Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48498 * 109.47041 * 240.00055 * 3 2 1 5 5 H 1.48505 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47211 * 119.99834 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99801 * 170.00134 * 10 9 7 12 12 C 1.53235 * 109.34079 * 187.25100 * 11 10 9 13 13 N 1.47081 * 108.52054 * 306.16959 * 12 11 10 14 14 C 1.34774 * 120.88114 * 231.16282 * 13 12 11 15 15 O 1.21278 * 119.99884 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99692 * 0.02562 * 14 13 12 17 17 N 1.46503 * 109.46817 * 180.02562 * 16 14 13 18 18 C 1.36340 * 119.85422 * 269.72269 * 17 16 14 19 19 C 1.35645 * 119.22321 * 179.77297 * 18 17 16 20 20 F 1.35096 * 120.52073 * 180.24818 * 19 18 17 21 21 C 1.40890 * 118.96266 * 0.51882 * 19 18 17 22 22 O 1.35191 * 120.16150 * 179.70684 * 21 19 18 23 23 N 1.32405 * 119.67598 * 359.72763 * 21 19 18 24 24 C 1.33252 * 120.76513 * 359.97438 * 23 21 19 25 25 O 1.21994 * 119.45815 * 180.02562 * 24 23 21 26 26 C 1.47082 * 118.23500 * 51.18575 * 13 12 11 27 27 C 1.46896 * 110.99912 * 294.29778 * 10 9 7 28 28 H 0.97003 * 119.99498 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46926 * 59.99689 * 9 7 2 30 30 H 1.09004 * 109.47047 * 299.99905 * 9 7 2 31 31 H 1.08997 * 109.48796 * 307.21122 * 11 10 9 32 32 H 1.08997 * 109.49279 * 67.28994 * 11 10 9 33 33 H 1.09002 * 109.62473 * 65.87852 * 12 11 10 34 34 H 1.09000 * 109.62576 * 186.45954 * 12 11 10 35 35 H 1.09000 * 109.47359 * 299.99606 * 16 14 13 36 36 H 1.09000 * 109.47254 * 60.00386 * 16 14 13 37 37 H 1.08004 * 120.38992 * 0.02562 * 18 17 16 38 38 H 0.96692 * 114.00363 * 180.02562 * 22 21 19 39 39 H 1.09001 * 109.62379 * 189.10499 * 26 13 12 40 40 H 1.08998 * 109.62760 * 68.52569 * 26 13 12 41 41 H 1.09001 * 109.49756 * 292.70738 * 27 10 9 42 42 H 1.08998 * 109.49494 * 52.76550 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2399 12 6 2.5630 -6.0031 0.4140 13 7 3.4617 -5.9867 -0.7502 14 6 3.7129 -7.1132 -1.4462 15 8 4.4569 -7.0815 -2.4033 16 6 3.0690 -8.4122 -1.0349 17 7 3.4987 -9.4790 -1.9425 18 6 2.7757 -9.7454 -3.0672 19 6 3.1878 -10.7328 -3.9010 20 9 2.4941 -11.0156 -5.0252 21 6 4.3474 -11.4628 -3.5733 22 8 4.7765 -12.4560 -4.3839 23 7 5.0146 -11.1716 -2.4673 24 6 4.6025 -10.1951 -1.6598 25 8 5.2357 -9.9466 -0.6471 26 6 4.0795 -4.7084 -1.1344 27 6 2.9774 -3.6497 -1.2475 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6238 -2.5567 0.8903 31 1 0.9149 -4.8186 1.1429 32 1 0.8797 -5.1266 -0.6103 33 1 3.1380 -5.8260 1.3229 34 1 2.0623 -6.9693 0.4764 35 1 3.3684 -8.6597 -0.0165 36 1 1.9847 -8.3108 -1.0805 37 1 1.8875 -9.1742 -3.2939 38 1 5.5791 -12.8974 -4.0741 39 1 4.5813 -4.8186 -2.0957 40 1 4.8002 -4.4070 -0.3743 41 1 2.3162 -3.9003 -2.0771 42 1 3.4276 -2.6728 -1.4236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183655457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -111.560490 kcal Electronic energy + Delta-G solvation = -29506.490010 eV Core-core repulsion = 25015.856382 eV Total energy + Delta-G solvation = -4490.633628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.97324 -43.08305 -41.21330 -39.85645 -38.99023 -37.97350 -36.05923 -35.83980 -34.41323 -32.53025 -31.90908 -30.42225 -29.07716 -27.18186 -26.31019 -24.95173 -24.30168 -23.86264 -22.19848 -21.17710 -20.26715 -19.74016 -19.12787 -18.74089 -18.44423 -17.70424 -17.52228 -17.05146 -16.82129 -16.61143 -16.29955 -16.13975 -15.92811 -15.92244 -15.44740 -15.39768 -15.24164 -15.01418 -14.71510 -14.62563 -14.26051 -14.04908 -13.55570 -13.31313 -13.10152 -13.02803 -12.78470 -12.55959 -12.36203 -12.33397 -12.26776 -12.18609 -11.73761 -11.54570 -11.34279 -11.27586 -10.99374 -10.60567 -9.86105 -9.67477 -9.02601 -8.20675 -6.29689 -0.68140 0.24945 0.94737 1.36601 1.42605 1.44045 1.51901 1.83097 1.86053 2.39200 2.40910 2.65762 3.12056 3.15977 3.21947 3.25681 3.34865 3.72220 3.88260 3.95106 4.03590 4.09122 4.24134 4.25412 4.27654 4.46316 4.56241 4.72754 4.87316 4.91477 4.94451 4.95556 5.05237 5.17350 5.25019 5.39117 5.64344 5.97960 6.04902 6.17513 6.32585 6.39967 6.62299 6.78571 6.85821 6.90392 7.40025 8.89720 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.002182 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.120442 B =12827.657796 C =13059.182113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.211 3.789 10 N -0.545 5.545 11 C 0.035 3.965 12 C 0.114 3.886 13 N -0.602 5.602 14 C 0.499 3.501 15 O -0.580 6.580 16 C 0.079 3.921 17 N -0.498 5.498 18 C 0.201 3.799 19 C -0.070 4.070 20 F -0.112 7.112 21 C 0.452 3.548 22 O -0.432 6.432 23 N -0.618 5.618 24 C 0.651 3.349 25 O -0.567 6.567 26 C 0.127 3.873 27 C 0.060 3.940 28 H 0.264 0.736 29 H -0.037 1.037 30 H 0.013 0.987 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.187 0.813 37 H 0.241 0.759 38 H 0.439 0.561 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.018 0.982 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -24.459 -5.399 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.085 3.915 10 N -0.270 5.270 11 C -0.094 4.094 12 C -0.007 4.007 13 N -0.335 5.335 14 C 0.287 3.713 15 O -0.461 6.461 16 C -0.046 4.046 17 N -0.213 5.213 18 C 0.065 3.935 19 C -0.098 4.098 20 F -0.091 7.091 21 C 0.250 3.750 22 O -0.229 6.229 23 N -0.376 5.376 24 C 0.353 3.647 25 O -0.444 6.444 26 C 0.004 3.996 27 C -0.069 4.069 28 H 0.073 0.927 29 H -0.020 1.020 30 H 0.031 0.969 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.204 0.796 37 H 0.257 0.743 38 H 0.300 0.700 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.036 0.964 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.722 -24.343 -4.869 24.974 hybrid contribution -0.416 1.311 -0.925 1.658 sum 2.306 -23.033 -5.795 23.862 Atomic orbital electron populations 1.70053 1.07537 1.27898 1.51733 1.25828 0.95691 1.02927 0.94937 0.85528 0.78226 0.78413 0.79015 1.19530 1.21023 1.19401 1.21451 0.93619 0.91236 1.50011 0.91987 1.19339 0.89915 0.88507 0.93788 1.61972 1.27315 1.03546 1.34134 1.22574 0.95772 0.89451 1.01592 1.22186 0.90808 1.00194 0.87560 1.48242 1.46791 1.07785 1.30638 1.21186 0.81605 0.86112 0.82387 1.90730 1.39079 1.86194 1.30055 1.22275 1.04340 0.81802 0.96169 1.45895 1.23737 1.30422 1.21222 1.22935 0.96331 0.91840 0.82387 1.16493 0.96660 1.05075 0.91595 1.91590 1.77402 1.93099 1.46976 1.20717 0.86057 0.83599 0.84623 1.85047 1.48762 1.43505 1.45584 1.69698 1.34938 1.24029 1.08980 1.17454 0.79998 0.80857 0.86403 1.91005 1.55598 1.70161 1.27678 1.21612 0.94885 0.81632 1.01508 1.22208 0.95324 0.99062 0.90293 0.92715 1.01960 0.96937 0.89030 0.94910 0.89622 0.84863 0.83488 0.79566 0.74327 0.70019 0.89809 0.90656 0.96423 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.52 -28.22 8.41 25.60 0.22 -28.00 16 8 H 0.06 3.28 7.13 -2.91 -0.02 3.26 16 9 C 0.21 10.32 4.72 85.56 0.40 10.72 16 10 N -0.54 -20.64 4.62 -899.85 -4.16 -24.80 16 11 C 0.03 0.93 5.62 86.38 0.49 1.41 16 12 C 0.11 2.09 6.50 86.35 0.56 2.65 16 13 N -0.60 -14.36 3.01 -817.94 -2.46 -16.82 16 14 C 0.50 11.63 7.77 87.66 0.68 12.31 16 15 O -0.58 -18.78 15.88 -3.02 -0.05 -18.83 16 16 C 0.08 1.03 4.20 85.63 0.36 1.39 16 17 N -0.50 -8.54 2.09 -661.51 -1.38 -9.92 16 18 C 0.20 2.19 10.38 83.39 0.87 3.06 16 19 C -0.07 -1.01 7.32 22.32 0.16 -0.84 16 20 F -0.11 -1.64 17.17 44.97 0.77 -0.87 16 21 C 0.45 7.69 7.92 85.26 0.67 8.37 16 22 O -0.43 -5.09 13.46 -84.71 -1.14 -6.23 16 23 N -0.62 -14.51 10.40 -438.68 -4.56 -19.07 16 24 C 0.65 17.03 8.34 179.59 1.50 18.53 16 25 O -0.57 -19.28 16.72 -5.30 -0.09 -19.37 16 26 C 0.13 3.75 6.60 86.35 0.57 4.32 16 27 C 0.06 2.14 5.46 86.38 0.47 2.61 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H -0.04 -2.01 8.12 -2.39 -0.02 -2.03 16 30 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 31 H 0.09 2.34 7.99 -2.39 -0.02 2.32 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.13 1.02 6.02 -2.39 -0.01 1.00 16 35 H 0.15 1.82 7.24 -2.39 -0.02 1.80 16 36 H 0.19 0.24 7.55 -2.39 -0.02 0.22 16 37 H 0.24 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.44 1.65 8.98 -74.06 -0.66 0.99 16 39 H 0.08 2.59 7.06 -2.39 -0.02 2.57 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 2.99 6.67 -2.39 -0.02 2.97 16 Total: -1.00 -85.12 359.83 -2.92 -88.04 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: 0.42 Total: -0.74 kcal Atomic # 6 Polarization: 29.83 SS G_CDS: 7.41 Total: 37.24 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -12.28 Total: -124.24 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.28 Total: -44.42 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.77 Total: -0.87 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -85.12 -2.92 -88.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183655457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.520 kcal (2) G-P(sol) polarization free energy of solvation -85.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds