Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.49912 * 60.06310 * 10 9 7 12 12 O 1.42904 * 109.46935 * 305.00140 * 11 10 9 13 13 C 1.53040 * 109.49810 * 180.16069 * 10 9 7 14 14 C 1.53042 * 109.53933 * 58.58702 * 13 10 9 15 15 C 1.53186 * 109.31405 * 61.36108 * 14 13 10 16 16 N 1.46933 * 108.77835 * 305.37010 * 15 14 13 17 17 C 1.34780 * 120.62707 * 233.58716 * 16 15 14 18 18 O 1.21280 * 119.99626 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00354 * 0.02562 * 17 16 15 20 20 O 1.42894 * 109.47028 * 180.02562 * 19 17 16 21 21 C 1.36234 * 116.99910 * 180.02562 * 20 19 17 22 22 C 1.38668 * 122.58565 * 179.74036 * 21 20 19 23 23 C 1.33432 * 114.88427 * 179.76375 * 22 21 20 24 24 S 1.75865 * 109.65653 * 0.47092 * 23 22 21 25 25 C 1.33632 * 122.58646 * 0.02562 * 21 20 19 26 26 C 1.46926 * 118.73895 * 53.60558 * 16 15 14 27 27 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47198 * 65.00383 * 11 10 9 30 30 H 1.08998 * 109.47212 * 185.00285 * 11 10 9 31 31 H 0.96699 * 113.99577 * 179.97438 * 12 11 10 32 32 H 1.09003 * 109.46049 * 178.60311 * 13 10 9 33 33 H 1.08990 * 109.46003 * 298.56339 * 13 10 9 34 34 H 1.09001 * 109.49604 * 301.41380 * 14 13 10 35 35 H 1.08998 * 109.50151 * 181.31562 * 14 13 10 36 36 H 1.09000 * 109.59111 * 185.58354 * 15 14 13 37 37 H 1.08999 * 109.70584 * 65.22457 * 15 14 13 38 38 H 1.09004 * 109.46907 * 300.00186 * 19 17 16 39 39 H 1.09000 * 109.47058 * 60.00166 * 19 17 16 40 40 H 1.07998 * 122.55541 * 359.97027 * 22 21 20 41 41 H 1.08000 * 125.17215 * 180.22831 * 23 22 21 42 42 H 1.08001 * 125.19425 * 359.97438 * 25 21 20 43 43 H 1.09000 * 109.58454 * 186.60614 * 26 16 15 44 44 H 1.09003 * 109.58487 * 66.18281 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9414 -3.7365 1.2514 12 8 3.7907 -2.5886 1.3074 13 6 1.0639 -4.8204 0.0071 14 6 0.1581 -4.7224 -1.2226 15 6 1.0127 -4.8190 -2.4903 16 7 2.0636 -3.7938 -2.4316 17 6 2.2262 -2.9184 -3.4434 18 8 3.0977 -2.0771 -3.3832 19 6 1.3252 -2.9849 -4.6495 20 8 1.6936 -1.9615 -5.5763 21 6 0.9723 -1.8824 -6.7293 22 6 1.2268 -0.9312 -7.7056 23 6 0.4304 -0.9965 -8.7743 24 16 -0.7249 -2.3069 -8.5719 25 6 -0.0386 -2.7120 -7.0042 26 6 2.9341 -3.7414 -1.2491 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 0.0092 29 1 2.3125 -3.7670 2.1410 30 1 3.5519 -4.6384 1.2070 31 1 4.3796 -2.5722 2.0742 32 1 1.6092 -5.7639 -0.0180 33 1 0.4557 -4.7767 0.9105 34 1 -0.3689 -3.7683 -1.2111 35 1 -0.5647 -5.5381 -1.2081 36 1 0.3868 -4.6507 -3.3667 37 1 1.4691 -5.8069 -2.5515 38 1 1.4273 -3.9600 -5.1260 39 1 0.2907 -2.8389 -4.3387 40 1 2.0119 -0.1958 -7.6099 41 1 0.4844 -0.3415 -9.6313 42 1 -0.3814 -3.5098 -6.3619 43 1 3.5758 -2.8622 -1.3065 44 1 3.5471 -4.6417 -1.2065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273930249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -49.718670 kcal Electronic energy + Delta-G solvation = -28710.698596 eV Core-core repulsion = 24756.667056 eV Total energy + Delta-G solvation = -3954.031540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24402 -39.40672 -37.68280 -35.89952 -35.65954 -33.82423 -32.28130 -31.12069 -29.25668 -29.05383 -28.29147 -25.39301 -25.04716 -23.47707 -23.33001 -21.74490 -19.79910 -19.52323 -18.45966 -18.14625 -17.29232 -16.94626 -16.44834 -16.27021 -16.09698 -15.52121 -14.90155 -14.44242 -14.24335 -14.12543 -13.95059 -13.61060 -13.55225 -13.26006 -13.05841 -12.97899 -12.65866 -12.48783 -12.23905 -12.06688 -11.78162 -11.62812 -11.21223 -10.99571 -10.88633 -10.83231 -10.70507 -10.61952 -10.48246 -10.14649 -9.68214 -9.48873 -9.24601 -8.97108 -8.92493 -8.78505 -8.09940 -8.03573 -6.79230 -5.54483 -2.79875 0.89568 1.53011 1.88001 2.68537 2.82300 3.11190 3.60950 3.68556 3.72708 3.79223 4.66641 4.75388 4.82528 4.83095 4.98283 5.03057 5.14059 5.16761 5.24821 5.32255 5.39934 5.43176 5.59300 5.61295 5.74636 5.80258 5.85591 5.88950 5.89836 6.00120 6.07415 6.13216 6.15967 6.23122 6.33739 6.58357 6.75142 6.84706 7.03354 7.28755 7.84954 8.20629 8.39278 8.63633 8.68867 9.77510 10.23933 10.59452 11.69327 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003780 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.294105 B = 7404.821882 C = 8712.545273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.023 4.023 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.298 1.298 7 C -0.195 4.195 8 H 0.093 0.907 9 N -0.703 5.703 10 C 0.188 3.812 11 C 0.075 3.925 12 O -0.535 6.535 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.109 3.891 16 N -0.592 5.592 17 C 0.522 3.478 18 O -0.506 6.506 19 C 0.048 3.952 20 O -0.275 6.275 21 C 0.123 3.877 22 C -0.137 4.137 23 C -0.188 4.188 24 S 0.106 5.894 25 C -0.328 4.328 26 C 0.112 3.888 27 H 0.248 0.752 28 H 0.381 0.619 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.351 0.649 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.166 0.834 43 H 0.104 0.896 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -13.944 -11.349 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.217 4.217 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.226 1.226 7 C -0.326 4.326 8 H 0.110 0.890 9 N -0.343 5.343 10 C 0.094 3.906 11 C -0.006 4.006 12 O -0.338 6.338 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.014 4.014 16 N -0.326 5.326 17 C 0.308 3.692 18 O -0.379 6.379 19 C -0.031 4.031 20 O -0.187 6.187 21 C 0.066 3.934 22 C -0.169 4.169 23 C -0.323 4.323 24 S 0.366 5.634 25 C -0.464 4.464 26 C -0.012 4.012 27 H 0.058 0.942 28 H 0.216 0.784 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.196 0.804 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.170 0.830 41 H 0.189 0.811 42 H 0.183 0.817 43 H 0.122 0.878 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.537 -13.636 -12.680 18.683 hybrid contribution 1.135 1.120 1.579 2.244 sum -0.402 -12.515 -11.101 16.734 Atomic orbital electron populations 1.69662 1.05023 1.24905 1.60267 1.24647 0.95349 0.97452 1.04220 0.86138 0.79232 0.84641 0.76499 1.20503 1.22457 1.22631 1.19567 0.91934 0.82948 1.38143 0.88961 1.42425 1.05178 0.99273 1.87425 1.19958 0.90955 0.88155 0.91533 1.22743 0.92104 0.86783 0.99015 1.86980 1.54540 1.43782 1.48474 1.21617 0.97741 0.97575 0.98372 1.21870 0.97812 1.03308 0.94118 1.21686 0.89613 0.91337 0.98810 1.47624 1.34248 1.32053 1.18695 1.19629 0.84846 0.81456 0.83303 1.90743 1.33906 1.34212 1.79044 1.22523 0.99855 0.91108 0.89595 1.86242 1.54322 1.52279 1.25889 1.17957 0.92171 0.95266 0.87980 1.19540 1.03552 1.01058 0.92751 1.25476 1.00389 1.03541 1.02933 1.84024 1.35506 1.29276 1.14631 1.25300 1.06413 1.10404 1.04235 1.22167 0.92680 1.02006 0.84320 0.94234 0.78417 0.94355 0.95847 0.80401 0.91934 0.91415 0.89950 0.91307 0.90882 0.91667 0.89868 0.89154 0.83033 0.81087 0.81670 0.87770 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.48 13.06 55.49 0.72 -28.76 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 3 Si 0.90 24.71 29.55 -169.99 -5.02 19.69 16 4 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.30 -8.34 7.11 56.52 0.40 -7.94 16 6 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 7 C -0.19 -5.49 8.07 -15.06 -0.12 -5.61 16 8 H 0.09 2.70 5.26 -52.49 -0.28 2.42 16 9 N -0.70 -16.89 4.74 -47.12 -0.22 -17.11 16 10 C 0.19 3.46 0.68 -131.70 -0.09 3.37 16 11 C 0.07 1.28 6.09 37.16 0.23 1.50 16 12 O -0.54 -10.34 10.04 -35.23 -0.35 -10.69 16 13 C -0.11 -1.63 4.76 -26.69 -0.13 -1.76 16 14 C -0.13 -1.76 5.91 -26.61 -0.16 -1.92 16 15 C 0.11 1.36 6.34 -3.71 -0.02 1.33 16 16 N -0.59 -10.20 2.89 -172.77 -0.50 -10.70 16 17 C 0.52 10.33 7.78 -10.99 -0.09 10.25 16 18 O -0.51 -12.58 15.91 -14.35 -0.23 -12.81 16 19 C 0.05 0.75 3.69 36.00 0.13 0.88 16 20 O -0.27 -4.93 9.74 -40.40 -0.39 -5.33 16 21 C 0.12 1.82 6.64 -41.04 -0.27 1.55 16 22 C -0.14 -1.78 10.17 -41.10 -0.42 -2.20 16 23 C -0.19 -1.95 11.22 29.05 0.33 -1.62 16 24 S 0.11 1.09 23.34 -107.50 -2.51 -1.42 16 25 C -0.33 -4.05 10.09 29.12 0.29 -3.76 16 26 C 0.11 2.10 4.91 -3.71 -0.02 2.08 16 27 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.38 9.79 6.43 -40.82 -0.26 9.53 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.35 5.01 9.12 45.56 0.42 5.42 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 39 H 0.09 1.32 7.41 -51.93 -0.38 0.93 16 40 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.17 1.73 7.02 -52.49 -0.37 1.36 16 43 H 0.10 2.43 5.82 -51.93 -0.30 2.13 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -37.35 365.29 -8.61 -45.96 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.17 Total: 12.37 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.43 Total: 3.30 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.00 Total: -56.57 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.98 Total: -28.83 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.02 Total: 19.69 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.35 -8.61 -45.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273930249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.763 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds