5.7007 1.9395 -4.1092 42 1 5.7597 0.1545 -3.9693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147883878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = 50.770176 kcal Electronic energy + Delta-G solvation = -29079.940863 eV Core-core repulsion = 25027.115646 eV Total energy + Delta-G solvation = -4052.825217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95753 -40.90065 -39.77774 -38.79666 -38.04829 -36.82434 -35.04836 -34.57006 -32.27984 -31.98423 -30.83668 -30.37504 -29.18564 -26.25674 -25.38783 -24.43475 -24.06548 -22.66546 -21.77311 -20.06047 -19.16240 -18.88801 -18.40173 -18.13590 -17.78942 -17.35830 -17.16331 -16.47075 -16.28794 -16.03217 -15.98403 -15.69234 -15.41157 -15.06971 -14.82178 -14.59204 -14.46977 -14.37834 -14.36171 -13.93292 -13.71693 -13.62684 -13.22718 -13.20274 -13.05637 -12.95690 -12.76029 -12.53460 -12.33066 -12.17723 -12.14497 -11.81933 -11.63636 -11.33315 -11.12782 -10.84722 -10.55996 -10.02222 -9.64810 -9.16048 -8.16556 -6.28007 -0.43002 0.06606 0.33013 0.81500 1.20379 1.43592 1.46937 1.55570 1.64146 1.80544 1.83473 2.09851 2.42978 2.49642 2.78874 2.88504 3.16771 3.22175 3.39312 3.78104 3.91018 3.97662 4.08096 4.11141 4.15157 4.22095 4.33993 4.41794 4.48277 4.53360 4.62752 4.74916 4.99100 5.01824 5.08110 5.20529 5.23812 5.34108 5.42170 5.51985 5.52970 5.81960 5.92595 6.08738 6.11004 6.40285 6.46883 6.59405 6.79167 7.06545 7.42376 8.90660 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003391 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.586244 B = 8255.986460 C = 9277.539847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.238 3.762 3 C -0.034 4.034 4 C 0.108 3.892 5 N -0.569 5.569 6 C 0.257 3.743 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.018 3.982 10 N -0.921 5.921 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.284 1.284 15 C 0.584 3.416 16 O -0.545 6.545 17 C 0.085 3.915 18 N -0.188 5.188 19 N -0.414 5.414 20 C 0.143 3.857 21 C -0.163 4.163 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.101 4.101 25 C -0.142 4.142 26 C 0.503 3.497 27 O -0.497 6.497 28 C -0.142 4.142 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.022 0.978 35 H 0.266 0.734 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.124 0.876 41 H 0.166 0.834 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 -5.461 -14.962 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.079 4.079 3 C -0.075 4.075 4 C -0.017 4.017 5 N -0.299 5.299 6 C 0.137 3.863 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.182 4.182 10 N -0.561 5.561 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.210 1.210 15 C 0.368 3.632 16 O -0.420 6.420 17 C -0.108 4.108 18 N -0.001 5.001 19 N -0.225 5.225 20 C 0.052 3.948 21 C -0.183 4.183 22 C -0.111 4.111 23 C -0.148 4.148 24 C -0.119 4.119 25 C -0.162 4.162 26 C 0.293 3.707 27 O -0.370 6.370 28 C -0.183 4.183 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.142 0.858 41 H 0.183 0.817 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.409 -5.565 -15.047 20.909 hybrid contribution 1.547 0.958 0.226 1.833 sum -11.863 -4.606 -14.821 19.534 Atomic orbital electron populations 1.81207 1.13681 1.09321 1.10516 1.28975 0.94914 0.92343 0.91705 1.19694 0.81039 0.99564 1.07201 1.21807 0.78730 0.95591 1.05589 1.48044 1.07138 1.66529 1.08163 1.19085 0.92076 0.95537 0.79582 1.21733 1.36600 0.93369 1.06434 0.92517 1.25626 0.95168 1.01777 0.95662 1.70007 1.38848 1.35581 1.11658 0.85555 0.77730 0.80502 0.78151 1.19312 1.20245 1.21006 1.16761 0.86087 0.78585 0.81732 1.90877 1.13697 1.51642 1.85806 1.25049 0.91163 0.97846 0.96728 1.75965 1.15137 1.11479 0.97524 1.47466 1.06083 1.65410 1.03526 1.17881 0.80454 1.02652 0.93847 1.21545 0.99675 1.03893 0.93221 1.21350 0.90771 0.97517 1.01434 1.21558 1.00819 0.99985 0.92478 1.21288 0.95547 0.98007 0.97066 1.20966 0.92320 1.03643 0.99278 1.21737 0.85942 0.75107 0.87916 1.90683 1.85585 1.48505 1.12221 1.21978 0.97737 1.10823 0.87810 0.86809 0.85138 0.88523 0.87911 0.93764 0.95967 0.92481 0.84010 0.82660 0.82742 0.84270 0.85770 0.81691 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.84 18.50 20.00 0.37 -12.47 16 2 C 0.24 5.54 14.44 89.44 1.29 6.83 16 3 C -0.03 -0.69 5.55 28.79 0.16 -0.53 16 4 C 0.11 2.79 4.94 86.38 0.43 3.22 16 5 N -0.57 -19.18 2.47 -830.86 -2.05 -21.24 16 6 C 0.26 11.33 5.16 85.63 0.44 11.77 16 7 C -0.54 -27.20 9.39 25.60 0.24 -26.96 16 8 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.02 0.91 5.46 84.66 0.46 1.37 16 10 N -0.92 -50.32 13.29 21.45 0.28 -50.04 16 11 Si 0.95 41.41 29.54 68.60 2.03 43.44 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.58 19.23 7.59 86.46 0.66 19.89 16 16 O -0.55 -22.05 16.54 -4.24 -0.07 -22.12 16 17 C 0.08 2.11 6.94 45.32 0.31 2.43 16 18 N -0.19 -4.54 6.60 -42.78 -0.28 -4.82 16 19 N -0.41 -10.33 3.73 -302.00 -1.13 -11.45 16 20 C 0.14 3.57 6.66 38.14 0.25 3.83 16 21 C -0.16 -3.73 9.34 22.39 0.21 -3.52 16 22 C -0.09 -1.60 10.04 22.25 0.22 -1.38 16 23 C -0.13 -2.09 10.04 22.29 0.22 -1.87 16 24 C -0.10 -1.97 10.04 22.25 0.22 -1.75 16 25 C -0.14 -3.36 9.61 22.39 0.22 -3.14 16 26 C 0.50 12.24 8.28 87.88 0.73 12.97 16 27 O -0.50 -13.89 15.09 -2.93 -0.04 -13.93 16 28 C -0.14 -2.88 6.76 29.63 0.20 -2.68 16 29 H 0.11 2.14 7.08 -2.38 -0.02 2.12 16 30 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 2.58 8.02 -2.39 -0.02 2.56 16 32 H 0.10 2.58 5.36 -2.39 -0.01 2.57 16 33 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 34 H 0.02 1.12 7.37 -2.39 -0.02 1.11 16 35 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.14 3.51 5.34 -2.91 -0.02 3.50 16 37 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.12 3.07 6.55 -2.91 -0.02 3.05 16 41 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.17 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -65.63 369.82 6.45 -59.18 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.08 Total: 12.98 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 6.27 Total: 20.47 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -2.81 Total: -100.02 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.11 Total: -36.05 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -65.63 6.45 -59.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147883878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.946 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds