Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48502 * 109.47402 * 270.00370 * 3 2 1 5 5 H 1.48499 * 109.46967 * 30.00498 * 3 2 1 6 6 H 1.48503 * 109.46886 * 150.00443 * 3 2 1 7 7 C 1.37883 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99725 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99852 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40078 * 66.45981 * 9 7 2 11 11 O 1.42095 * 106.40556 * 293.54010 * 9 7 2 12 12 N 1.65595 * 107.21633 * 179.97438 * 9 7 2 13 13 C 1.47081 * 120.88065 * 270.02227 * 12 9 7 14 14 C 1.53248 * 108.52132 * 231.16420 * 13 12 9 15 15 N 1.46906 * 109.33771 * 306.17129 * 14 13 12 16 16 C 1.46899 * 110.99731 * 187.25209 * 15 14 13 17 17 C 1.50703 * 109.47107 * 45.70048 * 16 15 14 18 18 C 1.38234 * 119.99770 * 269.72522 * 17 16 15 19 19 C 1.38239 * 119.99901 * 179.76875 * 18 17 16 20 20 C 1.38238 * 119.99492 * 0.48004 * 19 18 17 21 21 C 1.38225 * 120.00505 * 359.79428 * 20 19 18 22 22 C 1.38232 * 119.99860 * 89.99965 * 17 16 15 23 23 C 1.46901 * 111.26640 * 63.10581 * 15 14 13 24 24 H 1.08995 * 109.49542 * 56.85580 * 23 15 14 25 25 C 1.53003 * 109.49049 * 176.93406 * 23 15 14 26 26 O 1.42902 * 109.46877 * 64.99780 * 25 23 15 27 27 C 1.47079 * 120.88317 * 90.00339 * 12 9 7 28 28 H 0.96994 * 119.99855 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.63173 * 350.87060 * 13 12 9 30 30 H 1.09001 * 109.62495 * 111.45942 * 13 12 9 31 31 H 1.08998 * 109.49448 * 186.21241 * 14 13 12 32 32 H 1.08995 * 109.49212 * 66.12742 * 14 13 12 33 33 H 1.09002 * 109.47043 * 165.70028 * 16 15 14 34 34 H 1.09001 * 109.47354 * 285.70090 * 16 15 14 35 35 H 1.08001 * 120.00330 * 359.97438 * 18 17 16 36 36 H 1.07993 * 120.00120 * 180.25541 * 19 18 17 37 37 H 1.08006 * 119.99203 * 179.76993 * 20 19 18 38 38 H 1.07998 * 120.00220 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00407 * 0.02562 * 22 17 16 40 40 H 1.08995 * 109.47205 * 185.00314 * 25 23 15 41 41 H 1.09002 * 109.46761 * 305.00238 * 25 23 15 42 42 H 0.96710 * 113.99403 * 180.02562 * 26 25 23 43 43 H 1.09007 * 109.62759 * 9.12182 * 27 12 9 44 44 H 1.08996 * 109.63149 * 248.54964 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1674 -0.6495 -1.2509 12 7 4.2567 -2.7759 -0.0011 13 6 4.4801 -3.4968 1.2613 14 6 5.8667 -4.1475 1.2115 15 7 5.9749 -4.9698 -0.0011 16 6 7.2221 -5.7459 -0.0012 17 6 7.4187 -6.3809 1.3513 18 6 8.1159 -5.7070 2.3365 19 6 8.2922 -6.2874 3.5787 20 6 7.7797 -7.5460 3.8324 21 6 7.0875 -8.2223 2.8455 22 6 6.9067 -7.6397 1.6049 23 6 5.8662 -4.1478 -1.2137 24 1 6.6316 -3.3720 -1.1971 25 6 6.0602 -5.0308 -2.4481 26 8 4.9890 -5.9729 -2.5329 27 6 4.4797 -3.4973 -1.2632 28 1 -0.4849 0.8400 0.0004 29 1 4.4339 -2.7972 2.0957 30 1 3.7184 -4.2670 1.3828 31 1 6.0052 -4.7763 2.0909 32 1 6.6321 -3.3717 1.1943 33 1 7.1660 -6.5235 -0.7630 34 1 8.0614 -5.0850 -0.2177 35 1 8.5201 -4.7255 2.1368 36 1 8.8333 -5.7592 4.3496 37 1 7.9207 -8.0009 4.8017 38 1 6.6875 -9.2057 3.0436 39 1 6.3662 -8.1682 0.8337 40 1 6.0682 -4.4082 -3.3426 41 1 7.0075 -5.5641 -2.3680 42 1 5.0474 -6.5674 -3.2935 43 1 4.4330 -2.7978 -2.0979 44 1 3.7179 -4.2674 -1.3844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -78.896409 kcal Electronic energy + Delta-G solvation = -28617.425994 eV Core-core repulsion = 24662.129212 eV Total energy + Delta-G solvation = -3955.296782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03327 -38.61312 -36.33032 -35.68424 -34.63202 -34.41187 -32.98652 -31.84910 -31.11578 -30.77629 -27.51109 -26.35108 -26.11379 -24.00364 -22.81132 -22.08417 -21.16111 -19.78765 -18.70811 -17.53643 -17.26371 -16.87406 -16.79963 -16.02358 -15.53416 -15.35576 -15.07992 -14.84072 -14.63762 -14.26298 -13.88838 -13.84659 -13.49859 -13.46097 -13.30761 -13.09649 -12.81652 -12.77745 -12.43988 -12.07073 -11.87607 -11.67031 -11.36365 -11.25223 -11.12919 -11.04490 -10.86313 -10.71803 -10.55485 -10.44623 -10.27485 -10.00462 -9.75773 -9.18403 -9.10928 -9.01313 -8.89705 -8.39208 -7.98719 -6.77003 -5.29847 1.19433 1.29436 2.03089 3.07999 3.18484 3.27468 3.55027 3.96827 4.02075 4.18866 4.28752 4.59880 4.61693 4.72164 4.88058 4.94422 4.99012 5.01610 5.17716 5.21569 5.36956 5.40733 5.43883 5.46068 5.51620 5.55360 5.59752 5.69847 5.75539 5.87983 5.91220 5.95326 6.03044 6.13080 6.32628 6.35616 6.39329 6.50072 6.52258 6.64939 6.87004 7.13766 7.16173 7.38756 7.52348 7.67612 8.27818 8.74173 10.35681 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003571 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.037082 B = 7838.118855 C = 8670.491927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.122 0.878 9 S 2.676 3.324 10 O -1.008 7.008 11 O -1.011 7.011 12 N -1.004 6.004 13 C 0.129 3.871 14 C 0.040 3.960 15 N -0.513 5.513 16 C 0.091 3.909 17 C -0.079 4.079 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.097 4.097 23 C 0.074 3.926 24 H 0.057 0.943 25 C 0.082 3.918 26 O -0.552 6.552 27 C 0.138 3.862 28 H 0.280 0.720 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.371 0.629 43 H 0.094 0.906 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 -15.676 0.589 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.140 0.860 9 S 2.779 3.221 10 O -0.998 6.998 11 O -1.001 7.001 12 N -0.840 5.840 13 C 0.003 3.997 14 C -0.089 4.089 15 N -0.238 5.238 16 C -0.036 4.036 17 C -0.080 4.080 18 C -0.133 4.133 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.115 4.115 23 C -0.036 4.036 24 H 0.074 0.926 25 C 0.003 3.997 26 O -0.355 6.355 27 C 0.012 3.988 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.217 0.783 43 H 0.112 0.888 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.564 -14.845 1.134 21.539 hybrid contribution 0.393 0.736 -0.465 0.955 sum 15.957 -14.109 0.669 21.311 Atomic orbital electron populations 1.69997 1.06567 1.28947 1.39747 1.24445 0.94781 0.98747 0.88688 0.87884 0.83613 0.84643 0.81801 1.17032 1.17861 1.14237 1.30556 1.15724 1.02179 1.66438 0.86007 1.01375 0.77304 0.70236 0.73154 1.93441 1.85364 1.75769 1.45212 1.93381 1.85400 1.75901 1.45427 1.57720 1.84556 1.31176 1.10508 1.21376 0.95596 0.96468 0.86306 1.22643 0.97652 0.95437 0.93216 1.61999 1.33836 1.26283 1.01717 1.21155 0.90981 0.97198 0.94247 1.19776 0.97818 0.94793 0.95579 1.21125 0.99135 0.99634 0.93424 1.21111 1.00334 0.95658 0.96859 1.21143 0.98537 0.95237 0.99142 1.21158 0.99241 1.00040 0.93591 1.21046 0.98484 0.94856 0.97153 1.22154 0.99163 0.93231 0.89080 0.92564 1.22222 0.89694 0.90998 0.96739 1.86660 1.47907 1.49753 1.51222 1.21294 0.95089 0.96345 0.86092 0.90955 0.88599 0.91207 0.89230 0.94718 0.89634 0.94378 0.86324 0.86160 0.86314 0.86171 0.85801 0.92849 0.93558 0.78297 0.88817 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.26 13.96 55.43 0.77 -23.49 16 2 C 0.15 4.48 5.47 -17.82 -0.10 4.39 16 3 Si 0.80 20.90 26.54 -169.99 -4.51 16.39 16 4 H -0.25 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.22 -5.84 5.61 56.52 0.32 -5.52 16 7 C -1.01 -29.17 10.29 30.60 0.31 -28.86 16 8 H 0.12 3.58 8.06 -52.49 -0.42 3.16 16 9 S 2.68 68.59 4.24 -107.50 -0.46 68.14 16 10 O -1.01 -27.28 14.63 -57.17 -0.84 -28.12 16 11 O -1.01 -27.16 15.44 -57.17 -0.88 -28.05 16 12 N -1.00 -20.65 3.33 -113.23 -0.38 -21.03 16 13 C 0.13 2.31 6.66 -3.60 -0.02 2.29 16 14 C 0.04 0.59 4.78 -3.69 -0.02 0.57 16 15 N -0.51 -7.09 4.57 -227.77 -1.04 -8.13 16 16 C 0.09 1.01 4.47 -4.98 -0.02 0.99 16 17 C -0.08 -0.87 4.11 -104.62 -0.43 -1.30 16 18 C -0.11 -1.20 7.79 -39.58 -0.31 -1.51 16 19 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 20 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 21 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 23 C 0.07 1.06 2.36 -67.59 -0.16 0.90 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 C 0.08 0.90 6.27 37.16 0.23 1.13 16 26 O -0.55 -6.26 12.63 -35.23 -0.44 -6.70 16 27 C 0.14 2.48 5.84 -3.60 -0.02 2.46 16 28 H 0.28 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.10 1.77 6.93 -51.93 -0.36 1.41 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.23 5.55 -51.93 -0.29 0.94 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.86 6.68 -51.93 -0.35 0.52 16 34 H 0.04 0.40 8.02 -51.93 -0.42 -0.02 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.41 6.25 -51.93 -0.32 0.08 16 42 H 0.37 2.40 9.12 45.56 0.42 2.81 16 43 H 0.09 1.73 6.93 -51.93 -0.36 1.37 16 44 H 0.08 1.49 7.38 -51.93 -0.38 1.10 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -34.80 359.13 -9.98 -44.79 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.51 Total: 5.73 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.11 Total: -24.95 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.64 Total: -52.65 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -2.16 Total: -62.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.51 Total: 16.39 kcal Atomic # 16 Polarization: 68.59 SS G_CDS: -0.46 Total: 68.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.80 -9.98 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.109 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds