Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38351 * 119.92231 * 2 1 4 4 C 1.38451 * 120.28230 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.94343 * 180.02562 * 4 3 2 6 6 C 1.38101 * 120.11829 * 359.97438 * 4 3 2 7 7 C 1.39543 * 119.83493 * 0.02719 * 6 4 3 8 8 C 1.47850 * 120.13815 * 179.97438 * 7 6 4 9 9 O 1.21551 * 120.00501 * 211.62295 * 8 7 6 10 10 N 1.34784 * 119.99739 * 31.62237 * 8 7 6 11 11 C 1.46499 * 119.99975 * 5.55605 * 10 8 7 12 12 C 1.46501 * 119.99918 * 185.56324 * 10 8 7 13 13 C 1.52996 * 109.47526 * 89.99662 * 12 10 8 14 14 H 1.08998 * 109.47416 * 305.00150 * 13 12 10 15 15 O 1.42896 * 109.46857 * 64.99894 * 13 12 10 16 16 C 1.53002 * 109.47219 * 185.00090 * 13 12 10 17 17 N 1.46502 * 109.47152 * 180.02562 * 16 13 12 18 18 C 1.46494 * 119.99868 * 89.99735 * 17 16 13 19 19 C 1.36938 * 119.99833 * 269.99953 * 17 16 13 20 20 H 1.07996 * 119.99643 * 142.32553 * 19 17 16 21 21 C 1.38807 * 120.00008 * 322.32426 * 19 17 16 22 22 N 1.31621 * 119.99766 * 156.41927 * 21 19 17 23 23 Si 1.86793 * 120.00116 * 336.41805 * 21 19 17 24 24 H 1.48500 * 109.47337 * 95.35167 * 23 21 19 25 25 H 1.48502 * 109.47298 * 215.34973 * 23 21 19 26 26 H 1.48506 * 109.47462 * 335.34955 * 23 21 19 27 27 C 1.37948 * 119.91694 * 180.27792 * 2 1 3 28 28 H 1.09008 * 109.46972 * 89.99676 * 1 2 3 29 29 H 1.09001 * 109.47624 * 209.99551 * 1 2 3 30 30 H 1.08996 * 109.47421 * 329.99938 * 1 2 3 31 31 H 1.08003 * 119.86163 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.08188 * 180.02562 * 6 4 3 33 33 H 1.08993 * 109.47412 * 268.85007 * 11 10 8 34 34 H 1.08996 * 109.47090 * 28.85395 * 11 10 8 35 35 H 1.09004 * 109.46719 * 148.85023 * 11 10 8 36 36 H 1.09001 * 109.46632 * 329.99592 * 12 10 8 37 37 H 1.09002 * 109.47029 * 210.00026 * 12 10 8 38 38 H 0.96701 * 114.00429 * 60.00663 * 15 13 12 39 39 H 1.08998 * 109.46708 * 299.99851 * 16 13 12 40 40 H 1.09001 * 109.47319 * 59.99813 * 16 13 12 41 41 H 1.09005 * 109.47129 * 86.05866 * 18 17 16 42 42 H 1.08998 * 109.47179 * 206.05693 * 18 17 16 43 43 H 1.09004 * 109.47701 * 326.05549 * 18 17 16 44 44 H 0.97000 * 119.99436 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.06493 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1991 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4386 2.7175 0.0012 6 6 4.2821 0.0176 0.0016 7 6 3.5910 -1.1947 0.0016 8 6 4.3341 -2.4728 0.0021 9 8 3.8650 -3.4489 -0.5498 10 7 5.5319 -2.5556 0.6147 11 6 6.0420 -1.4173 1.3829 12 6 6.3237 -3.7840 0.5121 13 6 7.2411 -3.6989 -0.7093 14 1 6.6450 -3.4907 -1.5977 15 8 8.1929 -2.6505 -0.5179 16 6 7.9762 -5.0288 -0.8885 17 7 8.8552 -4.9471 -2.0578 18 6 10.2368 -4.4849 -1.9046 19 6 8.3852 -5.3029 -3.2938 20 1 8.6893 -4.7463 -4.1678 21 6 7.5179 -6.3790 -3.4232 22 7 6.7139 -6.4548 -4.4625 23 14 7.4919 -7.7193 -2.1224 24 1 6.4152 -7.4348 -1.1400 25 1 7.2378 -9.0318 -2.7690 26 1 8.8019 -7.7569 -1.4240 27 6 2.1950 -1.1956 -0.0058 28 1 -0.3633 0.0001 -1.0278 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6536 2.1324 -0.0004 32 1 5.3620 0.0251 0.0024 33 1 6.6427 -0.7806 0.7335 34 1 5.2052 -0.8436 1.7812 35 1 6.6576 -1.7809 2.2057 36 1 5.6558 -4.6389 0.4061 37 1 6.9269 -3.9036 1.4121 38 1 8.7595 -2.7700 0.2566 39 1 8.5724 -5.2369 -0.0001 40 1 7.2502 -5.8285 -1.0345 41 1 10.8741 -5.3272 -1.6353 42 1 10.5821 -4.0540 -2.8444 43 1 10.2824 -3.7294 -1.1201 44 1 6.1082 -7.2070 -4.5531 45 1 1.6547 -2.1308 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278864945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -27.738605 kcal Electronic energy + Delta-G solvation = -27837.899729 eV Core-core repulsion = 23882.777609 eV Total energy + Delta-G solvation = -3955.122119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63448 -38.93648 -37.51193 -36.73829 -35.53283 -34.63138 -33.15951 -31.53315 -31.30250 -30.11939 -27.67554 -26.84414 -26.37963 -25.65616 -23.53699 -22.09853 -21.76923 -20.84255 -19.53220 -17.34342 -17.10888 -16.85585 -16.25949 -16.00063 -15.61286 -15.56920 -15.18115 -14.83449 -14.44456 -14.30265 -13.83012 -13.62057 -13.58548 -13.45234 -13.09424 -12.95130 -12.73192 -12.66778 -12.45835 -12.43480 -11.93278 -11.86266 -11.64751 -11.56183 -11.36100 -11.28909 -11.21196 -10.82787 -10.59487 -10.42670 -10.17851 -9.94583 -9.69896 -9.57313 -9.15239 -8.95221 -8.55863 -8.37645 -6.72611 -5.95985 -3.35308 0.57364 0.86204 1.80468 2.66194 2.94709 3.32135 3.43286 3.47732 3.52577 4.24585 4.36714 4.55061 4.68072 4.79411 4.85606 4.87822 4.89800 5.02326 5.03760 5.23255 5.29165 5.31314 5.36450 5.40748 5.43879 5.57713 5.63218 5.68181 5.80328 5.87257 5.92274 5.92848 5.96665 6.10230 6.36577 6.38045 6.44657 6.50876 6.73099 6.77928 6.83387 7.33945 8.06491 8.14143 8.17317 8.43414 9.02337 9.74993 10.15945 11.19898 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.003151 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.704360 B = 8884.837567 C = 9787.741780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.039 4.039 5 Cl -0.066 7.066 6 C -0.091 4.091 7 C -0.107 4.107 8 C 0.554 3.446 9 O -0.520 6.520 10 N -0.601 5.601 11 C 0.076 3.924 12 C 0.081 3.919 13 C 0.075 3.925 14 H 0.107 0.893 15 O -0.549 6.549 16 C 0.113 3.887 17 N -0.601 5.601 18 C 0.130 3.870 19 C -0.272 4.272 20 H 0.077 0.923 21 C 0.037 3.963 22 N -0.894 5.894 23 Si 0.873 3.127 24 H -0.284 1.284 25 H -0.299 1.299 26 H -0.270 1.270 27 C -0.061 4.061 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.355 0.645 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.001 0.999 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.263 0.737 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 16.743 16.656 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.112 4.112 4 C -0.066 4.066 5 Cl -0.037 7.037 6 C -0.110 4.110 7 C -0.111 4.111 8 C 0.342 3.658 9 O -0.396 6.396 10 N -0.333 5.333 11 C -0.067 4.067 12 C -0.042 4.042 13 C 0.012 3.988 14 H 0.125 0.875 15 O -0.352 6.352 16 C -0.014 4.014 17 N -0.324 5.324 18 C -0.015 4.015 19 C -0.401 4.401 20 H 0.095 0.905 21 C -0.164 4.164 22 N -0.535 5.535 23 Si 0.703 3.297 24 H -0.212 1.212 25 H -0.227 1.227 26 H -0.195 1.195 27 C -0.080 4.080 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.200 0.800 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.683 16.473 15.697 24.354 hybrid contribution 0.300 -0.874 1.092 1.430 sum -8.383 15.599 16.789 24.402 Atomic orbital electron populations 1.20811 0.89920 1.03243 1.03043 1.19811 0.96729 0.91927 0.99782 1.21092 0.91925 0.98771 0.99379 1.20762 0.92488 0.87226 1.06120 1.98382 1.77201 1.31135 1.96982 1.21710 1.01687 0.89838 0.97739 1.19888 0.94224 0.92844 1.04105 1.18226 0.80883 0.87618 0.79062 1.90859 1.67741 1.37278 1.43752 1.47595 1.18353 1.16011 1.51340 1.22156 0.99702 0.89185 0.95676 1.22445 0.95020 0.87067 0.99662 1.23172 0.88954 0.89936 0.96697 0.87495 1.86651 1.50710 1.47455 1.50384 1.21750 0.94049 0.95215 0.90434 1.43823 1.06700 1.77198 1.04697 1.21061 0.85500 0.95658 0.99274 1.18790 1.26594 1.09796 0.84896 0.90506 1.25470 0.97334 0.97467 0.96130 1.69893 1.21532 1.31018 1.31053 0.86983 0.78050 0.82721 0.81960 1.21180 1.22723 1.19533 1.21246 0.92482 0.98663 0.95648 0.90512 0.90935 0.91153 0.84629 0.83127 0.91426 0.90993 0.91143 0.88859 0.90441 0.79998 0.94102 0.91967 0.98044 0.93874 0.94956 0.92667 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.08 -0.77 5.87 -104.69 -0.61 -1.39 16 3 C -0.09 -0.85 9.47 -39.46 -0.37 -1.22 16 4 C -0.04 -0.41 6.31 -39.55 -0.25 -0.66 16 5 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 6 C -0.09 -1.05 7.41 -39.15 -0.29 -1.34 16 7 C -0.11 -1.42 5.28 -104.97 -0.55 -1.98 16 8 C 0.55 9.08 7.41 -12.32 -0.09 8.99 16 9 O -0.52 -10.78 16.29 5.32 0.09 -10.70 16 10 N -0.60 -8.47 2.84 -182.69 -0.52 -8.99 16 11 C 0.08 0.74 8.43 59.85 0.50 1.25 16 12 C 0.08 1.24 5.15 -4.04 -0.02 1.22 16 13 C 0.07 1.41 3.48 -26.73 -0.09 1.31 16 14 H 0.11 2.56 8.14 -51.93 -0.42 2.13 16 15 O -0.55 -9.03 11.55 -35.23 -0.41 -9.44 16 16 C 0.11 2.39 4.23 -4.04 -0.02 2.37 16 17 N -0.60 -14.62 2.39 -181.12 -0.43 -15.06 16 18 C 0.13 2.66 10.47 59.84 0.63 3.29 16 19 C -0.27 -7.90 9.88 -15.06 -0.15 -8.05 16 20 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 21 C 0.04 1.10 5.28 -17.43 -0.09 1.01 16 22 N -0.89 -28.21 13.97 55.49 0.78 -27.43 16 23 Si 0.87 22.60 25.15 -169.99 -4.27 18.32 16 24 H -0.28 -7.11 6.65 56.52 0.38 -6.74 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 26 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 27 C -0.06 -0.72 9.25 -39.18 -0.36 -1.09 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 32 H 0.15 1.66 5.03 -52.49 -0.26 1.40 16 33 H 0.07 0.67 6.77 -51.93 -0.35 0.32 16 34 H 0.07 0.63 5.88 -51.93 -0.31 0.32 16 35 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 36 H 0.09 1.63 7.35 -51.93 -0.38 1.25 16 37 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 38 H 0.36 4.31 8.80 45.56 0.40 4.72 16 39 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.06 1.48 3.38 -51.93 -0.18 1.31 16 41 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.04 0.89 8.01 -51.93 -0.42 0.48 16 43 H 0.03 0.56 6.82 -51.93 -0.35 0.20 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.14 1.62 7.94 -52.49 -0.42 1.20 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -35.43 378.85 -7.60 -43.02 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.62 Total: 3.35 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.42 Total: 3.34 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.18 Total: -51.48 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.32 Total: -20.14 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.27 Total: 18.32 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.43 -7.60 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278864945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.286 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds