Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46609 * 269.99866 * 3 2 1 5 5 H 1.48495 * 109.47085 * 29.99689 * 3 2 1 6 6 H 1.48495 * 109.46982 * 150.00116 * 3 2 1 7 7 C 1.37880 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99165 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00238 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40034 * 66.45925 * 9 7 2 11 11 O 1.42096 * 106.40029 * 293.53919 * 9 7 2 12 12 N 1.65597 * 107.21566 * 179.97438 * 9 7 2 13 13 C 1.46499 * 120.00007 * 64.72838 * 12 9 7 14 14 C 1.53001 * 109.47499 * 163.55736 * 13 12 9 15 15 C 1.53005 * 109.54070 * 303.19852 * 14 13 12 16 16 C 1.50707 * 109.46945 * 294.56341 * 15 14 13 17 17 C 1.38671 * 120.41640 * 89.95001 * 16 15 14 18 18 C 1.38627 * 118.42191 * 179.97438 * 17 16 15 19 19 C 1.38230 * 119.15678 * 0.02562 * 18 17 16 20 20 N 1.31852 * 120.76580 * 0.02562 * 19 18 17 21 21 C 1.31884 * 121.72393 * 359.69502 * 20 19 18 22 22 C 1.53177 * 109.54495 * 183.01792 * 14 13 12 23 23 C 1.53270 * 109.06589 * 297.03032 * 22 14 13 24 24 O 1.42903 * 109.46035 * 302.44426 * 23 22 14 25 25 C 1.42903 * 114.09836 * 61.16119 * 24 23 22 26 26 C 1.53097 * 109.41156 * 298.84138 * 25 24 23 27 27 H 0.97003 * 119.99677 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00616 * 244.99703 * 12 9 7 29 29 H 1.09005 * 109.47021 * 283.55791 * 13 12 9 30 30 H 1.09003 * 109.47261 * 43.55548 * 13 12 9 31 31 H 1.08993 * 109.47365 * 54.56168 * 15 14 13 32 32 H 1.09000 * 109.46779 * 174.56607 * 15 14 13 33 33 H 1.07997 * 120.79041 * 359.97438 * 17 16 15 34 34 H 1.07989 * 120.42201 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.61729 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.61726 * 180.31390 * 21 20 19 37 37 H 1.09004 * 109.52017 * 57.01998 * 22 14 13 38 38 H 1.08999 * 109.52022 * 177.20368 * 22 14 13 39 39 H 1.09001 * 109.46296 * 182.45290 * 23 22 14 40 40 H 1.09002 * 109.46958 * 62.44639 * 23 22 14 41 41 H 1.09003 * 109.48595 * 178.86615 * 25 24 23 42 42 H 1.08998 * 109.49408 * 58.82818 * 25 24 23 43 43 H 1.08997 * 109.52463 * 297.70226 * 26 25 24 44 44 H 1.08995 * 109.52406 * 177.51451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0019 10 8 0.4507 -2.7961 -1.2475 11 8 0.4518 -2.7944 1.2519 12 7 2.2481 -3.9354 0.0016 13 6 3.1440 -4.1047 1.1483 14 6 3.7817 -5.4945 1.0966 15 6 2.6842 -6.5601 1.0638 16 6 1.9179 -6.5321 2.3612 17 6 0.8015 -5.7212 2.4998 18 6 0.1274 -5.7280 3.7111 19 6 0.5875 -6.5368 4.7334 20 7 1.6535 -7.2944 4.5662 21 6 2.3162 -7.3173 3.4262 22 6 4.6602 -5.7015 2.3342 23 6 5.8015 -4.6786 2.3148 24 8 6.5500 -4.8233 1.1061 25 6 5.7895 -4.5950 -0.0820 26 6 4.6494 -5.6138 -0.1600 27 1 -0.4850 0.8401 0.0004 28 1 2.3164 -4.5329 -0.7595 29 1 3.9251 -3.3451 1.1143 30 1 2.5754 -3.9999 2.0723 31 1 2.0049 -6.3567 0.2362 32 1 3.1361 -7.5430 0.9299 33 1 0.4653 -5.0992 1.6835 34 1 -0.7461 -5.1094 3.8542 35 1 0.0682 -6.5475 5.6802 36 1 3.1823 -7.9546 3.3249 37 1 4.0603 -5.5641 3.2339 38 1 5.0747 -6.7096 2.3221 39 1 6.4558 -4.8482 3.1699 40 1 5.3877 -3.6716 2.3678 41 1 6.4350 -4.7045 -0.9535 42 1 5.3754 -3.5870 -0.0607 43 1 5.0637 -6.6200 -0.2224 44 1 4.0418 -5.4137 -1.0425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193000921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -139.908110 kcal Electronic energy + Delta-G solvation = -29417.970924 eV Core-core repulsion = 25460.028476 eV Total energy + Delta-G solvation = -3957.942448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75004 -40.43359 -37.56621 -37.28384 -36.12249 -35.22111 -34.46809 -33.34309 -32.36934 -31.90613 -28.58978 -28.26287 -26.88324 -24.78441 -24.54994 -24.00912 -22.40844 -21.05483 -19.79728 -19.38421 -18.23324 -17.92677 -17.37097 -17.12132 -16.98850 -16.84990 -16.71473 -16.18323 -15.92261 -15.75394 -15.39030 -15.32828 -14.90073 -14.55095 -14.35169 -14.04969 -13.85443 -13.80712 -13.42453 -13.22955 -13.05101 -13.02275 -12.92453 -12.68441 -12.46694 -12.37723 -12.34328 -12.33389 -12.14982 -11.83430 -11.38207 -11.27341 -11.12048 -11.01500 -10.69657 -10.43130 -10.30827 -10.07622 -9.75468 -8.77663 -7.49473 0.21647 0.36269 0.38704 1.30615 1.31341 1.46422 2.17618 2.56032 2.89541 2.99913 3.03949 3.51309 3.60638 3.66565 3.72902 3.78244 4.04805 4.07195 4.10612 4.16956 4.18903 4.24778 4.38362 4.38894 4.53390 4.58782 4.63607 4.70773 4.78213 4.79698 4.85855 4.90464 4.93366 5.03759 5.05416 5.12555 5.19325 5.25090 5.32289 5.34331 5.39927 5.52016 5.84085 5.87149 6.31510 6.39107 6.77348 7.04765 8.18090 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.005151 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.567344 B = 5434.947112 C = 6876.718724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.249 1.249 7 C -1.043 5.043 8 H 0.116 0.884 9 S 2.723 3.277 10 O -1.048 7.048 11 O -1.029 7.029 12 N -1.115 6.115 13 C 0.128 3.872 14 C -0.052 4.052 15 C -0.066 4.066 16 C -0.129 4.129 17 C -0.085 4.085 18 C -0.180 4.180 19 C 0.086 3.914 20 N -0.502 5.502 21 C 0.100 3.900 22 C -0.136 4.136 23 C 0.051 3.949 24 O -0.393 6.393 25 C 0.050 3.950 26 C -0.139 4.139 27 H 0.298 0.702 28 H 0.414 0.586 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.109 0.891 42 H 0.042 0.958 43 H 0.098 0.902 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -12.943 4.163 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.173 1.173 7 C -1.176 5.176 8 H 0.134 0.866 9 S 2.823 3.177 10 O -1.038 7.038 11 O -1.018 7.018 12 N -0.875 5.875 13 C 0.002 3.998 14 C -0.054 4.054 15 C -0.104 4.104 16 C -0.131 4.131 17 C -0.111 4.111 18 C -0.199 4.199 19 C -0.070 4.070 20 N -0.210 5.210 21 C -0.057 4.057 22 C -0.175 4.175 23 C -0.025 4.025 24 O -0.312 6.312 25 C -0.026 4.026 26 C -0.177 4.177 27 H 0.108 0.892 28 H 0.250 0.750 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.193 0.807 36 H 0.199 0.801 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.058 0.942 41 H 0.127 0.873 42 H 0.060 0.940 43 H 0.117 0.883 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.220 -13.462 5.032 17.635 hybrid contribution -0.503 2.101 -1.118 2.433 sum 9.717 -11.361 3.913 15.453 Atomic orbital electron populations 1.69978 1.08624 1.32202 1.41547 1.25918 0.95311 1.05150 0.87643 0.85237 0.79248 0.75365 0.80071 1.17883 1.18746 1.17258 1.30953 1.07034 1.13064 1.66538 0.86623 0.99818 0.72543 0.73756 0.71611 1.93319 1.74894 1.88421 1.47213 1.93312 1.74132 1.87917 1.46461 1.55355 1.54770 1.49496 1.27920 1.21404 0.92455 0.98212 0.87764 1.20734 0.94714 0.92673 0.97263 1.20690 0.96072 1.00349 0.93293 1.20955 0.96062 0.97449 0.98601 1.21830 0.94958 0.96052 0.98290 1.22326 1.02114 1.00841 0.94655 1.23025 0.92903 0.91788 0.99248 1.67726 1.07644 1.20832 1.24843 1.23038 0.98653 0.96641 0.87342 1.22291 0.96429 1.01781 0.96952 1.22770 0.94242 0.97790 0.87738 1.87889 1.37331 1.91628 1.14305 1.22751 0.94029 0.97703 0.88142 1.22230 0.96718 1.01731 0.97008 0.89205 0.75002 0.92234 0.92510 0.90883 0.86978 0.86807 0.85041 0.80664 0.80131 0.91197 0.88077 0.87245 0.94152 0.87270 0.93996 0.88323 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.47 13.19 21.45 0.28 -52.19 16 2 C 0.07 3.99 5.46 84.66 0.46 4.45 16 3 Si 0.98 40.86 29.54 68.60 2.03 42.89 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 7 C -1.04 -55.85 9.71 67.73 0.66 -55.20 16 8 H 0.12 5.60 7.81 -2.91 -0.02 5.58 16 9 S 2.72 138.71 5.02 -56.49 -0.28 138.42 16 10 O -1.05 -60.76 18.02 -128.00 -2.31 -63.07 16 11 O -1.03 -56.96 15.93 -128.00 -2.04 -59.00 16 12 N -1.11 -39.79 5.06 -187.48 -0.95 -40.74 16 13 C 0.13 3.96 4.07 86.38 0.35 4.31 16 14 C -0.05 -1.12 0.31 -52.06 -0.02 -1.14 16 15 C -0.07 -1.35 4.37 29.85 0.13 -1.22 16 16 C -0.13 -3.24 3.99 -19.77 -0.08 -3.32 16 17 C -0.09 -2.75 8.24 22.47 0.19 -2.57 16 18 C -0.18 -5.42 10.11 22.36 0.23 -5.19 16 19 C 0.09 2.23 11.18 84.69 0.95 3.17 16 20 N -0.50 -12.98 10.36 -195.85 -2.03 -15.01 16 21 C 0.10 2.25 9.13 84.67 0.77 3.03 16 22 C -0.14 -2.57 4.07 30.74 0.13 -2.44 16 23 C 0.05 1.06 6.57 72.07 0.47 1.53 16 24 O -0.39 -8.90 10.77 -148.98 -1.60 -10.51 16 25 C 0.05 1.05 6.57 72.01 0.47 1.52 16 26 C -0.14 -2.54 4.82 30.69 0.15 -2.39 16 27 H 0.30 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.41 12.41 6.52 -96.75 -0.63 11.78 16 29 H 0.06 1.86 5.02 -2.38 -0.01 1.85 16 30 H 0.06 2.01 6.09 -2.39 -0.01 2.00 16 31 H 0.07 1.63 6.84 -2.39 -0.02 1.62 16 32 H 0.11 1.54 8.09 -2.39 -0.02 1.52 16 33 H 0.11 4.34 6.29 -2.91 -0.02 4.32 16 34 H 0.13 3.90 8.06 -2.92 -0.02 3.88 16 35 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.18 2.80 8.05 -2.91 -0.02 2.78 16 37 H 0.07 1.46 6.41 -2.38 -0.02 1.45 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.04 0.95 6.67 -2.39 -0.02 0.93 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.03 6.53 -2.39 -0.02 1.01 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.46 6.71 -2.39 -0.02 1.44 16 Total: -1.00 -75.96 355.85 -1.64 -77.59 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.41 Total: 37.07 kcal Atomic # 6 Polarization: -60.32 SS G_CDS: 4.86 Total: -55.46 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -2.69 Total: -107.94 kcal Atomic # 8 Polarization: -126.63 SS G_CDS: -5.95 Total: -132.58 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 138.71 SS G_CDS: -0.28 Total: 138.42 kcal Total: -75.96 -1.64 -77.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.313 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds