Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.49912 * 60.06310 * 10 9 7 12 12 O 1.42904 * 109.46935 * 305.00140 * 11 10 9 13 13 C 1.53040 * 109.49810 * 180.16069 * 10 9 7 14 14 C 1.53042 * 109.53933 * 58.58702 * 13 10 9 15 15 C 1.53186 * 109.31405 * 61.36108 * 14 13 10 16 16 N 1.46933 * 108.77835 * 305.37010 * 15 14 13 17 17 C 1.34780 * 120.62707 * 233.58716 * 16 15 14 18 18 O 1.21280 * 119.99626 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00354 * 0.02562 * 17 16 15 20 20 O 1.42894 * 109.47028 * 180.02562 * 19 17 16 21 21 C 1.36234 * 116.99910 * 180.02562 * 20 19 17 22 22 C 1.38668 * 122.58565 * 179.74036 * 21 20 19 23 23 C 1.33432 * 114.88427 * 179.76375 * 22 21 20 24 24 S 1.75865 * 109.65653 * 0.47092 * 23 22 21 25 25 C 1.33632 * 122.58646 * 0.02562 * 21 20 19 26 26 C 1.46926 * 118.73895 * 53.60558 * 16 15 14 27 27 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47198 * 65.00383 * 11 10 9 30 30 H 1.08998 * 109.47212 * 185.00285 * 11 10 9 31 31 H 0.96699 * 113.99577 * 179.97438 * 12 11 10 32 32 H 1.09003 * 109.46049 * 178.60311 * 13 10 9 33 33 H 1.08990 * 109.46003 * 298.56339 * 13 10 9 34 34 H 1.09001 * 109.49604 * 301.41380 * 14 13 10 35 35 H 1.08998 * 109.50151 * 181.31562 * 14 13 10 36 36 H 1.09000 * 109.59111 * 185.58354 * 15 14 13 37 37 H 1.08999 * 109.70584 * 65.22457 * 15 14 13 38 38 H 1.09004 * 109.46907 * 300.00186 * 19 17 16 39 39 H 1.09000 * 109.47058 * 60.00166 * 19 17 16 40 40 H 1.07998 * 122.55541 * 359.97027 * 22 21 20 41 41 H 1.08000 * 125.17215 * 180.22831 * 23 22 21 42 42 H 1.08001 * 125.19425 * 359.97438 * 25 21 20 43 43 H 1.09000 * 109.58454 * 186.60614 * 26 16 15 44 44 H 1.09003 * 109.58487 * 66.18281 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9414 -3.7365 1.2514 12 8 3.7907 -2.5886 1.3074 13 6 1.0639 -4.8204 0.0071 14 6 0.1581 -4.7224 -1.2226 15 6 1.0127 -4.8190 -2.4903 16 7 2.0636 -3.7938 -2.4316 17 6 2.2262 -2.9184 -3.4434 18 8 3.0977 -2.0771 -3.3832 19 6 1.3252 -2.9849 -4.6495 20 8 1.6936 -1.9615 -5.5763 21 6 0.9723 -1.8824 -6.7293 22 6 1.2268 -0.9312 -7.7056 23 6 0.4304 -0.9965 -8.7743 24 16 -0.7249 -2.3069 -8.5719 25 6 -0.0386 -2.7120 -7.0042 26 6 2.9341 -3.7414 -1.2491 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 0.0092 29 1 2.3125 -3.7670 2.1410 30 1 3.5519 -4.6384 1.2070 31 1 4.3796 -2.5722 2.0742 32 1 1.6092 -5.7639 -0.0180 33 1 0.4557 -4.7767 0.9105 34 1 -0.3689 -3.7683 -1.2111 35 1 -0.5647 -5.5381 -1.2081 36 1 0.3868 -4.6507 -3.3667 37 1 1.4691 -5.8069 -2.5515 38 1 1.4273 -3.9600 -5.1260 39 1 0.2907 -2.8389 -4.3387 40 1 2.0119 -0.1958 -7.6099 41 1 0.4844 -0.3415 -9.6313 42 1 -0.3814 -3.5098 -6.3619 43 1 3.5758 -2.8622 -1.3065 44 1 3.5471 -4.6417 -1.2065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273930249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -78.681054 kcal Electronic energy + Delta-G solvation = -28711.954499 eV Core-core repulsion = 24756.667056 eV Total energy + Delta-G solvation = -3955.287443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54011 -40.60799 -39.15087 -37.18621 -36.85550 -35.57287 -34.00089 -32.55665 -30.81791 -30.08145 -29.77367 -26.65124 -26.33753 -25.54266 -24.34370 -22.96260 -21.00721 -20.73311 -19.80039 -19.34949 -19.04906 -18.04065 -17.80710 -17.74833 -17.39554 -16.93581 -16.43019 -15.95307 -15.67432 -15.65637 -15.12695 -15.00557 -14.90416 -14.55653 -14.50010 -14.07233 -13.83328 -13.66879 -13.55181 -13.51767 -13.18728 -12.95463 -12.83121 -12.71561 -12.58721 -12.05321 -11.99194 -11.91486 -11.87667 -11.78756 -11.35979 -11.30455 -10.94074 -10.67564 -10.56144 -9.80866 -9.55186 -8.95757 -8.80900 -7.82896 -5.02540 -0.00328 0.67461 0.97811 1.36447 1.41741 1.49606 1.53838 1.70338 1.74814 2.61622 2.64258 3.37848 3.47031 3.68017 3.83601 3.89805 3.98103 3.99744 4.05965 4.11226 4.19725 4.33771 4.34627 4.42458 4.53102 4.61786 4.64661 4.78797 4.83033 4.90018 4.92894 4.94670 5.02814 5.06341 5.18925 5.21500 5.44683 5.53899 5.68131 5.92912 6.19941 6.43374 6.50684 7.17324 7.25574 7.52414 8.21499 8.43487 9.41822 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003780 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.294105 B = 7404.821882 C = 8712.545273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.090 4.090 3 Si 0.941 3.059 4 H -0.280 1.280 5 H -0.312 1.312 6 H -0.293 1.293 7 C -0.159 4.159 8 H 0.080 0.920 9 N -0.710 5.710 10 C 0.174 3.826 11 C 0.073 3.927 12 O -0.572 6.572 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.101 3.899 16 N -0.589 5.589 17 C 0.505 3.495 18 O -0.577 6.577 19 C 0.057 3.943 20 O -0.317 6.317 21 C 0.088 3.912 22 C -0.174 4.174 23 C -0.175 4.175 24 S 0.157 5.843 25 C -0.331 4.331 26 C 0.115 3.885 27 H 0.239 0.761 28 H 0.371 0.629 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.373 0.627 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.203 0.797 42 H 0.184 0.816 43 H 0.048 0.952 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -17.843 -12.456 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.280 4.280 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.241 1.241 6 H -0.221 1.221 7 C -0.292 4.292 8 H 0.098 0.902 9 N -0.349 5.349 10 C 0.082 3.918 11 C -0.007 4.007 12 O -0.378 6.378 13 C -0.147 4.147 14 C -0.168 4.168 15 C -0.021 4.021 16 N -0.322 5.322 17 C 0.292 3.708 18 O -0.456 6.456 19 C -0.021 4.021 20 O -0.231 6.231 21 C 0.032 3.968 22 C -0.205 4.205 23 C -0.310 4.310 24 S 0.418 5.582 25 C -0.466 4.466 26 C -0.009 4.009 27 H 0.048 0.952 28 H 0.204 0.796 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.220 0.780 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.162 0.838 41 H 0.220 0.780 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.544 -17.627 -13.764 22.509 hybrid contribution 1.494 2.153 1.872 3.221 sum -1.050 -15.474 -11.891 19.544 Atomic orbital electron populations 1.69754 1.05641 1.24379 1.63538 1.25136 0.96061 0.99624 1.07174 0.85464 0.78344 0.82743 0.75888 1.20514 1.24104 1.22103 1.19650 0.91477 0.84491 1.33577 0.90202 1.42546 1.04858 1.00344 1.87128 1.20471 0.92028 0.87330 0.91921 1.22750 0.92369 0.87704 0.97891 1.86879 1.55474 1.45399 1.50065 1.21644 0.97085 0.97062 0.98920 1.21861 0.98251 1.02674 0.94008 1.22146 0.88791 0.91611 0.99511 1.47826 1.34724 1.32271 1.17352 1.20538 0.84584 0.80764 0.84878 1.90700 1.36992 1.37172 1.80721 1.22535 0.98629 0.92792 0.88171 1.86174 1.55934 1.53602 1.27363 1.18297 0.93609 0.97176 0.87687 1.19676 1.05058 1.01843 0.93934 1.25891 0.99010 1.03443 1.02676 1.83864 1.33994 1.28002 1.12382 1.25656 1.05380 1.09979 1.05618 1.21993 0.92739 1.01194 0.84976 0.95208 0.79561 0.94370 0.91485 0.77955 0.87701 0.91484 0.94256 0.87019 0.88590 0.87378 0.85524 0.88368 0.83810 0.77974 0.79838 0.93316 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.28 13.06 21.65 0.28 -63.00 16 2 C -0.09 -5.65 5.50 84.86 0.47 -5.19 16 3 Si 0.94 53.08 29.55 68.60 2.03 55.11 16 4 H -0.28 -15.50 7.11 99.48 0.71 -14.80 16 5 H -0.31 -18.16 7.11 99.48 0.71 -17.45 16 6 H -0.29 -16.05 7.11 99.48 0.71 -15.34 16 7 C -0.16 -9.26 8.07 84.03 0.68 -8.59 16 8 H 0.08 4.86 5.26 -2.91 -0.02 4.85 16 9 N -0.71 -34.58 4.74 -302.99 -1.44 -36.02 16 10 C 0.17 6.13 0.68 3.68 0.00 6.14 16 11 C 0.07 2.33 6.09 71.98 0.44 2.77 16 12 O -0.57 -21.94 10.04 -148.98 -1.50 -23.44 16 13 C -0.11 -2.68 4.76 30.62 0.15 -2.53 16 14 C -0.13 -2.96 5.91 30.67 0.18 -2.78 16 15 C 0.10 2.09 6.34 86.36 0.55 2.64 16 16 N -0.59 -19.54 2.89 -818.89 -2.37 -21.91 16 17 C 0.50 20.36 7.78 87.66 0.68 21.05 16 18 O -0.58 -30.57 15.91 16.01 0.25 -30.32 16 19 C 0.06 1.74 3.69 71.23 0.26 2.01 16 20 O -0.32 -11.81 9.74 -77.19 -0.75 -12.57 16 21 C 0.09 2.63 6.64 21.33 0.14 2.77 16 22 C -0.17 -4.58 10.17 21.28 0.22 -4.37 16 23 C -0.17 -3.31 11.22 66.73 0.75 -2.57 16 24 S 0.16 2.79 23.34 -56.49 -1.32 1.47 16 25 C -0.33 -7.58 10.09 66.77 0.67 -6.91 16 26 C 0.12 4.19 4.91 86.36 0.42 4.62 16 27 H 0.24 15.33 8.31 -92.71 -0.77 14.55 16 28 H 0.37 19.48 6.43 -92.71 -0.60 18.89 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.37 10.38 9.12 -74.06 -0.68 9.70 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.26 6.75 -2.39 -0.02 1.24 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.58 5.93 -2.39 -0.01 1.56 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.13 2.65 7.66 -2.38 -0.02 2.63 16 39 H 0.10 2.79 7.41 -2.39 -0.02 2.77 16 40 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 41 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.18 3.30 7.02 -2.91 -0.02 3.28 16 43 H 0.05 2.35 5.82 -2.39 -0.01 2.33 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -90.21 365.29 0.58 -89.63 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.22 Total: 31.98 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.61 Total: 9.06 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -3.52 Total: -120.92 kcal Atomic # 8 Polarization: -64.33 SS G_CDS: -1.99 Total: -66.32 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.03 Total: 55.11 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.32 Total: 1.47 kcal Total: -90.21 0.58 -89.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273930249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.944 kcal (2) G-P(sol) polarization free energy of solvation -90.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds