Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00265 * 2 1 4 4 H 1.48506 * 109.47037 * 270.00347 * 3 2 1 5 5 H 1.48504 * 109.47101 * 30.00104 * 3 2 1 6 6 H 1.48494 * 109.47137 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99839 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00385 * 179.97438 * 7 2 1 10 10 O 1.42106 * 106.39872 * 293.54093 * 9 7 2 11 11 O 1.42104 * 106.40392 * 66.45455 * 9 7 2 12 12 N 1.65593 * 107.22206 * 180.02562 * 9 7 2 13 13 C 1.46498 * 120.00424 * 64.99561 * 12 9 7 14 14 C 1.52995 * 109.47605 * 164.00267 * 13 12 9 15 15 C 1.53007 * 109.54459 * 304.63072 * 14 13 12 16 16 C 1.50704 * 109.46548 * 305.59008 * 15 14 13 17 17 C 1.38233 * 119.61393 * 121.54914 * 16 15 14 18 18 C 1.38633 * 119.15693 * 179.97438 * 17 16 15 19 19 C 1.38670 * 118.41945 * 359.97438 * 18 17 16 20 20 C 1.38182 * 119.16901 * 0.02562 * 19 18 17 21 21 N 1.31850 * 119.62251 * 301.27005 * 16 15 14 22 22 C 1.53181 * 109.54690 * 184.45151 * 14 13 12 23 23 C 1.53276 * 109.06186 * 297.02896 * 22 14 13 24 24 O 1.42904 * 109.46293 * 302.44407 * 23 22 14 25 25 C 1.42906 * 114.09464 * 61.15831 * 24 23 22 26 26 C 1.53089 * 109.41594 * 298.83929 * 25 24 23 27 27 H 0.97005 * 119.99801 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00117 * 244.99807 * 12 9 7 29 29 H 1.09002 * 109.47224 * 284.00762 * 13 12 9 30 30 H 1.09004 * 109.46656 * 44.00217 * 13 12 9 31 31 H 1.08998 * 109.47062 * 65.58207 * 15 14 13 32 32 H 1.08991 * 109.47659 * 185.59239 * 15 14 13 33 33 H 1.07995 * 120.42409 * 0.02562 * 17 16 15 34 34 H 1.07997 * 120.78749 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.41522 * 180.02562 * 19 18 17 36 36 H 1.07995 * 119.62148 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.52039 * 57.01949 * 22 14 13 38 38 H 1.08999 * 109.52192 * 177.20242 * 22 14 13 39 39 H 1.08996 * 109.45635 * 182.44333 * 23 22 14 40 40 H 1.09001 * 109.46743 * 62.44990 * 23 22 14 41 41 H 1.09001 * 109.47594 * 178.86333 * 25 24 23 42 42 H 1.08995 * 109.49158 * 58.83310 * 25 24 23 43 43 H 1.08998 * 109.52739 * 297.70825 * 26 25 24 44 44 H 1.09003 * 109.57365 * 177.54520 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1672 -0.6494 -1.2510 11 8 4.1683 -0.6499 1.2484 12 7 4.2566 -2.7759 -0.0025 13 6 3.9608 -3.6336 -1.1527 14 6 4.8375 -4.8861 -1.0939 15 6 6.3096 -4.4771 -1.0108 16 6 6.6394 -3.5533 -2.1549 17 6 7.1254 -2.2863 -1.8915 18 6 7.4262 -1.4445 -2.9511 19 6 7.2266 -1.9108 -4.2417 20 6 6.7375 -3.1897 -4.4276 21 7 6.4664 -3.9648 -3.3955 22 6 4.6104 -5.7302 -2.3518 23 6 3.1515 -6.1995 -2.3830 24 8 2.8630 -6.9369 -1.1934 25 6 3.0139 -6.1832 0.0113 26 6 4.4656 -5.7144 0.1398 27 1 -0.4850 0.8401 0.0004 28 1 4.7397 -3.1346 0.7584 29 1 2.9104 -3.9238 -1.1289 30 1 4.1665 -3.0891 -2.0743 31 1 6.4916 -3.9648 -0.0661 32 1 6.9375 -5.3660 -1.0691 33 1 7.2696 -1.9566 -0.8733 34 1 7.8077 -0.4495 -2.7756 35 1 7.4506 -1.2822 -5.0910 36 1 6.5789 -3.5602 -5.4295 37 1 4.8210 -5.1294 -3.2364 38 1 5.2712 -6.5968 -2.3331 39 1 2.9937 -6.8367 -3.2531 40 1 2.4925 -5.3333 -2.4426 41 1 2.7570 -6.8089 0.8660 42 1 2.3532 -5.3168 -0.0166 43 1 5.1234 -6.5808 0.2087 44 1 4.5738 -5.1027 1.0355 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -117.826463 kcal Electronic energy + Delta-G solvation = -29631.881255 eV Core-core repulsion = 25674.896340 eV Total energy + Delta-G solvation = -3956.984916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70741 -40.36020 -37.69981 -37.33781 -36.47096 -35.21560 -34.37726 -33.16871 -32.61737 -31.89856 -28.74122 -28.58619 -26.91821 -24.71808 -24.64376 -23.92655 -22.36070 -21.12588 -19.82682 -19.48872 -18.59520 -17.76004 -17.41141 -17.25275 -16.89396 -16.77979 -16.75772 -16.36566 -15.84920 -15.77572 -15.40964 -15.35054 -15.08610 -14.98180 -14.42407 -14.22071 -14.09837 -13.70351 -13.57185 -13.41811 -13.06491 -12.95845 -12.83720 -12.79613 -12.66820 -12.54760 -12.44997 -12.11404 -12.06195 -11.75418 -11.38081 -11.36480 -11.25034 -11.13742 -10.66089 -10.53132 -10.14801 -10.00190 -9.72413 -8.98884 -7.54465 0.16048 0.29578 0.45788 1.01443 1.10562 1.17302 1.85434 2.39663 2.58006 2.92983 3.05107 3.28910 3.39049 3.64719 3.67191 3.83458 4.02656 4.10272 4.16801 4.19036 4.26273 4.31829 4.34930 4.38798 4.43898 4.54299 4.67944 4.73115 4.74805 4.79705 4.85424 4.88080 4.95548 5.05078 5.08683 5.13845 5.25207 5.33015 5.35785 5.38837 5.43423 5.50875 5.93286 5.97959 6.29904 6.33818 6.51870 7.12187 8.18993 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.005874 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.797779 B = 4765.394330 C = 6397.087525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.107 3.893 3 Si 0.825 3.175 4 H -0.239 1.239 5 H -0.221 1.221 6 H -0.227 1.227 7 C -1.042 5.042 8 H 0.102 0.898 9 S 2.701 3.299 10 O -1.020 7.020 11 O -1.030 7.030 12 N -1.102 6.102 13 C 0.135 3.865 14 C -0.048 4.048 15 C -0.057 4.057 16 C 0.124 3.876 17 C -0.182 4.182 18 C -0.083 4.083 19 C -0.182 4.182 20 C 0.086 3.914 21 N -0.488 5.488 22 C -0.136 4.136 23 C 0.049 3.951 24 O -0.396 6.396 25 C 0.050 3.950 26 C -0.140 4.140 27 H 0.290 0.710 28 H 0.419 0.581 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.035 0.965 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.096 0.904 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.788 -10.558 -5.385 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.109 4.109 3 Si 0.642 3.358 4 H -0.163 1.163 5 H -0.143 1.143 6 H -0.150 1.150 7 C -1.174 5.174 8 H 0.120 0.880 9 S 2.800 3.200 10 O -1.010 7.010 11 O -1.020 7.020 12 N -0.864 5.864 13 C 0.008 3.992 14 C -0.050 4.050 15 C -0.095 4.095 16 C -0.013 4.013 17 C -0.202 4.202 18 C -0.109 4.109 19 C -0.202 4.202 20 C -0.070 4.070 21 N -0.198 5.198 22 C -0.174 4.174 23 C -0.027 4.027 24 O -0.315 6.315 25 C -0.026 4.026 26 C -0.178 4.178 27 H 0.101 0.899 28 H 0.255 0.745 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.198 0.802 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.054 0.946 41 H 0.127 0.873 42 H 0.056 0.944 43 H 0.114 0.886 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.704 -10.679 -5.684 18.280 hybrid contribution -0.470 1.842 0.515 1.969 sum 13.234 -8.838 -5.168 16.732 Atomic orbital electron populations 1.70023 1.07515 1.30404 1.40549 1.25179 0.95619 1.01480 0.88628 0.87490 0.82935 0.82826 0.82548 1.16265 1.14334 1.14976 1.31075 1.18604 1.01458 1.66248 0.87975 1.00427 0.75424 0.71757 0.72417 1.93388 1.84417 1.77343 1.45837 1.93439 1.85143 1.77518 1.45924 1.54945 1.73593 1.29889 1.27975 1.21340 0.98929 0.91576 0.87321 1.20668 0.93888 0.93052 0.97408 1.20678 0.95331 0.98793 0.94693 1.21299 0.93861 0.93033 0.93073 1.22117 1.01809 0.95518 1.00723 1.21862 0.95830 0.99884 0.93293 1.22388 1.01479 0.98156 0.98163 1.23238 0.94020 0.90971 0.98804 1.67468 1.16026 1.37131 0.99215 1.22394 0.96387 1.00231 0.98419 1.22835 0.95653 0.96242 0.87969 1.87867 1.89703 1.39325 1.14611 1.22733 0.95984 0.96155 0.87739 1.22244 0.97515 1.00640 0.97409 0.89913 0.74474 0.92864 0.92660 0.89312 0.87754 0.85421 0.84101 0.82621 0.80222 0.88241 0.89673 0.87424 0.94635 0.87282 0.94437 0.88580 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.92 13.96 21.45 0.30 -49.62 16 2 C 0.11 6.21 5.47 84.65 0.46 6.67 16 3 Si 0.83 41.17 26.54 68.60 1.82 42.99 16 4 H -0.24 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.22 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.23 -11.56 5.61 99.48 0.56 -11.00 16 7 C -1.04 -58.71 10.26 67.73 0.69 -58.02 16 8 H 0.10 5.93 8.06 -2.91 -0.02 5.90 16 9 S 2.70 130.37 4.24 -56.49 -0.24 130.13 16 10 O -1.02 -52.04 16.29 -128.00 -2.08 -54.12 16 11 O -1.03 -53.35 16.02 -128.00 -2.05 -55.40 16 12 N -1.10 -39.27 5.36 -187.49 -1.00 -40.27 16 13 C 0.13 4.45 4.12 86.38 0.36 4.80 16 14 C -0.05 -1.17 0.31 -52.06 -0.02 -1.18 16 15 C -0.06 -1.27 4.42 29.85 0.13 -1.13 16 16 C 0.12 3.32 4.70 42.56 0.20 3.52 16 17 C -0.18 -5.17 9.71 22.36 0.22 -4.95 16 18 C -0.08 -2.20 10.18 22.47 0.23 -1.97 16 19 C -0.18 -4.19 10.11 22.36 0.23 -3.96 16 20 C 0.09 1.98 11.18 84.67 0.95 2.92 16 21 N -0.49 -12.62 7.28 -183.88 -1.34 -13.96 16 22 C -0.14 -3.15 4.46 30.75 0.14 -3.02 16 23 C 0.05 1.22 6.57 72.07 0.47 1.70 16 24 O -0.40 -10.58 10.77 -148.98 -1.60 -12.18 16 25 C 0.05 1.24 6.57 72.01 0.47 1.71 16 26 C -0.14 -2.94 4.82 30.68 0.15 -2.79 16 27 H 0.29 15.28 8.31 -92.70 -0.77 14.51 16 28 H 0.42 12.14 6.53 -96.74 -0.63 11.51 16 29 H 0.05 1.88 5.03 -2.39 -0.01 1.87 16 30 H 0.06 2.06 6.84 -2.39 -0.02 2.04 16 31 H 0.09 1.79 6.85 -2.39 -0.02 1.77 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.13 3.45 7.94 -2.91 -0.02 3.43 16 34 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.10 2.49 5.55 -2.39 -0.01 2.48 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.00 6.71 -2.39 -0.02 0.98 16 41 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.04 1.09 6.50 -2.39 -0.02 1.07 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.64 6.82 -2.39 -0.02 1.62 16 Total: -1.00 -72.25 353.16 -1.27 -73.52 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.25 Total: 34.61 kcal Atomic # 6 Polarization: -60.38 SS G_CDS: 4.68 Total: -55.70 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -2.04 Total: -103.85 kcal Atomic # 8 Polarization: -115.97 SS G_CDS: -5.74 Total: -121.71 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.82 Total: 42.99 kcal Atomic # 16 Polarization: 130.37 SS G_CDS: -0.24 Total: 130.13 kcal Total: -72.25 -1.27 -73.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.304 kcal (2) G-P(sol) polarization free energy of solvation -72.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds