Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48502 * 109.47402 * 270.00370 * 3 2 1 5 5 H 1.48499 * 109.46967 * 30.00498 * 3 2 1 6 6 H 1.48503 * 109.46886 * 150.00443 * 3 2 1 7 7 C 1.37883 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99725 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99852 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40078 * 66.45981 * 9 7 2 11 11 O 1.42095 * 106.40556 * 293.54010 * 9 7 2 12 12 N 1.65595 * 107.21633 * 179.97438 * 9 7 2 13 13 C 1.47081 * 120.88065 * 270.02227 * 12 9 7 14 14 C 1.53248 * 108.52132 * 231.16420 * 13 12 9 15 15 N 1.46906 * 109.33771 * 306.17129 * 14 13 12 16 16 C 1.46899 * 110.99731 * 187.25209 * 15 14 13 17 17 C 1.50703 * 109.47107 * 45.70048 * 16 15 14 18 18 C 1.38234 * 119.99770 * 269.72522 * 17 16 15 19 19 C 1.38239 * 119.99901 * 179.76875 * 18 17 16 20 20 C 1.38238 * 119.99492 * 0.48004 * 19 18 17 21 21 C 1.38225 * 120.00505 * 359.79428 * 20 19 18 22 22 C 1.38232 * 119.99860 * 89.99965 * 17 16 15 23 23 C 1.46901 * 111.26640 * 63.10581 * 15 14 13 24 24 H 1.08995 * 109.49542 * 56.85580 * 23 15 14 25 25 C 1.53003 * 109.49049 * 176.93406 * 23 15 14 26 26 O 1.42902 * 109.46877 * 64.99780 * 25 23 15 27 27 C 1.47079 * 120.88317 * 90.00339 * 12 9 7 28 28 H 0.96994 * 119.99855 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.63173 * 350.87060 * 13 12 9 30 30 H 1.09001 * 109.62495 * 111.45942 * 13 12 9 31 31 H 1.08998 * 109.49448 * 186.21241 * 14 13 12 32 32 H 1.08995 * 109.49212 * 66.12742 * 14 13 12 33 33 H 1.09002 * 109.47043 * 165.70028 * 16 15 14 34 34 H 1.09001 * 109.47354 * 285.70090 * 16 15 14 35 35 H 1.08001 * 120.00330 * 359.97438 * 18 17 16 36 36 H 1.07993 * 120.00120 * 180.25541 * 19 18 17 37 37 H 1.08006 * 119.99203 * 179.76993 * 20 19 18 38 38 H 1.07998 * 120.00220 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00407 * 0.02562 * 22 17 16 40 40 H 1.08995 * 109.47205 * 185.00314 * 25 23 15 41 41 H 1.09002 * 109.46761 * 305.00238 * 25 23 15 42 42 H 0.96710 * 113.99403 * 180.02562 * 26 25 23 43 43 H 1.09007 * 109.62759 * 9.12182 * 27 12 9 44 44 H 1.08996 * 109.63149 * 248.54964 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1674 -0.6495 -1.2509 12 7 4.2567 -2.7759 -0.0011 13 6 4.4801 -3.4968 1.2613 14 6 5.8667 -4.1475 1.2115 15 7 5.9749 -4.9698 -0.0011 16 6 7.2221 -5.7459 -0.0012 17 6 7.4187 -6.3809 1.3513 18 6 8.1159 -5.7070 2.3365 19 6 8.2922 -6.2874 3.5787 20 6 7.7797 -7.5460 3.8324 21 6 7.0875 -8.2223 2.8455 22 6 6.9067 -7.6397 1.6049 23 6 5.8662 -4.1478 -1.2137 24 1 6.6316 -3.3720 -1.1971 25 6 6.0602 -5.0308 -2.4481 26 8 4.9890 -5.9729 -2.5329 27 6 4.4797 -3.4973 -1.2632 28 1 -0.4849 0.8400 0.0004 29 1 4.4339 -2.7972 2.0957 30 1 3.7184 -4.2670 1.3828 31 1 6.0052 -4.7763 2.0909 32 1 6.6321 -3.3717 1.1943 33 1 7.1660 -6.5235 -0.7630 34 1 8.0614 -5.0850 -0.2177 35 1 8.5201 -4.7255 2.1368 36 1 8.8333 -5.7592 4.3496 37 1 7.9207 -8.0009 4.8017 38 1 6.6875 -9.2057 3.0436 39 1 6.3662 -8.1682 0.8337 40 1 6.0682 -4.4082 -3.3426 41 1 7.0075 -5.5641 -2.3680 42 1 5.0474 -6.5674 -3.2935 43 1 4.4330 -2.7978 -2.0979 44 1 3.7179 -4.2674 -1.3844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -107.454194 kcal Electronic energy + Delta-G solvation = -28618.664352 eV Core-core repulsion = 24662.129212 eV Total energy + Delta-G solvation = -3956.535140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98254 -39.54664 -37.81484 -37.26200 -36.54780 -35.84885 -35.20206 -32.90704 -32.01858 -31.65440 -28.62361 -28.55076 -27.21190 -25.11908 -23.73082 -23.14114 -22.00840 -21.03405 -20.68200 -19.26275 -18.77604 -18.25401 -17.67236 -17.34112 -17.08879 -16.48310 -16.24188 -16.17300 -15.84590 -15.54524 -15.39931 -15.27530 -15.02597 -14.75433 -14.55317 -14.22372 -14.11442 -13.78260 -13.69092 -13.49160 -13.29391 -13.10541 -12.99690 -12.89622 -12.68247 -12.49842 -12.26911 -12.19158 -11.95422 -11.81462 -11.58883 -11.53049 -11.36089 -11.23557 -10.80905 -9.92999 -9.72986 -9.65521 -9.15178 -8.99144 -7.55746 0.05057 0.45368 0.56902 1.01663 1.11322 1.18140 1.86274 2.34379 2.39210 2.70682 3.12599 3.32677 3.43714 3.73126 3.77976 3.83290 3.99428 4.12361 4.15713 4.21436 4.22132 4.32280 4.36483 4.41468 4.48557 4.52512 4.57307 4.69124 4.71919 4.76158 4.80565 4.86482 4.94457 5.08035 5.15708 5.16948 5.23093 5.37256 5.61267 5.68862 5.75409 5.76478 5.98400 6.02779 6.10645 6.19151 6.50186 7.09886 8.19283 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003571 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.037082 B = 7838.118855 C = 8670.491927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.107 3.893 3 Si 0.826 3.174 4 H -0.236 1.236 5 H -0.216 1.216 6 H -0.229 1.229 7 C -1.042 5.042 8 H 0.099 0.901 9 S 2.697 3.303 10 O -1.024 7.024 11 O -1.024 7.024 12 N -1.001 6.001 13 C 0.120 3.880 14 C 0.050 3.950 15 N -0.519 5.519 16 C 0.095 3.905 17 C -0.093 4.093 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.107 4.107 23 C 0.073 3.927 24 H 0.056 0.944 25 C 0.088 3.912 26 O -0.574 6.574 27 C 0.131 3.869 28 H 0.292 0.708 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.393 0.607 43 H 0.084 0.916 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.628 -16.745 0.653 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.110 4.110 3 Si 0.643 3.357 4 H -0.160 1.160 5 H -0.138 1.138 6 H -0.151 1.151 7 C -1.174 5.174 8 H 0.118 0.882 9 S 2.798 3.202 10 O -1.014 7.014 11 O -1.015 7.015 12 N -0.839 5.839 13 C -0.006 4.006 14 C -0.079 4.079 15 N -0.245 5.245 16 C -0.031 4.031 17 C -0.093 4.093 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.126 4.126 23 C -0.037 4.037 24 H 0.074 0.926 25 C 0.009 3.991 26 O -0.381 6.381 27 C 0.006 3.994 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.242 0.758 43 H 0.102 0.898 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.417 -15.920 1.183 23.626 hybrid contribution -0.213 0.898 -0.460 1.031 sum 17.205 -15.022 0.723 22.851 Atomic orbital electron populations 1.70022 1.07527 1.30541 1.40341 1.25228 0.95686 1.01548 0.88518 0.87477 0.82875 0.82593 0.82786 1.15963 1.13815 1.15140 1.31108 1.18357 1.01508 1.66447 0.88225 1.00577 0.75648 0.71557 0.72374 1.93408 1.84969 1.77218 1.45800 1.93349 1.84977 1.77277 1.45869 1.57428 1.83924 1.29987 1.12603 1.21609 0.98001 0.96193 0.84752 1.22504 0.95163 0.95612 0.94645 1.61965 1.35873 1.25775 1.00844 1.21189 0.89754 0.97136 0.95016 1.19821 0.98640 0.95235 0.95622 1.21258 0.99469 0.99910 0.93873 1.21379 1.00345 0.96044 0.96972 1.21459 0.97852 0.95090 1.00031 1.21442 0.99011 1.00876 0.93301 1.21209 0.98662 0.94893 0.97819 1.22152 0.96331 0.94097 0.91143 0.92630 1.22183 0.90684 0.91006 0.95199 1.86595 1.48343 1.50351 1.52822 1.21492 0.97715 0.95794 0.84406 0.89766 0.89585 0.90891 0.87846 0.94873 0.88270 0.93542 0.86145 0.84649 0.84274 0.84376 0.85359 0.91721 0.90775 0.75788 0.89818 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.00 13.96 21.45 0.30 -50.70 16 2 C 0.11 6.35 5.47 84.66 0.46 6.81 16 3 Si 0.83 42.04 26.54 68.60 1.82 43.86 16 4 H -0.24 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.22 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.23 -11.94 5.61 99.48 0.56 -11.39 16 7 C -1.04 -61.64 10.29 67.74 0.70 -60.95 16 8 H 0.10 6.14 8.06 -2.91 -0.02 6.11 16 9 S 2.70 140.08 4.24 -56.49 -0.24 139.84 16 10 O -1.02 -55.87 14.63 -128.00 -1.87 -57.74 16 11 O -1.02 -55.34 15.44 -128.00 -1.98 -57.32 16 12 N -1.00 -41.59 3.33 -512.16 -1.71 -43.30 16 13 C 0.12 4.32 6.66 86.35 0.58 4.90 16 14 C 0.05 1.45 4.78 86.38 0.41 1.86 16 15 N -0.52 -13.49 4.57 -874.54 -3.99 -17.49 16 16 C 0.10 1.88 4.47 85.56 0.38 2.27 16 17 C -0.09 -1.84 4.11 -19.87 -0.08 -1.92 16 18 C -0.13 -2.43 7.79 22.27 0.17 -2.25 16 19 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 20 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 21 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 22 C -0.11 -2.01 9.70 22.27 0.22 -1.79 16 23 C 0.07 1.99 2.36 45.00 0.11 2.10 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 C 0.09 1.70 6.27 71.98 0.45 2.15 16 26 O -0.57 -11.78 12.63 -148.98 -1.88 -13.67 16 27 C 0.13 4.71 5.84 86.35 0.50 5.21 16 28 H 0.29 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.09 3.24 6.93 -2.39 -0.02 3.22 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.10 2.70 5.55 -2.39 -0.01 2.69 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.69 6.68 -2.39 -0.02 1.68 16 34 H 0.05 0.85 8.02 -2.39 -0.02 0.84 16 35 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.04 6.25 -2.39 -0.01 1.02 16 42 H 0.39 4.09 9.12 -74.05 -0.68 3.42 16 43 H 0.08 3.13 6.93 -2.38 -0.02 3.11 16 44 H 0.08 2.82 7.38 -2.39 -0.02 2.80 16 Total: -1.00 -75.05 359.13 -4.78 -79.83 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.19 Total: 23.98 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 4.57 Total: -47.30 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -5.40 Total: -111.48 kcal Atomic # 8 Polarization: -123.00 SS G_CDS: -5.73 Total: -128.73 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.82 Total: 43.86 kcal Atomic # 16 Polarization: 140.08 SS G_CDS: -0.24 Total: 139.84 kcal Total: -75.05 -4.78 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.622 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds