Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86809 * 119.99638 * 2 1 4 4 H 1.48498 * 109.46817 * 267.47871 * 3 2 1 5 5 H 1.48493 * 109.46833 * 27.47803 * 3 2 1 6 6 H 1.48498 * 109.46843 * 147.48052 * 3 2 1 7 7 C 1.40226 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 0.37844 * 7 2 1 9 9 C 1.40785 * 120.00456 * 180.37722 * 7 2 1 10 10 N 1.33994 * 120.28536 * 335.13630 * 9 7 2 11 11 C 1.31567 * 119.89861 * 180.02562 * 10 9 7 12 12 C 1.39272 * 120.50460 * 359.97438 * 11 10 9 13 13 N 1.31950 * 120.58910 * 0.02562 * 12 11 10 14 14 C 1.32891 * 120.07861 * 359.97438 * 13 12 11 15 15 C 1.47735 * 120.24849 * 179.97438 * 14 13 12 16 16 C 1.40096 * 120.47036 * 315.56789 * 15 14 13 17 17 C 1.38229 * 118.35757 * 179.73338 * 16 15 14 18 18 C 1.39492 * 119.21111 * 0.56230 * 17 16 15 19 19 C 1.48081 * 119.55762 * 179.68035 * 18 17 16 20 20 O 1.21528 * 120.00065 * 21.02200 * 19 18 17 21 21 N 1.34779 * 119.99949 * 201.02446 * 19 18 17 22 22 C 1.47147 * 120.98271 * 185.03391 * 21 19 18 23 23 C 1.53708 * 108.16063 * 129.43130 * 22 21 19 24 24 O 1.42962 * 109.14949 * 52.54078 * 23 22 21 25 25 C 1.42958 * 114.16300 * 297.28903 * 24 23 22 26 26 C 1.47149 * 120.98032 * 5.31702 * 21 19 18 27 27 N 1.32827 * 120.88303 * 359.69696 * 18 17 16 28 28 C 1.31296 * 121.79899 * 0.02562 * 27 18 17 29 29 H 0.96996 * 120.00367 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.74805 * 180.02562 * 11 10 9 31 31 H 1.07993 * 119.70129 * 179.97438 * 12 11 10 32 32 H 1.08000 * 120.81857 * 359.97122 * 16 15 14 33 33 H 1.08000 * 120.39468 * 180.25786 * 17 16 15 34 34 H 1.09005 * 109.68372 * 249.21092 * 22 21 19 35 35 H 1.09003 * 109.68111 * 9.76276 * 22 21 19 36 36 H 1.08999 * 109.66192 * 292.57213 * 23 22 21 37 37 H 1.09011 * 109.48558 * 172.39954 * 23 22 21 38 38 H 1.09001 * 109.51444 * 302.65098 * 25 24 23 39 39 H 1.08997 * 109.55551 * 182.52956 * 25 24 23 40 40 H 1.08995 * 109.68488 * 350.23480 * 26 21 19 41 41 H 1.09004 * 109.68145 * 110.75248 * 26 21 19 42 42 H 1.08011 * 119.65263 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6179 0.0000 4 1 2.5411 2.0157 -1.3987 5 1 1.4121 2.6675 0.6460 6 1 3.5102 1.4563 0.7527 7 6 2.0077 -1.2143 0.0005 8 1 1.4677 -2.1497 -0.0052 9 6 3.4155 -1.2143 0.0086 10 7 4.0940 -0.1631 -0.4711 11 6 5.4096 -0.1714 -0.4603 12 6 6.1055 -1.2659 0.0471 13 7 5.4572 -2.3114 0.5242 14 6 4.1284 -2.3277 0.5247 15 6 3.3987 -3.4965 1.0576 16 6 3.8016 -4.7969 0.7266 17 6 3.0909 -5.8587 1.2541 18 6 1.9980 -5.6021 2.0820 19 6 1.2269 -6.7338 2.6456 20 8 1.7325 -7.8363 2.7199 21 7 -0.0357 -6.5409 3.0759 22 6 -0.7831 -7.6210 3.7394 23 6 -1.3639 -7.0666 5.0501 24 8 -2.0934 -5.8694 4.7704 25 6 -1.2960 -4.8091 4.2380 26 6 -0.7096 -5.2460 2.8907 27 7 1.6395 -4.3563 2.3714 28 6 2.2911 -3.3206 1.8954 29 1 -0.4850 0.8400 0.0004 30 1 5.9540 0.6774 -0.8472 31 1 7.1854 -1.2591 0.0492 32 1 4.6488 -4.9655 0.0784 33 1 3.3754 -6.8748 1.0240 34 1 -1.5910 -7.9603 3.0911 35 1 -0.1121 -8.4522 3.9563 36 1 -0.5541 -6.8455 5.7455 37 1 -2.0323 -7.8053 5.4927 38 1 -0.4859 -4.5797 4.9304 39 1 -1.9149 -3.9232 4.0956 40 1 0.0099 -4.5037 2.5454 41 1 -1.5099 -5.3502 2.1579 42 1 1.9696 -2.3222 2.1536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242652494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = 12.465228 kcal Electronic energy + Delta-G solvation = -29133.182979 eV Core-core repulsion = 25078.696735 eV Total energy + Delta-G solvation = -4054.486244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72413 -39.80097 -38.95824 -37.97152 -34.78002 -34.43311 -33.53072 -32.39081 -31.79110 -31.33423 -29.71022 -27.85075 -26.60212 -25.02161 -24.07557 -23.11656 -22.67227 -22.02403 -21.32303 -19.71906 -18.17835 -17.57441 -16.87541 -16.61152 -16.40664 -15.95042 -15.84449 -15.48959 -15.14449 -15.01541 -14.87950 -14.47872 -14.34353 -13.96861 -13.75012 -13.59822 -13.16275 -13.01560 -12.87797 -12.73267 -12.26122 -11.98983 -11.85806 -11.57518 -11.39628 -11.35620 -11.29364 -10.80233 -10.74980 -10.23151 -10.21528 -10.09805 -9.74048 -9.55010 -9.33789 -8.95437 -8.78561 -8.51876 -8.10944 -7.76600 -7.30663 -5.12056 0.81778 1.59123 1.94990 2.34291 2.90826 2.93050 3.17303 3.20054 3.29423 3.80143 3.99386 4.08879 4.24033 4.29385 4.71038 4.87396 4.95721 4.99320 5.00095 5.15566 5.22285 5.31972 5.33220 5.40530 5.41482 5.49889 5.53522 5.62742 5.74795 5.76640 5.88435 5.93934 6.08664 6.14114 6.27080 6.36151 6.45815 6.58734 6.61074 6.78282 7.02820 7.13165 7.18451 7.35940 7.65536 7.89620 7.96331 8.07660 8.25920 8.57831 9.03142 9.59464 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003660 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.072168 B = 7648.813455 C = 9319.695090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.079 3.921 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.317 1.317 6 H -0.253 1.253 7 C -0.384 4.384 8 H 0.108 0.892 9 C 0.208 3.792 10 N -0.523 5.523 11 C 0.110 3.890 12 C -0.101 4.101 13 N -0.400 5.400 14 C -0.016 4.016 15 C 0.004 3.996 16 C -0.075 4.075 17 C -0.109 4.109 18 C 0.047 3.953 19 C 0.583 3.417 20 O -0.543 6.543 21 N -0.599 5.599 22 C 0.076 3.924 23 C 0.050 3.950 24 O -0.386 6.386 25 C 0.053 3.947 26 C 0.029 3.971 27 N -0.454 5.454 28 C 0.121 3.879 29 H 0.296 0.704 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.168 0.832 41 H 0.064 0.936 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 -5.710 4.910 7.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.248 1.248 6 H -0.179 1.179 7 C -0.414 4.414 8 H 0.126 0.874 9 C 0.084 3.916 10 N -0.243 5.243 11 C -0.058 4.058 12 C -0.262 4.262 13 N -0.112 5.112 14 C -0.163 4.163 15 C 0.000 4.000 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.089 4.089 19 C 0.371 3.629 20 O -0.420 6.420 21 N -0.332 5.332 22 C -0.047 4.047 23 C -0.027 4.027 24 O -0.305 6.305 25 C -0.024 4.024 26 C -0.094 4.094 27 N -0.165 5.165 28 C -0.040 4.040 29 H 0.107 0.893 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.183 0.817 41 H 0.083 0.917 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.217 -6.161 5.519 8.563 hybrid contribution 1.236 0.621 -0.845 1.621 sum -0.981 -5.540 4.673 7.314 Atomic orbital electron populations 1.69520 1.08483 1.31891 1.29502 1.26442 0.95094 1.03436 0.89696 0.84931 0.77858 0.75676 0.80238 1.19637 1.24802 1.17873 1.19616 0.88263 0.96062 1.37471 0.87383 1.19213 0.94611 0.87635 0.90122 1.68089 1.07924 1.27327 1.20995 1.23300 0.91400 0.97397 0.93735 1.22601 0.99504 0.93241 1.10854 1.67718 1.08308 1.25404 1.09738 1.19790 0.89448 0.96850 1.10209 1.19470 0.94280 0.92184 0.94064 1.21692 0.98967 0.91138 0.98349 1.21818 0.94373 1.00527 0.96252 1.20796 0.96563 0.91192 1.00356 1.17997 0.80769 0.87106 0.77030 1.90734 1.69842 1.24790 1.56658 1.47906 1.13091 1.13972 1.58253 1.22383 0.96661 0.91127 0.94548 1.23000 0.96613 0.87787 0.95328 1.87928 1.35931 1.22639 1.83964 1.22954 0.95382 0.89961 0.94080 1.23767 1.00468 0.87186 0.97946 1.67062 1.27931 0.98634 1.22868 1.23276 0.91009 0.97805 0.91927 0.89289 0.84169 0.84239 0.84385 0.84245 0.90743 0.88367 0.92757 0.87979 0.92494 0.87613 0.81688 0.91739 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.66 13.92 55.56 0.77 -16.89 16 2 C 0.08 1.81 5.52 -17.31 -0.10 1.71 16 3 Si 0.98 20.61 25.85 -169.99 -4.39 16.22 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.32 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.25 -5.50 6.15 56.52 0.35 -5.15 16 7 C -0.38 -8.83 7.55 -37.87 -0.29 -9.11 16 8 H 0.11 2.54 6.44 -52.48 -0.34 2.20 16 9 C 0.21 4.69 6.09 -84.55 -0.51 4.18 16 10 N -0.52 -11.59 5.18 -10.71 -0.06 -11.64 16 11 C 0.11 2.11 11.22 -17.28 -0.19 1.91 16 12 C -0.10 -1.89 11.22 -17.12 -0.19 -2.08 16 13 N -0.40 -8.28 10.32 -8.98 -0.09 -8.37 16 14 C -0.02 -0.35 6.43 -82.12 -0.53 -0.87 16 15 C 0.00 0.07 5.25 -104.66 -0.55 -0.48 16 16 C -0.08 -1.29 9.83 -38.89 -0.38 -1.67 16 17 C -0.11 -1.78 9.60 -39.12 -0.38 -2.16 16 18 C 0.05 0.80 6.48 -82.93 -0.54 0.27 16 19 C 0.58 9.86 7.61 -12.22 -0.09 9.77 16 20 O -0.54 -10.08 16.00 5.34 0.09 -10.00 16 21 N -0.60 -8.87 3.01 -173.05 -0.52 -9.39 16 22 C 0.08 0.92 6.65 -3.32 -0.02 0.90 16 23 C 0.05 0.55 7.00 37.53 0.26 0.81 16 24 O -0.39 -5.01 10.74 -35.23 -0.38 -5.38 16 25 C 0.05 0.68 6.98 37.31 0.26 0.94 16 26 C 0.03 0.40 6.40 -3.54 -0.02 0.38 16 27 N -0.45 -7.81 6.40 -9.44 -0.06 -7.87 16 28 C 0.12 2.21 8.96 -17.12 -0.15 2.06 16 29 H 0.30 6.17 8.29 -40.82 -0.34 5.83 16 30 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.14 2.06 7.77 -52.49 -0.41 1.66 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.20 7.12 -51.93 -0.37 0.83 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.17 2.59 3.78 -83.51 -0.32 2.28 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.18 3.28 6.80 -52.48 -0.36 2.92 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -27.10 347.79 -7.61 -34.71 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.78 Total: 6.84 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -3.42 Total: 6.54 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.04 Total: -54.17 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.29 Total: -15.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.39 Total: 16.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.10 -7.61 -34.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242652494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.176 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds