Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38351 * 119.92231 * 2 1 4 4 C 1.38451 * 120.28230 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.94343 * 180.02562 * 4 3 2 6 6 C 1.38101 * 120.11829 * 359.97438 * 4 3 2 7 7 C 1.39543 * 119.83493 * 0.02719 * 6 4 3 8 8 C 1.47850 * 120.13815 * 179.97438 * 7 6 4 9 9 O 1.21551 * 120.00501 * 211.62295 * 8 7 6 10 10 N 1.34784 * 119.99739 * 31.62237 * 8 7 6 11 11 C 1.46499 * 119.99975 * 5.55605 * 10 8 7 12 12 C 1.46501 * 119.99918 * 185.56324 * 10 8 7 13 13 C 1.52996 * 109.47526 * 89.99662 * 12 10 8 14 14 H 1.08998 * 109.47416 * 305.00150 * 13 12 10 15 15 O 1.42896 * 109.46857 * 64.99894 * 13 12 10 16 16 C 1.53002 * 109.47219 * 185.00090 * 13 12 10 17 17 N 1.46502 * 109.47152 * 180.02562 * 16 13 12 18 18 C 1.46494 * 119.99868 * 89.99735 * 17 16 13 19 19 C 1.36938 * 119.99833 * 269.99953 * 17 16 13 20 20 H 1.07996 * 119.99643 * 142.32553 * 19 17 16 21 21 C 1.38807 * 120.00008 * 322.32426 * 19 17 16 22 22 N 1.31621 * 119.99766 * 156.41927 * 21 19 17 23 23 Si 1.86793 * 120.00116 * 336.41805 * 21 19 17 24 24 H 1.48500 * 109.47337 * 95.35167 * 23 21 19 25 25 H 1.48502 * 109.47298 * 215.34973 * 23 21 19 26 26 H 1.48506 * 109.47462 * 335.34955 * 23 21 19 27 27 C 1.37948 * 119.91694 * 180.27792 * 2 1 3 28 28 H 1.09008 * 109.46972 * 89.99676 * 1 2 3 29 29 H 1.09001 * 109.47624 * 209.99551 * 1 2 3 30 30 H 1.08996 * 109.47421 * 329.99938 * 1 2 3 31 31 H 1.08003 * 119.86163 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.08188 * 180.02562 * 6 4 3 33 33 H 1.08993 * 109.47412 * 268.85007 * 11 10 8 34 34 H 1.08996 * 109.47090 * 28.85395 * 11 10 8 35 35 H 1.09004 * 109.46719 * 148.85023 * 11 10 8 36 36 H 1.09001 * 109.46632 * 329.99592 * 12 10 8 37 37 H 1.09002 * 109.47029 * 210.00026 * 12 10 8 38 38 H 0.96701 * 114.00429 * 60.00663 * 15 13 12 39 39 H 1.08998 * 109.46708 * 299.99851 * 16 13 12 40 40 H 1.09001 * 109.47319 * 59.99813 * 16 13 12 41 41 H 1.09005 * 109.47129 * 86.05866 * 18 17 16 42 42 H 1.08998 * 109.47179 * 206.05693 * 18 17 16 43 43 H 1.09004 * 109.47701 * 326.05549 * 18 17 16 44 44 H 0.97000 * 119.99436 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.06493 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1991 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4386 2.7175 0.0012 6 6 4.2821 0.0176 0.0016 7 6 3.5910 -1.1947 0.0016 8 6 4.3341 -2.4728 0.0021 9 8 3.8650 -3.4489 -0.5498 10 7 5.5319 -2.5556 0.6147 11 6 6.0420 -1.4173 1.3829 12 6 6.3237 -3.7840 0.5121 13 6 7.2411 -3.6989 -0.7093 14 1 6.6450 -3.4907 -1.5977 15 8 8.1929 -2.6505 -0.5179 16 6 7.9762 -5.0288 -0.8885 17 7 8.8552 -4.9471 -2.0578 18 6 10.2368 -4.4849 -1.9046 19 6 8.3852 -5.3029 -3.2938 20 1 8.6893 -4.7463 -4.1678 21 6 7.5179 -6.3790 -3.4232 22 7 6.7139 -6.4548 -4.4625 23 14 7.4919 -7.7193 -2.1224 24 1 6.4152 -7.4348 -1.1400 25 1 7.2378 -9.0318 -2.7690 26 1 8.8019 -7.7569 -1.4240 27 6 2.1950 -1.1956 -0.0058 28 1 -0.3633 0.0001 -1.0278 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6536 2.1324 -0.0004 32 1 5.3620 0.0251 0.0024 33 1 6.6427 -0.7806 0.7335 34 1 5.2052 -0.8436 1.7812 35 1 6.6576 -1.7809 2.2057 36 1 5.6558 -4.6389 0.4061 37 1 6.9269 -3.9036 1.4121 38 1 8.7595 -2.7700 0.2566 39 1 8.5724 -5.2369 -0.0001 40 1 7.2502 -5.8285 -1.0345 41 1 10.8741 -5.3272 -1.6353 42 1 10.5821 -4.0540 -2.8444 43 1 10.2824 -3.7294 -1.1201 44 1 6.1082 -7.2070 -4.5531 45 1 1.6547 -2.1308 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278864945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -53.319486 kcal Electronic energy + Delta-G solvation = -27839.008999 eV Core-core repulsion = 23882.777609 eV Total energy + Delta-G solvation = -3956.231389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69750 -39.97232 -38.98626 -37.53226 -37.00258 -36.14321 -33.99743 -33.70937 -32.23962 -31.42147 -28.67545 -28.01053 -27.64066 -27.30662 -24.71559 -23.24949 -22.89959 -22.64648 -20.64467 -19.04849 -18.30239 -17.87318 -17.58193 -17.33172 -17.09972 -16.78778 -16.46105 -16.06719 -15.75036 -15.47542 -15.23279 -14.93660 -14.78650 -14.59332 -14.46198 -14.29011 -13.87728 -13.77969 -13.55899 -13.37785 -13.20575 -13.14789 -12.72346 -12.68220 -12.65214 -12.47830 -12.40417 -12.22217 -12.10571 -12.01821 -11.96048 -11.62537 -11.38895 -11.07368 -10.65321 -10.03186 -9.76813 -9.67423 -8.69642 -8.25073 -5.60903 -0.32786 0.03386 1.00048 1.26126 1.35668 1.48280 1.57116 1.86416 2.38333 2.49758 2.95993 3.28742 3.40567 3.58684 3.61898 3.90660 3.93953 4.02195 4.04976 4.12071 4.21893 4.23208 4.34163 4.40848 4.54720 4.61955 4.68056 4.71978 4.74290 4.81262 4.84274 4.87514 4.97871 5.06116 5.09309 5.14519 5.15434 5.22149 5.35129 5.43173 5.61636 5.89556 6.11726 6.21758 6.93661 6.97970 7.02566 7.61218 8.01302 8.95380 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.003151 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.704360 B = 8884.837567 C = 9787.741780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.084 4.084 4 C -0.043 4.043 5 Cl -0.056 7.056 6 C -0.092 4.092 7 C -0.127 4.127 8 C 0.544 3.456 9 O -0.582 6.582 10 N -0.597 5.597 11 C 0.071 3.929 12 C 0.088 3.912 13 C 0.097 3.903 14 H 0.041 0.959 15 O -0.552 6.552 16 C 0.106 3.894 17 N -0.616 5.616 18 C 0.129 3.871 19 C -0.266 4.266 20 H 0.031 0.969 21 C -0.024 4.024 22 N -0.949 5.949 23 Si 0.946 3.054 24 H -0.274 1.274 25 H -0.306 1.306 26 H -0.249 1.249 27 C -0.076 4.076 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.382 0.618 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.016 0.984 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.262 0.738 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 18.599 20.495 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.102 4.102 4 C -0.069 4.069 5 Cl -0.027 7.027 6 C -0.111 4.111 7 C -0.131 4.131 8 C 0.334 3.666 9 O -0.463 6.463 10 N -0.327 5.327 11 C -0.070 4.070 12 C -0.036 4.036 13 C 0.034 3.966 14 H 0.059 0.941 15 O -0.358 6.358 16 C -0.020 4.020 17 N -0.340 5.340 18 C -0.015 4.015 19 C -0.396 4.396 20 H 0.048 0.952 21 C -0.221 4.221 22 N -0.593 5.593 23 Si 0.774 3.226 24 H -0.201 1.201 25 H -0.234 1.234 26 H -0.172 1.172 27 C -0.095 4.095 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.969 18.385 19.617 28.042 hybrid contribution 0.152 -1.230 -0.121 1.245 sum -7.817 17.155 19.497 27.121 Atomic orbital electron populations 1.20900 0.87678 1.04628 1.03762 1.20102 0.98253 0.91014 0.98270 1.21448 0.91578 0.99739 0.97440 1.20850 0.93090 0.87169 1.05832 1.98387 1.77144 1.30237 1.96919 1.21673 1.01824 0.89654 0.97966 1.19725 0.94715 0.91999 1.06642 1.18847 0.81573 0.88034 0.78178 1.90813 1.69438 1.39523 1.46499 1.47700 1.17476 1.16800 1.50719 1.22427 1.00587 0.87965 0.96051 1.22300 0.94433 0.86883 0.99980 1.22509 0.89177 0.89040 0.95893 0.94099 1.86609 1.50833 1.46193 1.52188 1.21897 0.93878 0.95464 0.90743 1.43968 1.08816 1.77460 1.03786 1.21180 0.83367 0.96987 0.99964 1.18662 1.25900 1.09013 0.86034 0.95162 1.26169 0.97162 0.99877 0.98866 1.70044 1.23194 1.31882 1.34161 0.85805 0.79140 0.78477 0.79188 1.20150 1.23446 1.17248 1.21344 0.92184 0.99501 0.96455 0.89990 0.90588 0.88807 0.81753 0.82887 0.91252 0.89864 0.87846 0.91622 0.85174 0.76976 0.89212 0.94818 0.96607 0.95358 0.91079 0.92918 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.53 16 2 C -0.08 -1.32 5.87 -19.91 -0.12 -1.44 16 3 C -0.08 -1.32 9.47 22.35 0.21 -1.11 16 4 C -0.04 -0.80 6.31 22.29 0.14 -0.66 16 5 Cl -0.06 -0.94 28.95 -2.72 -0.08 -1.02 16 6 C -0.09 -2.05 7.41 22.55 0.17 -1.89 16 7 C -0.13 -3.46 5.28 -20.09 -0.11 -3.56 16 8 C 0.54 18.59 7.41 86.79 0.64 19.23 16 9 O -0.58 -26.02 16.29 -3.88 -0.06 -26.09 16 10 N -0.60 -16.40 2.84 -850.19 -2.41 -18.81 16 11 C 0.07 1.20 8.43 127.77 1.08 2.27 16 12 C 0.09 2.56 5.15 86.38 0.44 3.00 16 13 C 0.10 3.58 3.48 30.59 0.11 3.69 16 14 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 15 O -0.55 -16.69 11.55 -148.98 -1.72 -18.42 16 16 C 0.11 4.32 4.23 86.38 0.37 4.69 16 17 N -0.62 -29.63 2.39 -726.94 -1.74 -31.37 16 18 C 0.13 4.98 10.47 127.77 1.34 6.32 16 19 C -0.27 -16.04 9.88 84.03 0.83 -15.21 16 20 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 21 C -0.02 -1.50 5.28 84.86 0.45 -1.05 16 22 N -0.95 -63.22 13.97 21.65 0.30 -62.92 16 23 Si 0.95 47.88 25.15 68.60 1.72 49.60 16 24 H -0.27 -13.33 6.65 99.48 0.66 -12.67 16 25 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 26 H -0.25 -11.59 7.11 99.48 0.71 -10.88 16 27 C -0.08 -1.82 9.25 22.53 0.21 -1.61 16 28 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.15 3.22 5.03 -2.91 -0.01 3.21 16 33 H 0.07 1.19 6.77 -2.39 -0.02 1.17 16 34 H 0.08 1.26 5.88 -2.39 -0.01 1.25 16 35 H 0.10 1.10 7.91 -2.38 -0.02 1.08 16 36 H 0.07 2.32 7.35 -2.39 -0.02 2.31 16 37 H 0.13 2.41 7.90 -2.39 -0.02 2.39 16 38 H 0.38 7.26 8.80 -74.06 -0.65 6.61 16 39 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 40 H 0.03 1.58 3.38 -2.39 -0.01 1.57 16 41 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.03 1.15 8.01 -2.39 -0.02 1.13 16 43 H 0.07 2.17 6.82 -2.38 -0.02 2.15 16 44 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 45 H 0.13 3.26 7.94 -2.91 -0.02 3.23 16 Total: -1.00 -85.07 378.85 2.81 -82.26 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.32 Total: 14.62 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.47 Total: 12.14 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -3.85 Total: -113.10 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.78 Total: -44.50 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.72 Total: 49.60 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -85.07 2.81 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278864945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.943 kcal (2) G-P(sol) polarization free energy of solvation -85.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds