Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48500 * 109.47094 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47175 * 120.00385 * 3 2 1 6 6 H 1.48503 * 109.47045 * 240.00431 * 3 2 1 7 7 C 1.40034 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00297 * 4.85211 * 7 2 1 9 9 C 1.41341 * 119.99763 * 184.85808 * 7 2 1 10 10 C 1.40628 * 119.78337 * 185.10285 * 9 7 2 11 11 C 1.38307 * 119.13265 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.67111 * 359.97438 * 11 10 9 13 13 C 1.39663 * 119.49721 * 0.02562 * 12 11 10 14 14 N 1.39118 * 119.58062 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99737 * 338.91995 * 14 13 12 16 16 O 1.21355 * 120.00308 * 3.84544 * 15 14 13 17 17 C 1.49369 * 119.99769 * 183.85357 * 15 14 13 18 18 O 1.21350 * 120.00153 * 5.55696 * 17 15 14 19 19 N 1.34775 * 119.99759 * 185.56353 * 17 15 14 20 20 C 1.47056 * 120.98202 * 183.83064 * 19 17 15 21 21 C 1.53749 * 109.00623 * 115.88559 * 20 19 17 22 22 N 1.46714 * 109.19971 * 46.50998 * 21 20 19 23 23 C 1.36090 * 126.92594 * 161.33702 * 22 21 20 24 24 C 1.34967 * 108.26972 * 179.38178 * 23 22 21 25 25 C 1.41053 * 107.46338 * 0.14470 * 24 23 22 26 26 C 1.34218 * 107.28736 * 0.09793 * 25 24 23 27 27 C 1.47481 * 120.98795 * 4.10820 * 19 17 15 28 28 N 1.31966 * 120.84157 * 359.73167 * 13 12 11 29 29 H 0.97002 * 120.00581 * 174.99046 * 1 2 3 30 30 H 1.07999 * 120.43452 * 359.94813 * 10 9 7 31 31 H 1.08005 * 120.66310 * 180.02562 * 11 10 9 32 32 H 1.08007 * 120.25253 * 179.97438 * 12 11 10 33 33 H 0.96995 * 119.99395 * 158.91766 * 14 13 12 34 34 H 1.09000 * 109.50093 * 235.83717 * 20 19 17 35 35 H 1.08994 * 109.50176 * 355.94203 * 20 19 17 36 36 H 1.08996 * 109.64209 * 286.52262 * 21 20 19 37 37 H 1.08999 * 109.41260 * 166.35327 * 21 20 19 38 38 H 1.08000 * 125.86469 * 359.33758 * 23 22 21 39 39 H 1.07994 * 126.27455 * 180.18296 * 24 23 22 40 40 H 1.08003 * 126.36143 * 180.09945 * 25 24 23 41 41 H 1.09003 * 109.94744 * 342.56648 * 27 19 17 42 42 H 1.09001 * 109.95228 * 103.74135 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0952 1.6963 1.2124 6 1 3.0951 1.6964 -1.2126 7 6 2.0075 -1.2127 -0.0005 8 1 1.4704 -2.1463 -0.0801 9 6 3.4171 -1.2150 0.1031 10 6 4.1236 -2.4260 -0.0058 11 6 5.5027 -2.4126 0.0971 12 6 6.1427 -1.1997 0.3045 13 6 5.3852 -0.0306 0.4042 14 7 6.0253 1.1868 0.6128 15 6 7.2686 1.2141 1.1322 16 8 7.8569 0.1759 1.3529 17 6 7.9223 2.5222 1.4364 18 8 7.2988 3.5557 1.3114 19 7 9.2048 2.5546 1.8496 20 6 9.8442 3.8216 2.2349 21 6 10.2072 3.7656 3.7279 22 7 10.8598 2.4840 4.0179 23 6 11.6316 2.1855 5.0984 24 6 12.0272 0.8994 4.9935 25 6 11.4806 0.3845 3.7994 26 6 10.7779 1.3725 3.2238 27 6 10.0103 1.3214 1.9230 28 7 4.0702 -0.0654 0.2983 29 1 -0.4851 -0.8368 -0.0734 30 1 3.5961 -3.3545 -0.1674 31 1 6.0700 -3.3281 0.0168 32 1 7.2187 -1.1597 0.3892 33 1 5.5767 2.0159 0.3843 34 1 10.7478 3.9678 1.6432 35 1 9.1543 4.6463 2.0563 36 1 9.3024 3.8576 4.3286 37 1 10.8880 4.5828 3.9661 38 1 11.8847 2.8619 5.9014 39 1 12.6479 0.3625 5.6955 40 1 11.6046 -0.6187 3.4189 41 1 9.3568 0.4491 1.9108 42 1 10.7028 1.2788 1.0823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262746477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = 50.866549 kcal Electronic energy + Delta-G solvation = -28946.993107 eV Core-core repulsion = 24894.172069 eV Total energy + Delta-G solvation = -4052.821038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86157 -40.91562 -39.32819 -38.12655 -36.60316 -34.87953 -33.63747 -33.39113 -31.24158 -30.27050 -29.87515 -29.09089 -26.16117 -25.59771 -25.09772 -23.42729 -21.95902 -21.40404 -20.78928 -19.92609 -19.21285 -18.43104 -17.85245 -17.74257 -16.84015 -16.45755 -16.35929 -15.85235 -15.58358 -15.23329 -14.70239 -14.43876 -14.33855 -13.97618 -13.79315 -13.74623 -13.31822 -13.08577 -12.87690 -12.85796 -12.50711 -12.33166 -12.30350 -12.21241 -11.98183 -11.89282 -11.33802 -10.97107 -10.89601 -10.39449 -10.20375 -9.72265 -9.37751 -9.27315 -9.11888 -8.74232 -8.67647 -8.07207 -7.82752 -7.65770 -7.30655 -4.87246 1.08859 1.91054 2.07201 2.37992 2.53557 2.68661 2.91047 3.11614 3.27972 3.52538 3.60394 3.92945 4.07222 4.14037 4.34331 4.36253 4.54650 4.59487 4.65215 4.88836 5.08970 5.12381 5.29564 5.38949 5.40753 5.46643 5.55256 5.72327 5.74816 6.01077 6.12297 6.19406 6.26216 6.40305 6.43399 6.62437 6.87431 6.93000 6.98021 7.05405 7.18284 7.23570 7.36620 7.45306 7.51476 7.60851 7.92443 8.02800 8.23346 8.54150 9.26953 9.92721 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.003027 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.231490 B = 9246.409495 C =10212.963585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.043 3.957 3 Si 1.151 2.849 4 H -0.329 1.329 5 H -0.279 1.279 6 H -0.293 1.293 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.271 3.729 10 C -0.267 4.267 11 C -0.035 4.035 12 C -0.309 4.309 13 C 0.376 3.624 14 N -0.615 5.615 15 C 0.514 3.486 16 O -0.484 6.484 17 C 0.520 3.480 18 O -0.511 6.511 19 N -0.591 5.591 20 C 0.097 3.903 21 C 0.092 3.908 22 N -0.449 5.449 23 C -0.015 4.015 24 C -0.200 4.200 25 C -0.186 4.186 26 C 0.007 3.993 27 C 0.127 3.873 28 N -0.594 5.594 29 H 0.284 0.716 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.419 0.581 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.173 0.827 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.343 6.689 5.423 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.179 4.179 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.207 1.207 6 H -0.221 1.221 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.147 3.853 10 C -0.290 4.290 11 C -0.059 4.059 12 C -0.334 4.334 13 C 0.146 3.854 14 N -0.260 5.260 15 C 0.296 3.704 16 O -0.360 6.360 17 C 0.302 3.698 18 O -0.385 6.385 19 N -0.326 5.326 20 C -0.025 4.025 21 C -0.031 4.031 22 N -0.127 5.127 23 C -0.144 4.144 24 C -0.225 4.225 25 C -0.210 4.210 26 C -0.105 4.105 27 C 0.006 3.994 28 N -0.320 5.320 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.163 0.837 33 H 0.257 0.743 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.177 0.823 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.189 0.811 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.444 9.159 5.568 23.084 hybrid contribution 0.394 -2.154 0.004 2.190 sum 20.838 7.005 5.572 22.679 Atomic orbital electron populations 1.70640 1.08180 1.32917 1.30469 1.27793 0.95326 1.06195 0.88544 0.81904 0.70944 0.69638 0.78969 1.26280 1.20699 1.22107 1.20767 0.90315 0.96446 1.42763 0.89661 1.18277 0.93464 0.85785 0.87751 1.21676 0.94075 0.98409 1.14810 1.20953 0.94143 0.96518 0.94334 1.21671 1.01156 0.91339 1.19255 1.18041 0.88928 0.83532 0.94891 1.42900 1.14753 1.10100 1.58219 1.19834 0.82447 0.89344 0.78806 1.90263 1.61417 1.33478 1.50847 1.19971 0.81958 0.89498 0.78344 1.90786 1.62684 1.34144 1.50899 1.47961 1.10633 1.09497 1.64469 1.22055 0.99552 0.87747 0.93188 1.22378 0.98651 0.84694 0.97365 1.44052 1.39621 1.10127 1.18921 1.21702 1.01020 0.98248 0.93409 1.20916 1.06968 0.94601 1.00010 1.20460 1.04162 0.98857 0.97557 1.20604 1.05637 0.87790 0.96421 1.22117 0.95040 0.89996 0.92244 1.66022 1.06519 1.29923 1.29492 0.90458 0.87432 0.87252 0.83711 0.74301 0.89430 0.86510 0.89717 0.88242 0.82312 0.84641 0.84314 0.81110 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.54 13.65 55.55 0.76 -20.78 16 2 C 0.04 1.16 5.52 -17.35 -0.10 1.06 16 3 Si 1.15 27.91 25.61 -169.99 -4.35 23.56 16 4 H -0.33 -7.94 7.11 56.52 0.40 -7.54 16 5 H -0.28 -6.75 6.61 56.52 0.37 -6.37 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.47 -12.56 9.57 -37.73 -0.36 -12.93 16 8 H 0.09 2.25 8.05 -52.49 -0.42 1.83 16 9 C 0.27 6.94 6.40 -84.99 -0.54 6.39 16 10 C -0.27 -6.10 9.83 -38.65 -0.38 -6.48 16 11 C -0.04 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.31 -6.47 8.90 -38.88 -0.35 -6.81 16 13 C 0.38 8.35 7.50 -155.08 -1.16 7.19 16 14 N -0.61 -11.60 5.39 -11.84 -0.06 -11.67 16 15 C 0.51 8.41 7.69 -11.63 -0.09 8.32 16 16 O -0.48 -8.06 9.73 5.49 0.05 -8.01 16 17 C 0.52 7.38 7.77 -11.62 -0.09 7.29 16 18 O -0.51 -7.98 15.94 5.50 0.09 -7.89 16 19 N -0.59 -6.79 2.96 -173.64 -0.51 -7.30 16 20 C 0.10 0.81 6.44 -3.35 -0.02 0.79 16 21 C 0.09 0.70 7.14 -3.54 -0.03 0.68 16 22 N -0.45 -4.63 3.15 -111.86 -0.35 -4.98 16 23 C -0.01 -0.14 11.49 -16.82 -0.19 -0.33 16 24 C -0.20 -2.11 10.87 -39.68 -0.43 -2.54 16 25 C -0.19 -2.14 10.81 -39.93 -0.43 -2.57 16 26 C 0.01 0.08 6.67 -81.56 -0.54 -0.47 16 27 C 0.13 1.42 6.53 -4.45 -0.03 1.39 16 28 N -0.59 -14.81 4.54 -10.28 -0.05 -14.85 16 29 H 0.28 7.28 8.72 -40.82 -0.36 6.92 16 30 H 0.11 2.28 8.06 -52.49 -0.42 1.85 16 31 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.15 2.81 5.17 -50.51 -0.26 2.55 16 33 H 0.42 7.59 8.32 -40.82 -0.34 7.25 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 0.95 7.01 -51.93 -0.36 0.58 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.17 2.23 4.04 -53.62 -0.22 2.02 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -30.69 349.24 -8.90 -39.59 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.59 Total: 7.21 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -5.15 Total: -0.13 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.22 Total: -59.59 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.14 Total: -15.90 kcal Atomic # 14 Polarization: 27.91 SS G_CDS: -4.35 Total: 23.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.69 -8.90 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262746477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.455 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds