Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48502 * 109.47058 * 240.00162 * 3 2 1 5 5 H 1.48504 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46874 * 120.00106 * 3 2 1 7 7 C 1.39937 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99940 * 191.74936 * 7 2 1 9 9 C 1.41437 * 119.99897 * 11.75678 * 7 2 1 10 10 C 1.40781 * 120.17928 * 210.23617 * 9 7 2 11 11 C 1.37712 * 120.04289 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.40826 * 0.02562 * 11 10 9 13 13 C 1.39876 * 120.36108 * 359.97438 * 12 11 10 14 14 C 1.47883 * 120.02600 * 179.97438 * 13 12 11 15 15 O 1.21541 * 120.00492 * 213.30556 * 14 13 12 16 16 N 1.34780 * 119.99691 * 33.31016 * 14 13 12 17 17 C 1.47282 * 121.10078 * 187.79702 * 16 14 13 18 18 C 1.53289 * 109.11463 * 116.50891 * 17 16 14 19 19 N 1.46405 * 109.24450 * 45.73286 * 18 17 16 20 20 C 1.37671 * 127.45914 * 161.72039 * 19 18 17 21 21 C 1.46762 * 126.88833 * 359.37614 * 20 19 18 22 22 N 1.34777 * 119.99944 * 6.20482 * 21 20 19 23 23 O 1.21680 * 120.00160 * 186.21152 * 21 20 19 24 24 C 1.36815 * 106.22298 * 179.34765 * 20 19 18 25 25 N 1.33479 * 107.83791 * 0.14649 * 24 20 19 26 26 C 1.30447 * 109.62881 * 0.12361 * 25 24 20 27 27 C 1.47429 * 120.98442 * 7.76561 * 16 14 13 28 28 C 1.39032 * 119.94726 * 0.28198 * 13 12 11 29 29 H 0.96996 * 119.99901 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.97734 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.79305 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.81543 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.49859 * 356.63015 * 17 16 14 34 34 H 1.08999 * 109.54842 * 236.41337 * 17 16 14 35 35 H 1.08999 * 109.50855 * 285.79944 * 18 17 16 36 36 H 1.09007 * 109.50684 * 165.66363 * 18 17 16 37 37 H 0.96999 * 120.00061 * 5.27292 * 22 21 20 38 38 H 0.97005 * 120.00084 * 185.27390 * 22 21 20 39 39 H 1.07994 * 126.08234 * 180.14406 * 24 20 19 40 40 H 1.09010 * 109.92573 * 103.73554 * 27 16 14 41 41 H 1.09001 * 109.93269 * 342.61692 * 27 16 14 42 42 H 1.08004 * 120.19852 * 179.70395 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0711 -1.2217 0.1899 9 6 1.3232 -2.4238 -0.2507 10 6 1.7733 -3.6242 0.3310 11 6 1.1047 -4.8027 0.0851 12 6 -0.0111 -4.8173 -0.7331 13 6 -0.4731 -3.6346 -1.3199 14 6 -1.6660 -3.6589 -2.1936 15 8 -1.7437 -2.8970 -3.1374 16 7 -2.6671 -4.5259 -1.9433 17 6 -3.7844 -4.6912 -2.8885 18 6 -3.7738 -6.1243 -3.4326 19 7 -3.5801 -7.0601 -2.3234 20 6 -3.8491 -8.4102 -2.3104 21 6 -4.4044 -9.2085 -3.4096 22 7 -4.5887 -8.6496 -4.6221 23 8 -4.6985 -10.3749 -3.2263 24 6 -3.4944 -8.8586 -1.0674 25 7 -3.0370 -7.8155 -0.3716 26 6 -3.0884 -6.7405 -1.1087 27 6 -2.6770 -5.3393 -0.7138 28 6 0.1937 -2.4373 -1.0860 29 1 -0.4850 0.8400 0.0004 30 1 2.6442 -3.6209 0.9698 31 1 1.4538 -5.7212 0.5331 32 1 -0.5285 -5.7469 -0.9191 33 1 -3.6707 -3.9874 -3.7130 34 1 -4.7274 -4.5034 -2.3750 35 1 -2.9599 -6.2355 -4.1491 36 1 -4.7237 -6.3340 -3.9242 37 1 -4.2843 -7.7441 -4.7901 38 1 -5.0258 -9.1529 -5.3268 39 1 -3.5709 -9.8757 -0.7124 40 1 -3.3933 -4.9284 -0.0022 41 1 -1.6812 -5.3554 -0.2708 42 1 -0.1567 -1.5225 -1.5408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275474968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = 18.973803 kcal Electronic energy + Delta-G solvation = -29048.719512 eV Core-core repulsion = 24994.515501 eV Total energy + Delta-G solvation = -4054.204011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.69648 -41.24750 -40.19646 -38.98367 -37.59060 -35.99837 -35.43966 -34.28074 -32.32598 -31.64972 -31.33050 -30.67113 -27.66995 -27.30507 -25.59357 -24.50020 -23.41240 -22.92986 -21.77133 -21.32257 -20.24127 -19.33502 -18.82488 -18.16601 -17.82862 -17.73047 -17.50080 -16.96060 -16.69058 -16.45356 -16.33063 -15.63426 -15.57166 -15.35631 -15.15191 -14.84016 -14.64036 -14.41920 -14.28931 -14.17495 -13.73361 -13.52463 -13.31553 -12.93639 -12.84173 -12.80412 -12.31469 -12.13027 -11.98801 -11.76104 -11.46598 -11.20568 -11.10798 -10.95576 -10.93326 -10.83065 -10.13562 -9.65635 -9.45184 -9.30010 -8.63843 -6.40147 0.08678 0.35582 0.97530 1.19673 1.39225 1.47261 1.50696 1.61008 1.74240 1.86984 2.17574 2.21035 2.34797 2.73349 2.99678 3.22918 3.36283 3.56568 3.63942 3.78159 3.91456 4.12262 4.24366 4.30305 4.35770 4.45138 4.48871 4.55395 4.60287 4.79707 4.86296 5.04585 5.12502 5.18838 5.31544 5.40876 5.49724 5.68764 5.73721 5.80422 5.90022 5.97914 6.08969 6.11764 6.27843 6.57149 6.76156 6.88980 6.90855 6.99794 7.05483 8.33816 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002766 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.792301 B =10120.849540 C =10816.607736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.082 0.918 9 C 0.074 3.926 10 C -0.209 4.209 11 C -0.092 4.092 12 C -0.207 4.207 13 C -0.134 4.134 14 C 0.581 3.419 15 O -0.567 6.567 16 N -0.615 5.615 17 C 0.095 3.905 18 C 0.073 3.927 19 N -0.430 5.430 20 C -0.099 4.099 21 C 0.608 3.392 22 N -0.835 5.835 23 O -0.566 6.566 24 C 0.057 3.943 25 N -0.504 5.504 26 C 0.228 3.772 27 C 0.158 3.842 28 C -0.117 4.117 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.408 0.592 38 H 0.419 0.581 39 H 0.195 0.805 40 H 0.112 0.888 41 H 0.151 0.849 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 -10.173 -7.125 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.100 0.900 9 C 0.072 3.928 10 C -0.229 4.229 11 C -0.109 4.109 12 C -0.226 4.226 13 C -0.137 4.137 14 C 0.373 3.627 15 O -0.446 6.446 16 N -0.348 5.348 17 C -0.027 4.027 18 C -0.049 4.049 19 N -0.114 5.114 20 C -0.214 4.214 21 C 0.393 3.607 22 N -0.403 5.403 23 O -0.444 6.444 24 C -0.098 4.098 25 N -0.223 5.223 26 C -0.036 4.036 27 C 0.034 3.966 28 C -0.137 4.137 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.161 0.839 37 H 0.242 0.758 38 H 0.253 0.747 39 H 0.212 0.788 40 H 0.130 0.870 41 H 0.168 0.832 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.405 -10.217 -6.747 16.068 hybrid contribution 0.029 1.106 -0.988 1.483 sum -10.376 -9.111 -7.736 15.827 Atomic orbital electron populations 1.69817 1.08872 1.30535 1.36561 1.26731 0.95566 1.04516 0.91393 0.85256 0.78696 0.75765 0.80070 1.18683 1.19586 1.18026 1.19818 0.96601 0.91489 1.44826 0.90004 1.17912 0.91816 0.93708 0.89358 1.21452 1.03530 0.93384 1.04542 1.20898 0.94907 0.97475 0.97667 1.20874 1.00917 0.95827 1.04972 1.19614 0.96795 0.95629 1.01703 1.18618 0.82377 0.78243 0.83446 1.90682 1.80532 1.40876 1.32558 1.47973 1.23116 1.41268 1.22473 1.22137 0.90071 0.95119 0.95416 1.22936 1.06372 0.87761 0.87840 1.45393 1.45879 1.07226 1.12883 1.21034 1.16561 0.83989 0.99843 1.16710 0.76601 0.85225 0.82162 1.43876 1.62997 1.20577 1.12842 1.90881 1.53068 1.16956 1.83528 1.23000 0.98255 0.99217 0.89312 1.69984 1.21937 0.97934 1.32409 1.23639 0.99911 0.97210 0.82792 1.21365 1.08038 0.80427 0.86723 1.21295 0.97944 0.95571 0.98901 0.90299 0.87294 0.84847 0.84859 0.86049 0.87662 0.87392 0.83902 0.75793 0.74709 0.78819 0.86981 0.83214 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.35 11.02 21.82 0.24 -43.11 16 2 C 0.03 1.60 5.22 85.25 0.45 2.04 16 3 Si 0.98 37.92 29.58 68.60 2.03 39.95 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.50 -25.89 9.05 23.47 0.21 -25.68 16 8 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 9 C 0.07 3.82 5.52 -21.32 -0.12 3.70 16 10 C -0.21 -9.35 9.78 22.77 0.22 -9.12 16 11 C -0.09 -3.51 10.01 22.18 0.22 -3.29 16 12 C -0.21 -7.81 7.54 22.70 0.17 -7.63 16 13 C -0.13 -5.82 5.49 -20.14 -0.11 -5.93 16 14 C 0.58 22.38 7.40 86.80 0.64 23.02 16 15 O -0.57 -24.96 16.24 -3.84 -0.06 -25.02 16 16 N -0.61 -17.03 2.98 -823.48 -2.45 -19.48 16 17 C 0.09 1.72 6.44 86.33 0.56 2.28 16 18 C 0.07 0.95 5.42 86.49 0.47 1.42 16 19 N -0.43 -8.63 3.15 -501.01 -1.58 -10.21 16 20 C -0.10 -2.17 6.92 40.12 0.28 -1.90 16 21 C 0.61 12.25 8.06 86.47 0.70 12.95 16 22 N -0.84 -8.81 8.67 -176.33 -1.53 -10.34 16 23 O -0.57 -15.51 17.75 -4.28 -0.08 -15.58 16 24 C 0.06 1.42 11.67 84.11 0.98 2.40 16 25 N -0.50 -13.93 11.20 -186.56 -2.09 -16.02 16 26 C 0.23 5.72 7.70 138.38 1.07 6.78 16 27 C 0.16 4.11 5.96 85.64 0.51 4.62 16 28 C -0.12 -5.99 8.19 23.01 0.19 -5.81 16 29 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 30 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.13 4.34 5.67 -2.91 -0.02 4.33 16 33 H 0.12 2.30 7.04 -2.39 -0.02 2.28 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.26 7.98 -2.39 -0.02 1.24 16 36 H 0.14 0.74 6.64 -2.38 -0.02 0.73 16 37 H 0.41 2.54 5.07 -92.71 -0.47 2.07 16 38 H 0.42 2.95 8.93 -92.70 -0.83 2.12 16 39 H 0.19 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.15 4.45 3.22 -2.42 -0.01 4.44 16 42 H 0.10 5.54 6.30 -2.91 -0.02 5.52 16 Total: -1.00 -71.40 349.76 0.74 -70.66 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.17 Total: 29.30 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.43 Total: -0.15 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -7.41 Total: -99.16 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.14 Total: -40.60 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -71.40 0.74 -70.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275474968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.630 kcal (2) G-P(sol) polarization free energy of solvation -71.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds