Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47074 * 35.00312 * 14 13 12 16 16 C 1.52996 * 109.47518 * 275.00138 * 14 13 12 17 17 O 1.42900 * 109.46993 * 295.00041 * 16 14 13 18 18 C 1.53003 * 109.47236 * 154.99590 * 14 13 12 19 19 N 1.46498 * 109.47370 * 305.00500 * 18 14 13 20 20 C 1.34779 * 120.00115 * 179.97438 * 19 18 14 21 21 O 1.21533 * 119.99873 * 359.97438 * 20 19 18 22 22 C 1.47995 * 119.99961 * 179.97438 * 20 19 18 23 23 N 1.32812 * 119.75153 * 0.02562 * 22 20 19 24 24 C 1.31434 * 121.66376 * 180.02562 * 23 22 20 25 25 C 1.38674 * 120.98086 * 359.97438 * 24 23 22 26 26 C 1.38447 * 119.40193 * 0.02562 * 25 24 23 27 27 C 1.38968 * 118.46179 * 359.72975 * 26 25 24 28 28 F 1.35098 * 120.50499 * 180.27916 * 27 26 25 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 34 34 H 1.09003 * 109.47323 * 54.99778 * 16 14 13 35 35 H 1.09002 * 109.47449 * 175.00109 * 16 14 13 36 36 H 0.96697 * 114.00205 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46720 * 65.00010 * 18 14 13 38 38 H 1.08994 * 109.47381 * 185.00037 * 18 14 13 39 39 H 0.96999 * 119.99750 * 359.97438 * 19 18 14 40 40 H 1.08001 * 119.50750 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.30003 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.77509 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 1 0.5817 -7.1878 -0.5885 16 6 1.1509 -7.6619 1.4344 17 8 2.3551 -7.8844 2.1710 18 6 2.4007 -8.3413 -0.6197 19 7 2.8297 -7.9104 -1.9525 20 6 3.6373 -8.6995 -2.6885 21 8 4.0100 -9.7684 -2.2461 22 6 4.0701 -8.2644 -4.0351 23 7 3.6602 -7.0952 -4.5134 24 6 4.0211 -6.6721 -5.7043 25 6 4.8499 -7.4358 -6.5123 26 6 5.3023 -8.6620 -6.0557 27 6 4.9101 -9.0835 -4.7909 28 9 5.3319 -10.2703 -4.3021 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 2.8365 -5.9142 0.7741 34 1 0.5819 -6.8586 1.9023 35 1 0.5545 -8.5743 1.4290 36 1 2.2110 -8.1362 3.0935 37 1 3.2756 -8.4872 0.0140 38 1 1.8503 -9.2785 -0.7005 39 1 2.5325 -7.0571 -2.3053 40 1 3.6668 -5.7154 -6.0589 41 1 5.1400 -7.0772 -7.4889 42 1 5.9490 -9.2747 -6.6663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278172096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -121.094212 kcal Electronic energy + Delta-G solvation = -28905.211392 eV Core-core repulsion = 24414.164351 eV Total energy + Delta-G solvation = -4491.047041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.10944 -40.60183 -39.23131 -38.46341 -37.59506 -35.43390 -34.13661 -33.65792 -32.85307 -31.38898 -31.21378 -29.96404 -26.37984 -26.15641 -24.60792 -23.91788 -23.56146 -20.88383 -20.80696 -19.32259 -18.30157 -17.93325 -17.80877 -17.58568 -17.31933 -16.32850 -16.17566 -15.77430 -15.49826 -15.44978 -15.09165 -14.74360 -14.45476 -14.34144 -14.19619 -13.80849 -13.78992 -13.63266 -13.43499 -13.32071 -13.14558 -12.68474 -12.33968 -12.06674 -11.80702 -11.60307 -11.46653 -11.26377 -11.02275 -10.44503 -10.42832 -10.30673 -10.21999 -10.16342 -9.77114 -9.49654 -9.32082 -8.86928 -8.47485 -8.08085 -7.95641 -6.41747 -3.82314 0.25071 0.70540 2.62142 3.02046 3.20034 3.25552 3.30160 3.54445 3.73785 3.90482 3.91692 3.96665 4.16466 4.31250 4.40780 4.47100 4.52419 4.75745 4.91652 5.03066 5.15211 5.20717 5.23835 5.30603 5.31776 5.41269 5.48115 5.55763 5.70373 5.78291 5.95507 6.05532 6.20206 6.26512 6.51539 7.15753 7.30931 7.46316 7.55198 7.67943 7.69538 8.06434 8.24414 8.61737 9.18315 9.54557 10.06483 10.76005 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.002839 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.823217 B = 9859.071791 C =12143.028028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.580 6.580 12 C 0.048 3.952 13 N -0.658 5.658 14 C 0.075 3.925 15 H 0.095 0.905 16 C 0.047 3.953 17 O -0.565 6.565 18 C 0.136 3.864 19 N -0.687 5.687 20 C 0.564 3.436 21 O -0.533 6.533 22 C 0.051 3.949 23 N -0.424 5.424 24 C 0.091 3.909 25 C -0.122 4.122 26 C -0.121 4.121 27 C 0.106 3.894 28 F -0.107 7.107 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.363 0.637 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.380 0.620 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.420 0.580 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -17.228 -8.714 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.292 5.292 14 C -0.036 4.036 15 H 0.113 0.887 16 C -0.033 4.033 17 O -0.370 6.370 18 C 0.011 3.989 19 N -0.338 5.338 20 C 0.348 3.652 21 O -0.410 6.410 22 C -0.088 4.088 23 N -0.134 5.134 24 C -0.070 4.070 25 C -0.142 4.142 26 C -0.147 4.147 27 C 0.083 3.917 28 F -0.085 7.085 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.258 0.742 40 H 0.190 0.810 41 H 0.169 0.831 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.731 -17.182 -9.045 19.495 hybrid contribution -0.411 0.520 0.786 1.028 sum 1.321 -16.663 -8.259 18.644 Atomic orbital electron populations 1.69603 1.05919 1.28219 1.50721 1.25244 0.95620 0.99670 0.97366 0.85927 0.78765 0.80501 0.79092 1.19875 1.21008 1.19946 1.19652 0.93340 0.82260 1.47570 0.88005 1.41841 1.09131 1.04571 1.64561 1.19770 0.88396 0.84649 0.84494 1.90546 1.13712 1.86992 1.55073 1.21754 0.94473 0.91218 1.01020 1.60123 1.17856 0.98794 1.52432 1.21987 0.97450 0.90792 0.93409 0.88670 1.22842 0.87175 0.99803 0.93523 1.86498 1.31083 1.92209 1.27230 1.21284 0.99267 0.95520 0.82793 1.45615 1.48304 1.23037 1.16833 1.17630 0.79611 0.84392 0.83559 1.90833 1.56339 1.22409 1.71423 1.21470 0.98644 0.92107 0.96621 1.67715 1.20216 1.11381 1.14123 1.23001 0.94729 1.00264 0.88974 1.22336 0.96569 0.93624 1.01660 1.21709 1.00962 0.97867 0.94212 1.18674 0.96413 0.83339 0.93259 1.91618 1.87347 1.42042 1.87487 0.91860 0.77525 0.93968 0.89554 0.81560 0.92938 0.93058 0.77291 0.90045 0.91370 0.74228 0.80983 0.83140 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C 0.44 10.22 7.82 -10.98 -0.09 10.13 16 11 O -0.58 -15.69 15.78 5.54 0.09 -15.60 16 12 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 13 N -0.66 -10.33 5.32 -107.99 -0.57 -10.91 16 14 C 0.07 0.89 2.57 -67.71 -0.17 0.71 16 15 H 0.10 0.98 7.80 -51.93 -0.41 0.57 16 16 C 0.05 0.46 6.72 37.16 0.25 0.71 16 17 O -0.56 -6.17 12.05 -35.23 -0.42 -6.59 16 18 C 0.14 1.78 5.26 -4.04 -0.02 1.76 16 19 N -0.69 -9.88 5.38 -61.20 -0.33 -10.21 16 20 C 0.56 8.91 7.81 -12.26 -0.10 8.81 16 21 O -0.53 -9.70 15.32 5.34 0.08 -9.62 16 22 C 0.05 0.71 6.75 -82.95 -0.56 0.15 16 23 N -0.42 -5.41 9.54 -9.76 -0.09 -5.50 16 24 C 0.09 0.83 11.18 -17.56 -0.20 0.64 16 25 C -0.12 -0.85 10.11 -39.34 -0.40 -1.24 16 26 C -0.12 -1.01 10.16 -39.23 -0.40 -1.41 16 27 C 0.11 1.30 7.32 -38.82 -0.28 1.02 16 28 F -0.11 -1.50 15.55 2.25 0.04 -1.46 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 31 H 0.04 0.63 7.36 -51.93 -0.38 0.25 16 32 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 33 H 0.36 6.44 7.64 -39.29 -0.30 6.14 16 34 H 0.05 0.51 7.35 -51.93 -0.38 0.13 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.48 9.12 45.56 0.42 2.89 16 37 H 0.08 1.24 7.39 -51.93 -0.38 0.86 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.42 6.13 7.47 -40.82 -0.30 5.82 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -35.66 370.98 -6.33 -41.99 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -4.11 Total: 19.93 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -2.23 Total: 14.15 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.33 Total: -64.30 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.26 Total: -31.81 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.66 -6.33 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278172096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.106 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds