Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37913 * 120.06441 * 2 1 4 4 C 1.38492 * 120.13164 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 119.87036 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.26084 * 359.97438 * 4 3 2 7 7 C 1.37870 * 120.13395 * 0.02562 * 6 4 3 8 8 C 1.39597 * 120.06754 * 179.97438 * 2 1 3 9 9 C 1.47783 * 120.13048 * 359.74406 * 8 2 1 10 10 O 1.21564 * 120.00072 * 354.00218 * 9 8 2 11 11 N 1.34772 * 120.00192 * 174.00077 * 9 8 2 12 12 C 1.46497 * 120.00330 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47500 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.46869 * 65.00200 * 13 12 11 15 15 C 1.42900 * 114.00189 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47215 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47242 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.47336 * 180.02562 * 17 16 15 19 19 C 1.36936 * 120.00089 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00021 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99882 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99678 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47182 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46972 * 119.99698 * 23 21 19 26 26 H 1.48502 * 109.47050 * 239.99465 * 23 21 19 27 27 H 1.09002 * 109.47245 * 263.48401 * 1 2 3 28 28 H 1.08999 * 109.47582 * 23.48592 * 1 2 3 29 29 H 1.09001 * 109.47202 * 143.48405 * 1 2 3 30 30 H 1.08000 * 119.93949 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.92991 * 179.97438 * 6 4 3 32 32 H 1.08002 * 120.06274 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99957 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47269 * 300.00329 * 12 11 9 35 35 H 1.09008 * 109.47127 * 59.99796 * 12 11 9 36 36 H 1.09000 * 109.47290 * 184.99591 * 13 12 11 37 37 H 1.08998 * 109.47220 * 305.00362 * 13 12 11 38 38 H 1.08992 * 109.46878 * 300.00328 * 15 14 13 39 39 H 1.09003 * 109.46663 * 60.00170 * 15 14 13 40 40 H 1.08997 * 109.47188 * 300.00427 * 16 15 14 41 41 H 1.09001 * 109.47055 * 59.99964 * 16 15 14 42 42 H 1.09006 * 109.46880 * 300.00179 * 17 16 15 43 43 H 1.09001 * 109.47368 * 59.99858 * 17 16 15 44 44 H 0.96999 * 119.99583 * 359.97438 * 18 17 16 45 45 H 0.96998 * 119.99993 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1936 0.0000 4 6 3.5828 1.1952 0.0005 5 17 4.4456 2.7016 -0.0001 6 6 4.2824 -0.0006 0.0016 7 6 3.6027 -1.2001 0.0016 8 6 2.2064 -1.2081 0.0005 9 6 1.4719 -2.4905 0.0068 10 8 0.2617 -2.4973 0.1215 11 7 2.1438 -3.6525 -0.1146 12 6 1.4156 -4.9237 -0.1090 13 6 2.4064 -6.0797 -0.2610 14 8 3.2607 -6.1283 0.8835 15 6 4.2293 -7.1782 0.8416 16 6 5.0841 -7.1343 2.1098 17 6 6.1215 -8.2580 2.0646 18 7 6.9396 -8.2164 3.2792 19 6 7.9411 -9.1323 3.4619 20 1 8.1275 -9.8856 2.7107 21 6 8.7166 -9.0926 4.6125 22 7 8.4897 -8.1743 5.5276 23 14 10.0822 -10.3425 4.8620 24 1 10.1322 -11.2604 3.6957 25 1 11.3821 -9.6362 4.9914 26 1 9.8184 -11.1240 6.0968 27 1 -0.3634 -0.1166 1.0210 28 1 -0.3634 0.9425 -0.4095 29 1 -0.3634 -0.8259 -0.6115 30 1 1.6580 2.1289 -0.0004 31 1 5.3624 0.0069 0.0016 32 1 4.1492 -2.1317 0.0029 33 1 3.1094 -3.6471 -0.2066 34 1 0.8756 -5.0289 0.8320 35 1 0.7080 -4.9408 -0.9379 36 1 1.8591 -7.0185 -0.3459 37 1 3.0078 -5.9273 -1.1571 38 1 3.7202 -8.1398 0.7792 39 1 4.8685 -7.0480 -0.0317 40 1 5.5932 -6.1726 2.1717 41 1 4.4451 -7.2641 2.9833 42 1 5.6127 -9.2200 2.0024 43 1 6.7604 -8.1278 1.1911 44 1 6.7724 -7.5396 3.9537 45 1 9.0319 -8.1463 6.3315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277608041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -83.108684 kcal Electronic energy + Delta-G solvation = -25554.720475 eV Core-core repulsion = 21597.197329 eV Total energy + Delta-G solvation = -3957.523146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51183 -39.70086 -39.04636 -37.52038 -37.04628 -36.00505 -34.17307 -33.62218 -32.54706 -31.57190 -29.97507 -28.07534 -26.79031 -25.03014 -24.27769 -23.68159 -22.56819 -22.24835 -21.67276 -19.17305 -18.91599 -17.83272 -17.64378 -17.28323 -16.99062 -16.64466 -16.34175 -16.20745 -16.03618 -15.49529 -15.30998 -15.15551 -14.81168 -14.78144 -14.37589 -14.26432 -13.95154 -13.65091 -13.36217 -13.33347 -13.18502 -13.14969 -12.81580 -12.58929 -12.49797 -12.37777 -12.32792 -12.05524 -11.99766 -11.92745 -11.87801 -11.74177 -10.95862 -10.80342 -10.52134 -10.21902 -10.00697 -9.72547 -9.02586 -7.96512 -5.26428 -0.42732 0.16796 1.00031 1.47844 1.49030 1.59261 1.68339 2.10077 2.50503 2.61736 2.67307 3.37476 3.61486 3.63470 3.70573 3.86631 4.05622 4.06933 4.10045 4.19105 4.22714 4.37099 4.39991 4.43435 4.54020 4.63247 4.66991 4.74495 4.76391 4.77830 4.81109 4.82840 4.89644 4.99878 5.08641 5.13252 5.33243 5.34538 5.35679 5.48568 5.49144 5.61871 6.23654 6.27943 6.44795 7.12413 7.31616 8.07414 8.29750 9.27536 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.001839 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.763749 B =15221.385956 C =17374.991823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.022 4.022 3 C -0.124 4.124 4 C -0.012 4.012 5 Cl -0.061 7.061 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.152 4.152 9 C 0.554 3.446 10 O -0.562 6.562 11 N -0.712 5.712 12 C 0.124 3.876 13 C 0.048 3.952 14 O -0.407 6.407 15 C 0.078 3.922 16 C -0.114 4.114 17 C 0.154 3.846 18 N -0.750 5.750 19 C -0.247 4.247 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.029 0.971 44 H 0.373 0.627 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 18.448 -18.876 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.023 4.023 3 C -0.143 4.143 4 C -0.039 4.039 5 Cl -0.032 7.032 6 C -0.147 4.147 7 C -0.083 4.083 8 C -0.156 4.156 9 C 0.343 3.657 10 O -0.443 6.443 11 N -0.364 5.364 12 C 0.001 3.999 13 C -0.028 4.028 14 O -0.327 6.327 15 C 0.001 3.999 16 C -0.152 4.152 17 C 0.028 3.972 18 N -0.393 5.393 19 C -0.379 4.379 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.221 1.221 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.205 0.795 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.381 18.495 -18.726 31.001 hybrid contribution 1.325 -0.360 0.700 1.541 sum -15.056 18.135 -18.026 29.673 Atomic orbital electron populations 1.21033 0.89100 1.03725 1.03369 1.20136 0.97499 0.91004 0.93682 1.21114 0.91959 0.99039 1.02175 1.21339 0.92814 0.87872 1.01897 1.98397 1.76741 1.31455 1.96578 1.21251 1.01873 0.90103 1.01424 1.21492 0.92303 0.99263 0.95236 1.19944 0.94296 0.93104 1.08210 1.18375 0.86824 0.84331 0.76161 1.90724 1.14824 1.87638 1.51142 1.45857 1.11771 1.05350 1.73423 1.21467 0.94279 0.81079 1.03108 1.22886 0.92543 0.98464 0.88924 1.87886 1.48203 1.53345 1.43258 1.22309 0.89984 0.90252 0.97328 1.21479 0.96689 0.98919 0.98126 1.20684 0.91460 0.96184 0.88877 1.42621 1.38396 1.37165 1.21136 1.19717 1.07841 1.07800 1.02495 0.90253 1.25655 1.02978 1.01416 0.97119 1.69832 1.43729 1.37936 1.10709 0.85017 0.78481 0.78260 0.77651 1.18750 1.21938 1.22062 0.91027 0.90095 0.89974 0.82656 0.82558 0.82671 0.75071 0.92022 0.88508 0.89802 0.90511 0.92036 0.91382 0.91970 0.92632 0.95727 0.95328 0.79550 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.72 71.24 0.62 -1.32 16 2 C -0.02 -0.38 5.91 -19.61 -0.12 -0.50 16 3 C -0.12 -1.84 9.44 22.25 0.21 -1.63 16 4 C -0.01 -0.18 6.33 22.40 0.14 -0.04 16 5 Cl -0.06 -0.87 28.95 -2.72 -0.08 -0.95 16 6 C -0.13 -1.79 9.81 22.25 0.22 -1.57 16 7 C -0.06 -0.93 9.52 22.52 0.21 -0.71 16 8 C -0.15 -2.77 5.87 -20.09 -0.12 -2.89 16 9 C 0.55 11.59 7.70 86.77 0.67 12.25 16 10 O -0.56 -14.76 13.34 -3.92 -0.05 -14.81 16 11 N -0.71 -11.90 5.45 -466.03 -2.54 -14.44 16 12 C 0.12 1.95 6.06 86.38 0.52 2.47 16 13 C 0.05 0.66 6.07 71.98 0.44 1.10 16 14 O -0.41 -8.74 10.29 -148.98 -1.53 -10.27 16 15 C 0.08 1.73 5.94 71.98 0.43 2.15 16 16 C -0.11 -3.55 5.70 30.59 0.17 -3.38 16 17 C 0.15 5.93 6.26 86.38 0.54 6.47 16 18 N -0.75 -38.51 5.60 -343.44 -1.92 -40.43 16 19 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 22 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 23 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 0.95 8.04 -2.39 -0.02 0.93 16 29 H 0.08 1.67 5.86 -2.39 -0.01 1.65 16 30 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.16 1.58 6.45 -2.91 -0.02 1.56 16 33 H 0.41 5.46 6.54 -92.71 -0.61 4.85 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.37 20.50 7.67 -92.71 -0.71 19.79 16 45 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -71.23 392.78 1.13 -70.10 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.30 Total: 27.28 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.25 Total: -4.72 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -4.18 Total: -114.62 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.59 Total: -25.08 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -71.23 1.13 -70.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277608041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.009 kcal (2) G-P(sol) polarization free energy of solvation -71.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds