Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86809 * 119.99638 * 2 1 4 4 H 1.48498 * 109.46817 * 267.47871 * 3 2 1 5 5 H 1.48493 * 109.46833 * 27.47803 * 3 2 1 6 6 H 1.48498 * 109.46843 * 147.48052 * 3 2 1 7 7 C 1.40226 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 0.37844 * 7 2 1 9 9 C 1.40785 * 120.00456 * 180.37722 * 7 2 1 10 10 N 1.33994 * 120.28536 * 335.13630 * 9 7 2 11 11 C 1.31567 * 119.89861 * 180.02562 * 10 9 7 12 12 C 1.39272 * 120.50460 * 359.97438 * 11 10 9 13 13 N 1.31950 * 120.58910 * 0.02562 * 12 11 10 14 14 C 1.32891 * 120.07861 * 359.97438 * 13 12 11 15 15 C 1.47735 * 120.24849 * 179.97438 * 14 13 12 16 16 C 1.40096 * 120.47036 * 315.56789 * 15 14 13 17 17 C 1.38229 * 118.35757 * 179.73338 * 16 15 14 18 18 C 1.39492 * 119.21111 * 0.56230 * 17 16 15 19 19 C 1.48081 * 119.55762 * 179.68035 * 18 17 16 20 20 O 1.21528 * 120.00065 * 21.02200 * 19 18 17 21 21 N 1.34779 * 119.99949 * 201.02446 * 19 18 17 22 22 C 1.47147 * 120.98271 * 185.03391 * 21 19 18 23 23 C 1.53708 * 108.16063 * 129.43130 * 22 21 19 24 24 O 1.42962 * 109.14949 * 52.54078 * 23 22 21 25 25 C 1.42958 * 114.16300 * 297.28903 * 24 23 22 26 26 C 1.47149 * 120.98032 * 5.31702 * 21 19 18 27 27 N 1.32827 * 120.88303 * 359.69696 * 18 17 16 28 28 C 1.31296 * 121.79899 * 0.02562 * 27 18 17 29 29 H 0.96996 * 120.00367 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.74805 * 180.02562 * 11 10 9 31 31 H 1.07993 * 119.70129 * 179.97438 * 12 11 10 32 32 H 1.08000 * 120.81857 * 359.97122 * 16 15 14 33 33 H 1.08000 * 120.39468 * 180.25786 * 17 16 15 34 34 H 1.09005 * 109.68372 * 249.21092 * 22 21 19 35 35 H 1.09003 * 109.68111 * 9.76276 * 22 21 19 36 36 H 1.08999 * 109.66192 * 292.57213 * 23 22 21 37 37 H 1.09011 * 109.48558 * 172.39954 * 23 22 21 38 38 H 1.09001 * 109.51444 * 302.65098 * 25 24 23 39 39 H 1.08997 * 109.55551 * 182.52956 * 25 24 23 40 40 H 1.08995 * 109.68488 * 350.23480 * 26 21 19 41 41 H 1.09004 * 109.68145 * 110.75248 * 26 21 19 42 42 H 1.08011 * 119.65263 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6179 0.0000 4 1 2.5411 2.0157 -1.3987 5 1 1.4121 2.6675 0.6460 6 1 3.5102 1.4563 0.7527 7 6 2.0077 -1.2143 0.0005 8 1 1.4677 -2.1497 -0.0052 9 6 3.4155 -1.2143 0.0086 10 7 4.0940 -0.1631 -0.4711 11 6 5.4096 -0.1714 -0.4603 12 6 6.1055 -1.2659 0.0471 13 7 5.4572 -2.3114 0.5242 14 6 4.1284 -2.3277 0.5247 15 6 3.3987 -3.4965 1.0576 16 6 3.8016 -4.7969 0.7266 17 6 3.0909 -5.8587 1.2541 18 6 1.9980 -5.6021 2.0820 19 6 1.2269 -6.7338 2.6456 20 8 1.7325 -7.8363 2.7199 21 7 -0.0357 -6.5409 3.0759 22 6 -0.7831 -7.6210 3.7394 23 6 -1.3639 -7.0666 5.0501 24 8 -2.0934 -5.8694 4.7704 25 6 -1.2960 -4.8091 4.2380 26 6 -0.7096 -5.2460 2.8907 27 7 1.6395 -4.3563 2.3714 28 6 2.2911 -3.3206 1.8954 29 1 -0.4850 0.8400 0.0004 30 1 5.9540 0.6774 -0.8472 31 1 7.1854 -1.2591 0.0492 32 1 4.6488 -4.9655 0.0784 33 1 3.3754 -6.8748 1.0240 34 1 -1.5910 -7.9603 3.0911 35 1 -0.1121 -8.4522 3.9563 36 1 -0.5541 -6.8455 5.7455 37 1 -2.0323 -7.8053 5.4927 38 1 -0.4859 -4.5797 4.9304 39 1 -1.9149 -3.9232 4.0956 40 1 0.0099 -4.5037 2.5454 41 1 -1.5099 -5.3502 2.1579 42 1 1.9696 -2.3222 2.1536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242652494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -4.145878 kcal Electronic energy + Delta-G solvation = -29133.903290 eV Core-core repulsion = 25078.696735 eV Total energy + Delta-G solvation = -4055.206556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05766 -41.27481 -40.26448 -39.19476 -36.08547 -35.97812 -35.02821 -33.92964 -33.20419 -32.40454 -31.16245 -29.02779 -28.18525 -26.38073 -25.19476 -24.50691 -24.10937 -23.47206 -22.66176 -20.92350 -19.85597 -18.82048 -18.28362 -18.13192 -17.68158 -17.27540 -17.12023 -16.89989 -16.29289 -16.17371 -16.02176 -15.82313 -15.74494 -15.39011 -15.14296 -15.03963 -14.70261 -14.39637 -14.30552 -14.01777 -13.59690 -13.32713 -13.27531 -13.08565 -12.88722 -12.71338 -12.41377 -12.34741 -11.86800 -11.80422 -11.49498 -11.41169 -11.25373 -11.00834 -10.92857 -10.40333 -10.11579 -9.74703 -9.62904 -9.33093 -8.98518 -6.80327 -0.60388 0.21020 0.39597 0.72869 1.46487 1.52887 1.57043 1.63108 1.73135 2.32024 2.54276 2.73412 2.83082 2.99786 3.39616 3.44164 3.59671 3.79071 3.93608 3.95143 4.00070 4.02365 4.09544 4.11922 4.24832 4.26461 4.28710 4.44791 4.56545 4.69174 4.70693 4.72409 4.82251 4.83141 4.90545 5.00843 5.09156 5.10140 5.28121 5.37300 5.61445 5.72105 5.93432 6.09804 6.12897 6.27799 6.40801 6.58577 6.93085 6.97244 7.42888 7.96293 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003660 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.072168 B = 7648.813455 C = 9319.695090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.058 3.942 3 Si 1.024 2.976 4 H -0.277 1.277 5 H -0.312 1.312 6 H -0.263 1.263 7 C -0.407 4.407 8 H 0.091 0.909 9 C 0.198 3.802 10 N -0.545 5.545 11 C 0.102 3.898 12 C -0.086 4.086 13 N -0.415 5.415 14 C -0.025 4.025 15 C -0.017 4.017 16 C -0.068 4.068 17 C -0.104 4.104 18 C 0.041 3.959 19 C 0.579 3.421 20 O -0.563 6.563 21 N -0.597 5.597 22 C 0.072 3.928 23 C 0.051 3.949 24 O -0.395 6.395 25 C 0.058 3.942 26 C 0.028 3.972 27 N -0.448 5.448 28 C 0.117 3.883 29 H 0.303 0.697 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.134 0.866 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -6.166 5.320 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.165 4.165 3 Si 0.855 3.145 4 H -0.203 1.203 5 H -0.243 1.243 6 H -0.189 1.189 7 C -0.438 4.438 8 H 0.109 0.891 9 C 0.074 3.926 10 N -0.266 5.266 11 C -0.065 4.065 12 C -0.248 4.248 13 N -0.127 5.127 14 C -0.169 4.169 15 C -0.020 4.020 16 C -0.094 4.094 17 C -0.125 4.125 18 C -0.095 4.095 19 C 0.367 3.633 20 O -0.442 6.442 21 N -0.329 5.329 22 C -0.050 4.050 23 C -0.026 4.026 24 O -0.313 6.313 25 C -0.019 4.019 26 C -0.094 4.094 27 N -0.159 5.159 28 C -0.043 4.043 29 H 0.114 0.886 30 H 0.199 0.801 31 H 0.197 0.803 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.152 0.848 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.168 0.832 41 H 0.086 0.914 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.231 -6.619 5.945 8.982 hybrid contribution 1.090 0.655 -0.962 1.595 sum -0.141 -5.964 4.983 7.773 Atomic orbital electron populations 1.69523 1.08959 1.32600 1.31492 1.26825 0.95446 1.04717 0.89506 0.84304 0.76700 0.74083 0.79389 1.20337 1.24252 1.18936 1.19456 0.88695 0.95564 1.40109 0.89138 1.19334 0.94665 0.88448 0.90143 1.68060 1.09578 1.27476 1.21482 1.24000 0.90574 0.98871 0.93049 1.23355 1.01370 0.92085 1.07951 1.67824 1.07989 1.26439 1.10485 1.19980 0.89854 0.97121 1.09987 1.19521 0.94863 0.92546 0.95088 1.21802 0.99119 0.90446 0.98047 1.22000 0.93779 1.01184 0.95540 1.21090 0.96852 0.91284 1.00274 1.17971 0.81446 0.86649 0.77248 1.90718 1.70453 1.25239 1.57797 1.48035 1.12599 1.14860 1.57379 1.22611 0.96680 0.90424 0.95283 1.23170 0.97235 0.87666 0.94498 1.87923 1.36402 1.23187 1.83823 1.22920 0.95511 0.90492 0.92973 1.23724 1.00000 0.86621 0.99059 1.67183 1.27457 0.98550 1.22729 1.23126 0.91072 0.97765 0.92350 0.88637 0.80137 0.80304 0.83128 0.82399 0.89559 0.88311 0.92861 0.84782 0.92787 0.86354 0.83183 0.91442 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.75 13.92 21.87 0.30 -37.44 16 2 C 0.06 2.70 5.52 85.35 0.47 3.17 16 3 Si 1.02 42.58 25.85 68.60 1.77 44.35 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.31 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.22 6.15 99.48 0.61 -10.61 16 7 C -0.41 -19.34 7.55 23.38 0.18 -19.16 16 8 H 0.09 4.49 6.44 -2.91 -0.02 4.47 16 9 C 0.20 9.02 6.09 40.35 0.25 9.26 16 10 N -0.54 -23.62 5.18 -187.81 -0.97 -24.59 16 11 C 0.10 3.63 11.22 84.98 0.95 4.58 16 12 C -0.09 -2.95 11.22 84.92 0.95 -2.00 16 13 N -0.41 -16.49 10.32 -182.31 -1.88 -18.37 16 14 C -0.02 -1.05 6.43 42.41 0.27 -0.77 16 15 C -0.02 -0.64 5.25 -19.89 -0.10 -0.75 16 16 C -0.07 -2.29 9.83 22.72 0.22 -2.07 16 17 C -0.10 -3.34 9.60 22.57 0.22 -3.12 16 18 C 0.04 1.41 6.48 41.91 0.27 1.68 16 19 C 0.58 19.26 7.61 86.86 0.66 19.92 16 20 O -0.56 -20.44 16.00 -3.80 -0.06 -20.50 16 21 N -0.60 -17.18 3.01 -819.69 -2.47 -19.65 16 22 C 0.07 1.63 6.65 86.49 0.57 2.20 16 23 C 0.05 1.00 7.00 72.22 0.51 1.51 16 24 O -0.39 -9.53 10.74 -148.98 -1.60 -11.13 16 25 C 0.06 1.42 6.98 72.08 0.50 1.92 16 26 C 0.03 0.79 6.40 86.35 0.55 1.34 16 27 N -0.45 -15.67 6.40 -183.78 -1.18 -16.85 16 28 C 0.12 4.44 8.96 85.20 0.76 5.20 16 29 H 0.30 12.90 8.29 -92.71 -0.77 12.13 16 30 H 0.18 4.80 8.06 -2.91 -0.02 4.77 16 31 H 0.18 4.67 8.06 -2.91 -0.02 4.64 16 32 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.16 4.44 7.77 -2.91 -0.02 4.42 16 34 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.10 2.26 7.12 -2.39 -0.02 2.24 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.15 4.78 3.78 -64.73 -0.24 4.53 16 41 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.17 6.54 6.80 -2.91 -0.02 6.52 16 Total: -1.00 -57.88 347.79 1.90 -55.98 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.75 Total: 25.28 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 7.24 Total: 22.91 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -6.20 Total: -116.91 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.66 Total: -31.62 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.77 Total: 44.35 kcal Total: -57.88 1.90 -55.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242652494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.830 kcal (2) G-P(sol) polarization free energy of solvation -57.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds