Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47074 * 35.00312 * 14 13 12 16 16 C 1.52996 * 109.47518 * 275.00138 * 14 13 12 17 17 O 1.42900 * 109.46993 * 295.00041 * 16 14 13 18 18 C 1.53003 * 109.47236 * 154.99590 * 14 13 12 19 19 N 1.46498 * 109.47370 * 305.00500 * 18 14 13 20 20 C 1.34779 * 120.00115 * 179.97438 * 19 18 14 21 21 O 1.21533 * 119.99873 * 359.97438 * 20 19 18 22 22 C 1.47995 * 119.99961 * 179.97438 * 20 19 18 23 23 N 1.32812 * 119.75153 * 0.02562 * 22 20 19 24 24 C 1.31434 * 121.66376 * 180.02562 * 23 22 20 25 25 C 1.38674 * 120.98086 * 359.97438 * 24 23 22 26 26 C 1.38447 * 119.40193 * 0.02562 * 25 24 23 27 27 C 1.38968 * 118.46179 * 359.72975 * 26 25 24 28 28 F 1.35098 * 120.50499 * 180.27916 * 27 26 25 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 34 34 H 1.09003 * 109.47323 * 54.99778 * 16 14 13 35 35 H 1.09002 * 109.47449 * 175.00109 * 16 14 13 36 36 H 0.96697 * 114.00205 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46720 * 65.00010 * 18 14 13 38 38 H 1.08994 * 109.47381 * 185.00037 * 18 14 13 39 39 H 0.96999 * 119.99750 * 359.97438 * 19 18 14 40 40 H 1.08001 * 119.50750 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.30003 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.77509 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 1 0.5817 -7.1878 -0.5885 16 6 1.1509 -7.6619 1.4344 17 8 2.3551 -7.8844 2.1710 18 6 2.4007 -8.3413 -0.6197 19 7 2.8297 -7.9104 -1.9525 20 6 3.6373 -8.6995 -2.6885 21 8 4.0100 -9.7684 -2.2461 22 6 4.0701 -8.2644 -4.0351 23 7 3.6602 -7.0952 -4.5134 24 6 4.0211 -6.6721 -5.7043 25 6 4.8499 -7.4358 -6.5123 26 6 5.3023 -8.6620 -6.0557 27 6 4.9101 -9.0835 -4.7909 28 9 5.3319 -10.2703 -4.3021 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 2.8365 -5.9142 0.7741 34 1 0.5819 -6.8586 1.9023 35 1 0.5545 -8.5743 1.4290 36 1 2.2110 -8.1362 3.0935 37 1 3.2756 -8.4872 0.0140 38 1 1.8503 -9.2785 -0.7005 39 1 2.5325 -7.0571 -2.3053 40 1 3.6668 -5.7154 -6.0589 41 1 5.1400 -7.0772 -7.4889 42 1 5.9490 -9.2747 -6.6663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278172096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -153.456511 kcal Electronic energy + Delta-G solvation = -28906.614726 eV Core-core repulsion = 24414.164351 eV Total energy + Delta-G solvation = -4492.450375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.06491 -41.51310 -40.38213 -39.97261 -38.81707 -36.47551 -35.94086 -35.02466 -33.66286 -33.23027 -32.23017 -31.09967 -27.87511 -27.22299 -25.72582 -25.32100 -24.38583 -21.91839 -21.82323 -21.10400 -19.91345 -19.26156 -18.70081 -18.49198 -18.18946 -17.75417 -17.16135 -16.97978 -16.71920 -16.57279 -16.29671 -16.25966 -15.86587 -15.58817 -15.23651 -15.14693 -14.95149 -14.63743 -14.59239 -14.27892 -14.12956 -13.91813 -13.53138 -13.47499 -13.29002 -13.00901 -12.88466 -12.60650 -12.41214 -12.28959 -12.11390 -11.49748 -11.48014 -11.02496 -10.94306 -10.67908 -10.32359 -10.26242 -9.98715 -9.94610 -9.32441 -8.44588 -5.92747 -0.58465 -0.01988 1.40863 1.42776 1.53324 1.61700 2.02116 2.09116 2.30486 2.65446 2.83048 2.92246 3.10192 3.22983 3.35012 3.61607 3.65264 3.69250 3.80308 3.87800 4.05860 4.31325 4.33915 4.37047 4.44812 4.52908 4.57573 4.62986 4.68682 4.77221 4.79798 4.91298 4.97230 5.38858 5.42896 5.49655 5.90316 6.11386 6.34566 6.37493 6.63378 6.67634 6.90394 7.09740 7.15633 7.59657 8.15978 8.72541 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.002839 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.823217 B = 9859.071791 C =12143.028028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.673 5.673 14 C 0.079 3.921 15 H 0.119 0.881 16 C 0.050 3.950 17 O -0.589 6.589 18 C 0.138 3.862 19 N -0.683 5.683 20 C 0.555 3.445 21 O -0.570 6.570 22 C 0.018 3.982 23 N -0.452 5.452 24 C 0.083 3.917 25 C -0.094 4.094 26 C -0.111 4.111 27 C 0.083 3.917 28 F -0.125 7.125 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.349 0.651 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.419 0.581 40 H 0.199 0.801 41 H 0.200 0.800 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -16.744 -10.481 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.305 5.305 14 C -0.032 4.032 15 H 0.137 0.863 16 C -0.030 4.030 17 O -0.398 6.398 18 C 0.014 3.986 19 N -0.333 5.333 20 C 0.341 3.659 21 O -0.451 6.451 22 C -0.120 4.120 23 N -0.163 5.163 24 C -0.078 4.078 25 C -0.114 4.114 26 C -0.137 4.137 27 C 0.060 3.940 28 F -0.104 7.104 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.168 0.832 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.256 0.744 40 H 0.216 0.784 41 H 0.217 0.783 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.869 -16.714 -10.793 19.914 hybrid contribution -0.129 0.375 1.245 1.307 sum 0.740 -16.339 -9.548 18.938 Atomic orbital electron populations 1.69658 1.06720 1.29294 1.50392 1.25976 0.96514 1.02220 0.96346 0.85037 0.77812 0.76896 0.78900 1.19696 1.19447 1.19932 1.19599 0.92621 0.84151 1.49930 0.90582 1.41890 1.09280 1.04592 1.65197 1.20896 0.88222 0.86206 0.82078 1.90516 1.16066 1.87955 1.56483 1.21618 0.93948 0.87822 1.03364 1.60062 1.18244 1.00109 1.52096 1.22084 0.97419 0.88328 0.95332 0.86288 1.22825 0.87018 1.01292 0.91824 1.86466 1.32066 1.92414 1.28828 1.21303 0.98645 0.96712 0.81936 1.45666 1.47881 1.22697 1.17068 1.18100 0.79240 0.84022 0.84578 1.90786 1.57797 1.23879 1.72588 1.21218 1.00893 0.93551 0.96317 1.67647 1.21429 1.11166 1.16094 1.23644 0.94663 1.01420 0.88099 1.22853 0.93780 0.92003 1.02730 1.22151 1.00457 0.98594 0.92529 1.19068 0.97140 0.82901 0.94882 1.91562 1.87654 1.43124 1.88043 0.91319 0.76921 0.91319 0.87076 0.83158 0.92315 0.90316 0.75249 0.92633 0.90052 0.74353 0.78439 0.78268 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.57 -28.77 5.29 -306.98 -1.62 -30.40 16 10 C 0.44 20.48 7.82 87.66 0.69 21.17 16 11 O -0.62 -34.80 15.78 -3.08 -0.05 -34.85 16 12 C 0.06 2.07 5.96 85.56 0.51 2.58 16 13 N -0.67 -20.88 5.32 -495.57 -2.63 -23.52 16 14 C 0.08 1.77 2.57 44.91 0.12 1.89 16 15 H 0.12 2.13 7.80 -2.39 -0.02 2.11 16 16 C 0.05 0.90 6.72 71.98 0.48 1.38 16 17 O -0.59 -12.53 12.05 -148.98 -1.80 -14.32 16 18 C 0.14 3.67 5.26 86.38 0.45 4.13 16 19 N -0.68 -20.39 5.38 -465.83 -2.50 -22.90 16 20 C 0.56 18.55 7.81 86.83 0.68 19.22 16 21 O -0.57 -22.14 15.32 -3.82 -0.06 -22.20 16 22 C 0.02 0.51 6.75 41.90 0.28 0.79 16 23 N -0.45 -11.48 9.54 -184.79 -1.76 -13.24 16 24 C 0.08 1.34 11.18 84.86 0.95 2.29 16 25 C -0.09 -0.96 10.11 22.42 0.23 -0.73 16 26 C -0.11 -1.58 10.16 22.49 0.23 -1.35 16 27 C 0.08 2.06 7.32 22.76 0.17 2.23 16 28 F -0.13 -3.68 15.55 44.97 0.70 -2.98 16 29 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 31 H 0.07 1.88 7.36 -2.39 -0.02 1.86 16 32 H 0.11 3.06 8.06 -2.39 -0.02 3.04 16 33 H 0.35 12.58 7.64 -89.69 -0.69 11.90 16 34 H 0.06 1.00 7.35 -2.39 -0.02 0.98 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.40 4.84 9.12 -74.06 -0.68 4.16 16 37 H 0.06 1.78 7.39 -2.38 -0.02 1.76 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.42 12.54 7.47 -92.71 -0.69 11.84 16 40 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.20 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -82.29 370.98 -3.01 -85.30 By element: Atomic # 1 Polarization: 49.22 SS G_CDS: -1.66 Total: 47.56 kcal Atomic # 6 Polarization: 29.45 SS G_CDS: 6.06 Total: 35.51 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -8.24 Total: -138.64 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -1.90 Total: -71.37 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.70 Total: -2.98 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -82.29 -3.01 -85.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278172096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.155 kcal (2) G-P(sol) polarization free energy of solvation -82.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds