Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46609 * 269.99866 * 3 2 1 5 5 H 1.48495 * 109.47085 * 29.99689 * 3 2 1 6 6 H 1.48495 * 109.46982 * 150.00116 * 3 2 1 7 7 C 1.37880 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99165 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00238 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40034 * 66.45925 * 9 7 2 11 11 O 1.42096 * 106.40029 * 293.53919 * 9 7 2 12 12 N 1.65597 * 107.21566 * 179.97438 * 9 7 2 13 13 C 1.46499 * 120.00007 * 64.72838 * 12 9 7 14 14 C 1.53001 * 109.47499 * 163.55736 * 13 12 9 15 15 C 1.53005 * 109.54070 * 303.19852 * 14 13 12 16 16 C 1.50707 * 109.46945 * 294.56341 * 15 14 13 17 17 C 1.38671 * 120.41640 * 89.95001 * 16 15 14 18 18 C 1.38627 * 118.42191 * 179.97438 * 17 16 15 19 19 C 1.38230 * 119.15678 * 0.02562 * 18 17 16 20 20 N 1.31852 * 120.76580 * 0.02562 * 19 18 17 21 21 C 1.31884 * 121.72393 * 359.69502 * 20 19 18 22 22 C 1.53177 * 109.54495 * 183.01792 * 14 13 12 23 23 C 1.53270 * 109.06589 * 297.03032 * 22 14 13 24 24 O 1.42903 * 109.46035 * 302.44426 * 23 22 14 25 25 C 1.42903 * 114.09836 * 61.16119 * 24 23 22 26 26 C 1.53097 * 109.41156 * 298.84138 * 25 24 23 27 27 H 0.97003 * 119.99677 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00616 * 244.99703 * 12 9 7 29 29 H 1.09005 * 109.47021 * 283.55791 * 13 12 9 30 30 H 1.09003 * 109.47261 * 43.55548 * 13 12 9 31 31 H 1.08993 * 109.47365 * 54.56168 * 15 14 13 32 32 H 1.09000 * 109.46779 * 174.56607 * 15 14 13 33 33 H 1.07997 * 120.79041 * 359.97438 * 17 16 15 34 34 H 1.07989 * 120.42201 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.61729 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.61726 * 180.31390 * 21 20 19 37 37 H 1.09004 * 109.52017 * 57.01998 * 22 14 13 38 38 H 1.08999 * 109.52022 * 177.20368 * 22 14 13 39 39 H 1.09001 * 109.46296 * 182.45290 * 23 22 14 40 40 H 1.09002 * 109.46958 * 62.44639 * 23 22 14 41 41 H 1.09003 * 109.48595 * 178.86615 * 25 24 23 42 42 H 1.08998 * 109.49408 * 58.82818 * 25 24 23 43 43 H 1.08997 * 109.52463 * 297.70226 * 26 25 24 44 44 H 1.08995 * 109.52406 * 177.51451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0019 10 8 0.4507 -2.7961 -1.2475 11 8 0.4518 -2.7944 1.2519 12 7 2.2481 -3.9354 0.0016 13 6 3.1440 -4.1047 1.1483 14 6 3.7817 -5.4945 1.0966 15 6 2.6842 -6.5601 1.0638 16 6 1.9179 -6.5321 2.3612 17 6 0.8015 -5.7212 2.4998 18 6 0.1274 -5.7280 3.7111 19 6 0.5875 -6.5368 4.7334 20 7 1.6535 -7.2944 4.5662 21 6 2.3162 -7.3173 3.4262 22 6 4.6602 -5.7015 2.3342 23 6 5.8015 -4.6786 2.3148 24 8 6.5500 -4.8233 1.1061 25 6 5.7895 -4.5950 -0.0820 26 6 4.6494 -5.6138 -0.1600 27 1 -0.4850 0.8401 0.0004 28 1 2.3164 -4.5329 -0.7595 29 1 3.9251 -3.3451 1.1143 30 1 2.5754 -3.9999 2.0723 31 1 2.0049 -6.3567 0.2362 32 1 3.1361 -7.5430 0.9299 33 1 0.4653 -5.0992 1.6835 34 1 -0.7461 -5.1094 3.8542 35 1 0.0682 -6.5475 5.6802 36 1 3.1823 -7.9546 3.3249 37 1 4.0603 -5.5641 3.2339 38 1 5.0747 -6.7096 2.3221 39 1 6.4558 -4.8482 3.1699 40 1 5.3877 -3.6716 2.3678 41 1 6.4350 -4.7045 -0.9535 42 1 5.3754 -3.5870 -0.0607 43 1 5.0637 -6.6200 -0.2224 44 1 4.0418 -5.4137 -1.0425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -113.833023 kcal Electronic energy + Delta-G solvation = -29416.840223 eV Core-core repulsion = 25460.028476 eV Total energy + Delta-G solvation = -3956.811747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73835 -39.43277 -36.43527 -35.27686 -34.04729 -33.30691 -33.04633 -32.25632 -31.32549 -31.00977 -27.62388 -26.20293 -25.60964 -23.83761 -23.55503 -22.98197 -21.42624 -19.15375 -18.67764 -17.57954 -16.85197 -16.51913 -16.14233 -16.07942 -15.93068 -15.55637 -15.13420 -14.99051 -14.61736 -14.34921 -14.04868 -13.87714 -13.66438 -13.32998 -13.25904 -12.84212 -12.73904 -12.34943 -12.10893 -12.05027 -11.90974 -11.42879 -11.32359 -11.30410 -11.26631 -11.13902 -10.65662 -10.53763 -10.40713 -10.36665 -10.26761 -10.09368 -9.64213 -9.37944 -9.30829 -9.26769 -9.05882 -8.76165 -8.52508 -6.76633 -5.38603 1.25095 1.50743 2.25623 3.02073 3.09477 3.15226 3.90391 3.94890 4.00824 4.45513 4.56459 4.57712 4.60740 4.68410 4.82861 4.96940 5.04087 5.09604 5.15245 5.20958 5.27451 5.30728 5.40095 5.60257 5.62054 5.64155 5.68072 5.72598 5.75472 5.87106 5.89497 5.92195 5.96521 6.04832 6.10438 6.16616 6.29084 6.40680 6.48971 6.55206 6.76545 6.89387 7.21120 7.25725 7.79542 7.90223 8.08953 8.83122 10.17439 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.005151 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.567344 B = 5434.947112 C = 6876.718724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.100 0.900 9 S 2.713 3.287 10 O -1.008 7.008 11 O -1.002 7.002 12 N -1.136 6.136 13 C 0.131 3.869 14 C -0.061 4.061 15 C -0.066 4.066 16 C -0.133 4.133 17 C -0.058 4.058 18 C -0.161 4.161 19 C 0.085 3.915 20 N -0.491 5.491 21 C 0.094 3.906 22 C -0.143 4.143 23 C 0.055 3.945 24 O -0.384 6.384 25 C 0.055 3.945 26 C -0.143 4.143 27 H 0.291 0.709 28 H 0.400 0.600 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -11.564 3.848 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.119 0.881 9 S 2.813 3.187 10 O -0.998 6.998 11 O -0.992 6.992 12 N -0.891 5.891 13 C 0.004 3.996 14 C -0.062 4.062 15 C -0.104 4.104 16 C -0.135 4.135 17 C -0.083 4.083 18 C -0.181 4.181 19 C -0.072 4.072 20 N -0.199 5.199 21 C -0.063 4.063 22 C -0.181 4.181 23 C -0.021 4.021 24 O -0.303 6.303 25 C -0.022 4.022 26 C -0.181 4.181 27 H 0.101 0.899 28 H 0.232 0.768 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.482 -12.069 4.726 14.966 hybrid contribution 0.326 1.740 -1.046 2.056 sum 7.808 -10.329 3.680 13.461 Atomic orbital electron populations 1.69887 1.06750 1.30751 1.40045 1.24724 0.94449 1.00790 0.88460 0.86199 0.80213 0.80175 0.79232 1.19160 1.19933 1.18667 1.30524 1.06011 1.11911 1.66962 0.88124 1.00453 0.72126 0.73276 0.72890 1.93384 1.73122 1.87634 1.45672 1.93349 1.72816 1.87354 1.45711 1.56054 1.55497 1.51069 1.26529 1.21239 0.93340 0.95224 0.89786 1.20776 0.94449 0.95345 0.95642 1.20601 0.96465 0.98741 0.94587 1.20822 0.96975 0.98243 0.97446 1.21874 0.93040 0.94890 0.98535 1.22231 1.01749 0.99923 0.94195 1.22692 0.92997 0.92659 0.98804 1.67638 1.07434 1.20683 1.24181 1.22553 0.98337 0.97159 0.88273 1.22324 0.97087 1.00596 0.98126 1.22676 0.93689 0.98387 0.87377 1.87895 1.36811 1.91693 1.13899 1.22658 0.93380 0.98396 0.87721 1.22219 0.97329 1.00617 0.97911 0.89877 0.76751 0.92109 0.90452 0.90054 0.90580 0.83893 0.84605 0.83182 0.83416 0.90400 0.90666 0.89030 0.92540 0.88990 0.92078 0.90868 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.14 13.19 55.43 0.73 -23.41 16 2 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 3 Si 0.92 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -1.02 -26.84 9.71 30.60 0.30 -26.55 16 8 H 0.10 2.42 7.81 -52.48 -0.41 2.01 16 9 S 2.71 66.59 5.02 -107.50 -0.54 66.05 16 10 O -1.01 -28.10 18.02 -57.17 -1.03 -29.13 16 11 O -1.00 -26.38 15.93 -57.17 -0.91 -27.29 16 12 N -1.14 -19.94 5.06 -10.61 -0.05 -20.00 16 13 C 0.13 2.03 4.07 -4.04 -0.02 2.01 16 14 C -0.06 -0.72 0.31 -154.32 -0.05 -0.76 16 15 C -0.07 -0.75 4.37 -27.88 -0.12 -0.87 16 16 C -0.13 -1.76 3.99 -104.48 -0.42 -2.17 16 17 C -0.06 -0.90 8.24 -39.28 -0.32 -1.23 16 18 C -0.16 -2.35 10.11 -39.44 -0.40 -2.75 16 19 C 0.08 1.13 11.18 -17.55 -0.20 0.93 16 20 N -0.49 -6.83 10.36 -13.25 -0.14 -6.97 16 21 C 0.09 1.18 9.13 -17.55 -0.16 1.02 16 22 C -0.14 -1.56 4.07 -26.50 -0.11 -1.66 16 23 C 0.06 0.63 6.57 37.30 0.25 0.88 16 24 O -0.38 -4.86 10.77 -35.23 -0.38 -5.24 16 25 C 0.06 0.64 6.57 37.21 0.24 0.88 16 26 C -0.14 -1.52 4.82 -26.59 -0.13 -1.65 16 27 H 0.29 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.40 6.00 6.52 -34.47 -0.22 5.77 16 29 H 0.06 0.94 5.02 -51.93 -0.26 0.68 16 30 H 0.08 1.33 6.09 -51.93 -0.32 1.01 16 31 H 0.08 0.96 6.84 -51.93 -0.36 0.61 16 32 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.14 2.55 6.29 -52.49 -0.33 2.22 16 34 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.15 1.49 8.05 -52.48 -0.42 1.07 16 37 H 0.08 0.90 6.41 -51.93 -0.33 0.57 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.69 6.67 -51.93 -0.35 0.34 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.81 6.71 -51.93 -0.35 0.46 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -33.98 355.85 -8.99 -42.97 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.78 Total: 10.95 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -1.23 Total: -28.40 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.54 Total: -50.38 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -2.32 Total: -61.65 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 66.59 SS G_CDS: -0.54 Total: 66.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.98 -8.99 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.863 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds