Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47446 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47554 * 300.00572 * 3 2 1 6 6 H 1.48509 * 109.47038 * 60.00407 * 3 2 1 7 7 C 1.37879 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99861 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99813 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40138 * 66.46498 * 9 7 2 11 11 O 1.42101 * 106.40352 * 293.54194 * 9 7 2 12 12 N 1.65600 * 107.21607 * 180.02562 * 9 7 2 13 13 C 1.46495 * 120.00112 * 65.00112 * 12 9 7 14 14 C 1.52999 * 109.47225 * 163.94321 * 13 12 9 15 15 C 1.53005 * 109.61553 * 185.26456 * 14 13 12 16 16 C 1.50702 * 109.46847 * 303.82356 * 15 14 13 17 17 C 1.38653 * 120.79116 * 270.38212 * 16 15 14 18 18 C 1.38197 * 119.16112 * 179.75736 * 17 16 15 19 19 N 1.31876 * 120.76605 * 0.53119 * 18 17 16 20 20 C 1.31869 * 121.72297 * 359.73832 * 19 18 17 21 21 C 1.38209 * 120.76594 * 359.97438 * 20 19 18 22 22 C 1.53201 * 109.54481 * 65.04603 * 14 13 12 23 23 C 1.53089 * 109.15360 * 183.16074 * 22 14 13 24 24 O 1.42904 * 109.42450 * 57.60087 * 23 22 14 25 25 C 1.42904 * 114.09776 * 298.83887 * 24 23 22 26 26 C 1.53089 * 109.41675 * 61.15616 * 25 24 23 27 27 H 0.97003 * 119.99881 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99794 * 245.00037 * 12 9 7 29 29 H 1.08998 * 109.47294 * 43.93875 * 13 12 9 30 30 H 1.08996 * 109.47228 * 283.94194 * 13 12 9 31 31 H 1.08999 * 109.47171 * 63.82761 * 15 14 13 32 32 H 1.09003 * 109.46752 * 183.82395 * 15 14 13 33 33 H 1.08003 * 120.41544 * 0.02562 * 17 16 15 34 34 H 1.08001 * 119.62094 * 180.24648 * 18 17 16 35 35 H 1.08004 * 119.61607 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.41538 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.54017 * 63.24828 * 22 14 13 38 38 H 1.08998 * 109.51445 * 303.05409 * 22 14 13 39 39 H 1.09004 * 109.47887 * 297.61587 * 23 22 14 40 40 H 1.08997 * 109.48026 * 177.59263 * 23 22 14 41 41 H 1.08997 * 109.48055 * 181.14349 * 25 24 23 42 42 H 1.09006 * 109.47774 * 301.15966 * 25 24 23 43 43 H 1.09004 * 109.51930 * 62.30050 * 26 25 24 44 44 H 1.08998 * 109.51972 * 182.41851 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1089 1.1493 14 6 3.7845 -5.4949 1.0900 15 6 4.6126 -5.7305 2.3548 16 6 5.6288 -4.6275 2.5025 17 6 6.8882 -4.7418 1.9338 18 6 7.7922 -3.7077 2.0860 19 7 7.4720 -2.6272 2.7710 20 6 6.2860 -2.4866 3.3299 21 6 5.3285 -3.4767 3.2151 22 6 4.6920 -5.5855 -0.1409 23 6 5.2707 -6.9997 -0.2353 24 8 4.2026 -7.9470 -0.2981 25 6 3.3488 -7.9405 0.8478 26 6 2.6927 -6.5643 0.9858 27 1 -0.4850 0.8401 0.0004 28 1 2.3171 -4.5325 -0.7619 29 1 2.5655 -4.0143 2.0711 30 1 3.9164 -3.3450 1.1252 31 1 3.9547 -5.7372 3.2238 32 1 5.1254 -6.6894 2.2799 33 1 7.1577 -5.6260 1.3753 34 1 8.7738 -3.7872 1.6427 35 1 6.0602 -1.5873 3.8838 36 1 4.3588 -3.3554 3.6748 37 1 5.5045 -4.8649 -0.0487 38 1 4.1118 -5.3688 -1.0378 39 1 5.8838 -7.2009 0.6432 40 1 5.8834 -7.0826 -1.1329 41 1 2.5770 -8.7011 0.7303 42 1 3.9369 -8.1543 1.7404 43 1 2.0721 -6.3673 0.1116 44 1 2.0746 -6.5438 1.8834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -113.384976 kcal Electronic energy + Delta-G solvation = -29056.625179 eV Core-core repulsion = 25099.832861 eV Total energy + Delta-G solvation = -3956.792318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93591 -39.52233 -36.50019 -35.19697 -33.96496 -33.77335 -33.07324 -31.89386 -31.47006 -30.94793 -27.96820 -26.15082 -26.07293 -23.80517 -23.39622 -22.77304 -22.22537 -19.01382 -18.71125 -17.47228 -16.79092 -16.59032 -16.22273 -16.15425 -16.10262 -15.64301 -15.09211 -15.05805 -14.78061 -14.59940 -14.07538 -14.00769 -13.70294 -13.51397 -13.40742 -13.02891 -12.88411 -12.44580 -12.17492 -11.99841 -11.75786 -11.60948 -11.38883 -11.28208 -11.24423 -11.22048 -10.60456 -10.54117 -10.44807 -10.30328 -10.22954 -10.19867 -9.65849 -9.46813 -9.34570 -9.26733 -9.16837 -8.98922 -8.46852 -6.71325 -5.32824 1.11310 1.20981 2.33702 3.04394 3.13301 3.20957 3.77325 3.78413 4.05623 4.34067 4.45884 4.49286 4.57669 4.63572 4.72600 4.82038 4.87061 4.93384 4.99880 5.06635 5.13080 5.13776 5.21270 5.44215 5.47982 5.55919 5.58857 5.64556 5.69003 5.75745 5.76596 5.81364 5.92806 5.99287 6.04332 6.13349 6.21646 6.26239 6.32277 6.50246 6.68390 6.82302 7.09021 7.31289 7.87530 7.96223 7.97385 8.88556 10.22809 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.005092 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.507420 B = 5497.282717 C = 7433.984719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.270 1.270 7 C -1.019 5.019 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.008 7.008 11 O -1.008 7.008 12 N -1.135 6.135 13 C 0.139 3.861 14 C -0.058 4.058 15 C -0.079 4.079 16 C -0.032 4.032 17 C -0.174 4.174 18 C 0.096 3.904 19 N -0.491 5.491 20 C 0.103 3.897 21 C -0.165 4.165 22 C -0.152 4.152 23 C 0.060 3.940 24 O -0.382 6.382 25 C 0.059 3.941 26 C -0.147 4.147 27 H 0.290 0.710 28 H 0.401 0.599 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.327 -12.832 5.235 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.084 4.084 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.152 5.152 8 H 0.119 0.881 9 S 2.815 3.185 10 O -0.998 6.998 11 O -0.998 6.998 12 N -0.891 5.891 13 C 0.011 3.989 14 C -0.060 4.060 15 C -0.117 4.117 16 C -0.040 4.040 17 C -0.194 4.194 18 C -0.061 4.061 19 N -0.200 5.200 20 C -0.054 4.054 21 C -0.185 4.185 22 C -0.190 4.190 23 C -0.016 4.016 24 O -0.301 6.301 25 C -0.017 4.017 26 C -0.185 4.185 27 H 0.100 0.900 28 H 0.233 0.767 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.773 -12.218 5.346 18.466 hybrid contribution 0.408 0.656 -0.243 0.810 sum 13.181 -11.562 5.103 18.261 Atomic orbital electron populations 1.69904 1.06768 1.30603 1.40254 1.24729 0.94425 1.00786 0.88486 0.86177 0.80537 0.80544 0.78616 1.18597 1.19595 1.19550 1.30564 1.06044 1.11881 1.66718 0.88073 1.00375 0.72075 0.73253 0.72804 1.93376 1.73131 1.87658 1.45643 1.93350 1.72921 1.87550 1.45949 1.56016 1.55677 1.51060 1.26333 1.21134 0.93230 0.94874 0.89633 1.20739 0.94978 0.96048 0.94201 1.20849 0.96013 0.96349 0.98471 1.20223 0.94343 0.95339 0.94070 1.22009 0.94360 1.00986 1.02012 1.22702 0.99342 0.89057 0.94989 1.67674 1.19970 1.23759 1.08577 1.22799 0.88551 0.98268 0.95740 1.22198 1.01365 0.94393 1.00518 1.22348 1.00260 0.97694 0.98652 1.22634 0.89137 0.88139 1.01723 1.87935 1.41749 1.58494 1.41928 1.22642 0.93395 0.97202 0.88497 1.22276 0.97894 0.94059 1.04266 0.89955 0.76713 0.90588 0.92113 0.89704 0.90041 0.85146 0.83130 0.82683 0.84297 0.90207 0.90219 0.93243 0.89034 0.88920 0.93194 0.89931 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.82 13.19 55.43 0.73 -24.08 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.65 29.54 -169.99 -5.02 15.62 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -1.02 -27.74 9.72 30.60 0.30 -27.44 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 70.57 5.02 -107.50 -0.54 70.03 16 10 O -1.01 -29.41 18.02 -57.17 -1.03 -30.44 16 11 O -1.01 -28.66 17.47 -57.17 -1.00 -29.66 16 12 N -1.14 -21.52 5.25 -10.62 -0.06 -21.58 16 13 C 0.14 2.20 4.28 -4.05 -0.02 2.18 16 14 C -0.06 -0.68 0.31 -154.31 -0.05 -0.73 16 15 C -0.08 -0.75 3.94 -27.88 -0.11 -0.86 16 16 C -0.03 -0.34 4.01 -104.32 -0.42 -0.76 16 17 C -0.17 -1.70 8.02 -39.44 -0.32 -2.01 16 18 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 19 N -0.49 -6.48 10.36 -13.25 -0.14 -6.62 16 20 C 0.10 1.28 11.18 -17.55 -0.20 1.09 16 21 C -0.17 -1.94 8.21 -39.44 -0.32 -2.26 16 22 C -0.15 -1.69 4.49 -26.58 -0.12 -1.81 16 23 C 0.06 0.57 6.46 37.20 0.24 0.81 16 24 O -0.38 -4.35 10.77 -35.23 -0.38 -4.72 16 25 C 0.06 0.57 6.57 37.20 0.24 0.82 16 26 C -0.15 -1.68 4.74 -26.59 -0.13 -1.81 16 27 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.40 6.76 6.47 -34.47 -0.22 6.54 16 29 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 30 H 0.06 0.99 6.59 -51.93 -0.34 0.65 16 31 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.08 0.65 4.98 -51.93 -0.26 0.39 16 33 H 0.13 0.97 7.04 -52.48 -0.37 0.60 16 34 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.08 0.88 6.06 -51.93 -0.31 0.56 16 38 H 0.08 0.99 6.83 -51.93 -0.35 0.64 16 39 H 0.05 0.39 5.62 -51.93 -0.29 0.10 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.40 6.69 -51.93 -0.35 0.06 16 43 H 0.08 1.08 6.81 -51.93 -0.35 0.72 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -36.48 357.15 -8.99 -45.47 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.76 Total: 8.92 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -1.19 Total: -28.33 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.54 Total: -52.28 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -2.41 Total: -64.83 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 70.57 SS G_CDS: -0.54 Total: 70.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.48 -8.99 -45.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.911 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds