Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48502 * 109.47058 * 240.00162 * 3 2 1 5 5 H 1.48504 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46874 * 120.00106 * 3 2 1 7 7 C 1.39937 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99940 * 191.74936 * 7 2 1 9 9 C 1.41437 * 119.99897 * 11.75678 * 7 2 1 10 10 C 1.40781 * 120.17928 * 210.23617 * 9 7 2 11 11 C 1.37712 * 120.04289 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.40826 * 0.02562 * 11 10 9 13 13 C 1.39876 * 120.36108 * 359.97438 * 12 11 10 14 14 C 1.47883 * 120.02600 * 179.97438 * 13 12 11 15 15 O 1.21541 * 120.00492 * 213.30556 * 14 13 12 16 16 N 1.34780 * 119.99691 * 33.31016 * 14 13 12 17 17 C 1.47282 * 121.10078 * 187.79702 * 16 14 13 18 18 C 1.53289 * 109.11463 * 116.50891 * 17 16 14 19 19 N 1.46405 * 109.24450 * 45.73286 * 18 17 16 20 20 C 1.37671 * 127.45914 * 161.72039 * 19 18 17 21 21 C 1.46762 * 126.88833 * 359.37614 * 20 19 18 22 22 N 1.34777 * 119.99944 * 6.20482 * 21 20 19 23 23 O 1.21680 * 120.00160 * 186.21152 * 21 20 19 24 24 C 1.36815 * 106.22298 * 179.34765 * 20 19 18 25 25 N 1.33479 * 107.83791 * 0.14649 * 24 20 19 26 26 C 1.30447 * 109.62881 * 0.12361 * 25 24 20 27 27 C 1.47429 * 120.98442 * 7.76561 * 16 14 13 28 28 C 1.39032 * 119.94726 * 0.28198 * 13 12 11 29 29 H 0.96996 * 119.99901 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.97734 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.79305 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.81543 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.49859 * 356.63015 * 17 16 14 34 34 H 1.08999 * 109.54842 * 236.41337 * 17 16 14 35 35 H 1.08999 * 109.50855 * 285.79944 * 18 17 16 36 36 H 1.09007 * 109.50684 * 165.66363 * 18 17 16 37 37 H 0.96999 * 120.00061 * 5.27292 * 22 21 20 38 38 H 0.97005 * 120.00084 * 185.27390 * 22 21 20 39 39 H 1.07994 * 126.08234 * 180.14406 * 24 20 19 40 40 H 1.09010 * 109.92573 * 103.73554 * 27 16 14 41 41 H 1.09001 * 109.93269 * 342.61692 * 27 16 14 42 42 H 1.08004 * 120.19852 * 179.70395 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0711 -1.2217 0.1899 9 6 1.3232 -2.4238 -0.2507 10 6 1.7733 -3.6242 0.3310 11 6 1.1047 -4.8027 0.0851 12 6 -0.0111 -4.8173 -0.7331 13 6 -0.4731 -3.6346 -1.3199 14 6 -1.6660 -3.6589 -2.1936 15 8 -1.7437 -2.8970 -3.1374 16 7 -2.6671 -4.5259 -1.9433 17 6 -3.7844 -4.6912 -2.8885 18 6 -3.7738 -6.1243 -3.4326 19 7 -3.5801 -7.0601 -2.3234 20 6 -3.8491 -8.4102 -2.3104 21 6 -4.4044 -9.2085 -3.4096 22 7 -4.5887 -8.6496 -4.6221 23 8 -4.6985 -10.3749 -3.2263 24 6 -3.4944 -8.8586 -1.0674 25 7 -3.0370 -7.8155 -0.3716 26 6 -3.0884 -6.7405 -1.1087 27 6 -2.6770 -5.3393 -0.7138 28 6 0.1937 -2.4373 -1.0860 29 1 -0.4850 0.8400 0.0004 30 1 2.6442 -3.6209 0.9698 31 1 1.4538 -5.7212 0.5331 32 1 -0.5285 -5.7469 -0.9191 33 1 -3.6707 -3.9874 -3.7130 34 1 -4.7274 -4.5034 -2.3750 35 1 -2.9599 -6.2355 -4.1491 36 1 -4.7237 -6.3340 -3.9242 37 1 -4.2843 -7.7441 -4.7901 38 1 -5.0258 -9.1529 -5.3268 39 1 -3.5709 -9.8757 -0.7124 40 1 -3.3933 -4.9284 -0.0022 41 1 -1.6812 -5.3554 -0.2708 42 1 -0.1567 -1.5225 -1.5408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275474968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = 40.176090 kcal Electronic energy + Delta-G solvation = -29047.800112 eV Core-core repulsion = 24994.515501 eV Total energy + Delta-G solvation = -4053.284611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.71113 -39.84552 -39.23950 -37.36329 -36.35272 -34.87587 -33.88499 -33.30915 -30.89819 -30.53228 -29.67427 -29.44670 -26.51417 -25.60895 -24.48459 -23.49842 -22.01837 -21.25268 -20.83574 -20.11396 -18.97011 -18.03061 -17.60103 -17.36964 -16.81438 -16.41916 -16.04698 -15.73578 -15.30115 -15.12485 -15.01976 -14.58025 -14.45566 -14.18473 -13.99086 -13.43923 -13.38654 -12.98191 -12.87046 -12.77328 -12.52662 -12.32381 -11.95007 -11.62902 -11.26866 -11.20232 -10.80259 -10.63801 -10.56640 -10.26237 -10.20543 -10.16984 -9.96920 -9.78574 -9.38694 -9.28332 -8.91961 -8.58280 -7.76761 -7.57524 -6.88243 -4.54826 1.04325 2.01105 2.15796 2.58572 2.70122 2.91000 3.01748 3.03271 3.06107 3.09218 3.15505 3.42770 3.84875 3.98072 4.06459 4.26107 4.45910 4.49582 4.54397 4.91279 5.04108 5.24419 5.26103 5.38836 5.45086 5.48560 5.66272 5.79750 5.98630 6.10993 6.24436 6.31599 6.41499 6.58249 6.69263 6.84100 6.85593 6.87003 7.08203 7.23526 7.33973 7.56162 7.65409 7.75311 7.82545 7.83449 8.02634 8.36736 8.46595 8.68288 8.71324 10.07688 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002766 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.792301 B =10120.849540 C =10816.607736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.104 3.896 10 C -0.204 4.204 11 C -0.091 4.091 12 C -0.231 4.231 13 C -0.129 4.129 14 C 0.582 3.418 15 O -0.536 6.536 16 N -0.625 5.625 17 C 0.100 3.900 18 C 0.075 3.925 19 N -0.439 5.439 20 C -0.107 4.107 21 C 0.606 3.394 22 N -0.860 5.860 23 O -0.530 6.530 24 C 0.077 3.923 25 N -0.484 5.484 26 C 0.242 3.758 27 C 0.153 3.847 28 C -0.086 4.086 29 H 0.284 0.716 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.397 0.603 38 H 0.407 0.593 39 H 0.186 0.814 40 H 0.098 0.902 41 H 0.169 0.831 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 -8.704 -6.146 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.224 4.224 11 C -0.109 4.109 12 C -0.251 4.251 13 C -0.132 4.132 14 C 0.375 3.625 15 O -0.412 6.412 16 N -0.361 5.361 17 C -0.024 4.024 18 C -0.049 4.049 19 N -0.123 5.123 20 C -0.221 4.221 21 C 0.392 3.608 22 N -0.427 5.427 23 O -0.406 6.406 24 C -0.078 4.078 25 N -0.202 5.202 26 C -0.022 4.022 27 C 0.030 3.970 28 C -0.106 4.106 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.228 0.772 38 H 0.238 0.762 39 H 0.203 0.797 40 H 0.116 0.884 41 H 0.186 0.814 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.258 -8.736 -5.737 13.962 hybrid contribution -0.206 0.874 -1.251 1.540 sum -9.464 -7.862 -6.987 14.149 Atomic orbital electron populations 1.69731 1.07517 1.29773 1.35091 1.25928 0.94880 1.01481 0.92196 0.86267 0.80007 0.79905 0.80010 1.18746 1.20242 1.18915 1.19568 0.96347 0.90336 1.42648 0.90022 1.17594 0.91094 0.92571 0.88559 1.21213 1.03101 0.93320 1.04730 1.20504 0.95420 0.96908 0.98107 1.20534 1.01809 0.95591 1.07118 1.19335 0.96051 0.96029 1.01772 1.18957 0.81883 0.77536 0.84133 1.90702 1.79785 1.39406 1.31322 1.48100 1.23416 1.42829 1.21716 1.21810 0.90969 0.93620 0.95962 1.22674 1.03610 0.89909 0.88681 1.45310 1.46949 1.07130 1.12893 1.20910 1.17512 0.83837 0.99842 1.16792 0.76807 0.85827 0.81379 1.44095 1.64435 1.20151 1.14020 1.90886 1.51369 1.15525 1.82862 1.22730 0.97552 0.98883 0.88666 1.70053 1.21387 0.97340 1.31440 1.23908 0.98621 0.97781 0.81861 1.21528 1.08642 0.79920 0.86956 1.21508 0.96421 0.95403 0.97241 0.90486 0.88305 0.88430 0.87528 0.86155 0.89906 0.88593 0.87976 0.77156 0.76189 0.79706 0.88421 0.81412 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.74 11.02 55.55 0.61 -19.13 16 2 C 0.07 1.75 5.22 -17.34 -0.09 1.66 16 3 Si 0.91 17.96 29.58 -169.99 -5.03 12.94 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.43 9.05 -37.73 -0.34 -11.77 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 9 C 0.10 2.58 5.52 -106.87 -0.59 1.99 16 10 C -0.20 -4.52 9.78 -38.81 -0.38 -4.90 16 11 C -0.09 -1.82 10.01 -39.72 -0.40 -2.21 16 12 C -0.23 -4.51 7.54 -38.92 -0.29 -4.80 16 13 C -0.13 -2.76 5.49 -105.04 -0.58 -3.34 16 14 C 0.58 11.26 7.40 -12.31 -0.09 11.17 16 15 O -0.54 -11.63 16.24 5.33 0.09 -11.55 16 16 N -0.63 -9.21 2.98 -174.25 -0.52 -9.73 16 17 C 0.10 1.06 6.44 -3.47 -0.02 1.04 16 18 C 0.07 0.64 5.42 -3.94 -0.02 0.62 16 19 N -0.44 -5.11 3.15 -109.71 -0.35 -5.46 16 20 C -0.11 -1.32 6.92 -82.31 -0.57 -1.89 16 21 C 0.61 7.00 8.06 -12.82 -0.10 6.90 16 22 N -0.86 -6.23 8.67 30.28 0.26 -5.97 16 23 O -0.53 -7.80 17.75 5.21 0.09 -7.71 16 24 C 0.08 1.02 11.67 -17.35 -0.20 0.82 16 25 N -0.48 -7.13 11.20 -10.32 -0.12 -7.25 16 26 C 0.24 3.32 7.70 -155.32 -1.20 2.12 16 27 C 0.15 2.14 5.96 -4.40 -0.03 2.12 16 28 C -0.09 -2.10 8.19 -38.44 -0.32 -2.42 16 29 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 30 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.11 1.87 5.67 -52.49 -0.30 1.57 16 33 H 0.12 1.29 7.04 -51.93 -0.37 0.92 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.77 7.98 -51.93 -0.41 0.36 16 36 H 0.10 0.54 6.64 -51.93 -0.34 0.19 16 37 H 0.40 2.17 5.07 -40.82 -0.21 1.96 16 38 H 0.41 2.22 8.93 -40.82 -0.36 1.85 16 39 H 0.19 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.10 1.24 8.14 -51.92 -0.42 0.81 16 41 H 0.17 2.64 3.22 -51.96 -0.17 2.47 16 42 H 0.13 3.41 6.30 -52.48 -0.33 3.08 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -31.04 349.76 -9.05 -40.09 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.15 Total: 11.39 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -5.22 Total: -2.90 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.11 Total: -47.53 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.18 Total: -19.26 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.04 -9.05 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275474968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.271 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds