Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38362 * 119.92213 * 2 1 4 4 C 1.38450 * 120.27949 * 179.97438 * 3 2 1 5 5 Cl 1.73607 * 119.93731 * 180.02562 * 4 3 2 6 6 C 1.38092 * 120.12053 * 359.97438 * 4 3 2 7 7 C 1.39548 * 119.83756 * 0.02562 * 6 4 3 8 8 C 1.47846 * 120.13668 * 179.97438 * 7 6 4 9 9 O 1.21561 * 120.00020 * 222.12580 * 8 7 6 10 10 N 1.34775 * 120.00289 * 42.12172 * 8 7 6 11 11 C 1.46494 * 120.00256 * 355.32167 * 10 8 7 12 12 C 1.46501 * 119.99982 * 175.31959 * 10 8 7 13 13 C 1.53009 * 109.47068 * 90.00176 * 12 10 8 14 14 H 1.08999 * 109.46849 * 59.99912 * 13 12 10 15 15 O 1.42901 * 109.46919 * 300.00098 * 13 12 10 16 16 C 1.53002 * 109.47014 * 179.97438 * 13 12 10 17 17 N 1.46502 * 109.46901 * 184.99883 * 16 13 12 18 18 C 1.46497 * 120.00038 * 269.99991 * 17 16 13 19 19 C 1.36932 * 119.99681 * 89.99886 * 17 16 13 20 20 H 1.08004 * 120.00716 * 331.60388 * 19 17 16 21 21 C 1.38815 * 119.99956 * 151.32834 * 19 17 16 22 22 N 1.31618 * 119.99816 * 359.11196 * 21 19 17 23 23 Si 1.86797 * 120.00503 * 179.11757 * 21 19 17 24 24 H 1.48497 * 109.47343 * 89.99358 * 23 21 19 25 25 H 1.48497 * 109.47172 * 209.99968 * 23 21 19 26 26 H 1.48504 * 109.46667 * 329.99589 * 23 21 19 27 27 C 1.37951 * 119.92065 * 180.23139 * 2 1 3 28 28 H 1.09005 * 109.46990 * 90.00135 * 1 2 3 29 29 H 1.08998 * 109.46879 * 210.00155 * 1 2 3 30 30 H 1.08999 * 109.47033 * 330.00555 * 1 2 3 31 31 H 1.07997 * 119.85795 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.07985 * 180.02562 * 6 4 3 33 33 H 1.09004 * 109.47099 * 275.78545 * 11 10 8 34 34 H 1.09004 * 109.47046 * 35.78335 * 11 10 8 35 35 H 1.08996 * 109.47802 * 155.78336 * 11 10 8 36 36 H 1.08999 * 109.47357 * 330.00399 * 12 10 8 37 37 H 1.09002 * 109.47450 * 210.00235 * 12 10 8 38 38 H 0.96701 * 113.99523 * 299.99853 * 15 13 12 39 39 H 1.08998 * 109.46875 * 65.00433 * 16 13 12 40 40 H 1.08997 * 109.46994 * 304.99985 * 16 13 12 41 41 H 1.08997 * 109.47067 * 272.10511 * 18 17 16 42 42 H 1.09005 * 109.47055 * 32.10920 * 18 17 16 43 43 H 1.09003 * 109.46673 * 152.10334 * 18 17 16 44 44 H 0.97000 * 120.00379 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.06092 * 0.04197 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4386 2.7176 0.0012 6 6 4.2821 0.0177 0.0016 7 6 3.5910 -1.1946 0.0016 8 6 4.3342 -2.4727 0.0022 9 8 3.9650 -3.3908 -0.7039 10 7 5.4210 -2.6199 0.7855 11 6 5.9266 -1.4827 1.5582 12 6 6.0969 -3.9173 0.8642 13 6 7.1798 -3.9945 -0.2141 14 1 7.9057 -3.1966 -0.0577 15 8 6.5801 -3.8472 -1.5028 16 6 7.8861 -5.3493 -0.1315 17 7 8.9998 -5.3781 -1.0828 18 6 8.7815 -5.8511 -2.4520 19 6 10.2448 -4.9629 -0.6921 20 1 10.3473 -4.2218 0.0868 21 6 11.3755 -5.4987 -1.2933 22 7 11.2514 -6.4185 -2.2264 23 14 13.0732 -4.9145 -0.7777 24 1 13.5698 -5.7593 0.3380 25 1 14.0039 -5.0192 -1.9302 26 1 12.9955 -3.5003 -0.3312 27 6 2.1951 -1.1956 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6536 2.1324 0.0004 32 1 5.3620 0.0252 0.0024 33 1 6.5769 -0.8757 0.9282 34 1 5.0887 -0.8777 1.9048 35 1 6.4903 -1.8482 2.4164 36 1 5.3710 -4.7153 0.7078 37 1 6.5543 -4.0298 1.8472 38 1 5.9221 -4.5248 -1.7101 39 1 7.1796 -6.1427 -0.3750 40 1 8.2671 -5.4993 0.8787 41 1 8.9178 -6.9319 -2.4891 42 1 7.7677 -5.6018 -2.7653 43 1 9.4967 -5.3715 -3.1204 44 1 12.0414 -6.7928 -2.6468 45 1 1.6548 -2.1307 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278864946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -36.753205 kcal Electronic energy + Delta-G solvation = -27406.648868 eV Core-core repulsion = 23451.135846 eV Total energy + Delta-G solvation = -3955.513022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66403 -38.99633 -37.20956 -36.77932 -35.47570 -34.53666 -33.20790 -31.43274 -31.21870 -29.62898 -27.61644 -26.90502 -26.02560 -25.60081 -23.62355 -22.19734 -21.76948 -20.52476 -19.55853 -17.36695 -17.00935 -16.83730 -16.35878 -16.08100 -15.69689 -15.29678 -14.89595 -14.65664 -14.48352 -14.34761 -13.85172 -13.66936 -13.54800 -13.24509 -13.09635 -13.02808 -12.81051 -12.76718 -12.43281 -12.02057 -11.80970 -11.73584 -11.63040 -11.38332 -11.30007 -11.08678 -10.86117 -10.67286 -10.49227 -10.21889 -10.04617 -9.91723 -9.89248 -9.58509 -9.21761 -9.03634 -8.59454 -8.38034 -6.54909 -5.69130 -3.18963 0.53608 0.78046 1.74147 2.60097 2.90194 3.30798 3.38979 3.44681 3.46396 4.17773 4.29330 4.51023 4.60983 4.77261 4.80052 4.84041 4.94722 5.06755 5.15221 5.19266 5.20589 5.33625 5.37990 5.46024 5.49004 5.55428 5.60412 5.72941 5.74428 5.86936 5.90536 6.01069 6.03080 6.12107 6.30493 6.48851 6.63363 6.78996 7.04348 7.30099 7.56772 7.78983 7.89722 8.10852 8.40561 8.49792 9.30706 9.91877 10.44386 11.36023 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.002551 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.282279 B =10971.859612 C =12003.828777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.037 4.037 5 Cl -0.065 7.065 6 C -0.089 4.089 7 C -0.103 4.103 8 C 0.564 3.436 9 O -0.524 6.524 10 N -0.600 5.600 11 C 0.072 3.928 12 C 0.082 3.918 13 C 0.070 3.930 14 H 0.092 0.908 15 O -0.547 6.547 16 C 0.126 3.874 17 N -0.594 5.594 18 C 0.168 3.832 19 C -0.256 4.256 20 H 0.063 0.937 21 C 0.005 3.995 22 N -0.907 5.907 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.066 4.066 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.366 0.634 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.013 0.987 42 H -0.001 1.001 43 H 0.053 0.947 44 H 0.252 0.748 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.357 15.237 9.121 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.114 4.114 4 C -0.064 4.064 5 Cl -0.036 7.036 6 C -0.108 4.108 7 C -0.107 4.107 8 C 0.352 3.648 9 O -0.400 6.400 10 N -0.332 5.332 11 C -0.071 4.071 12 C -0.041 4.041 13 C 0.006 3.994 14 H 0.110 0.890 15 O -0.351 6.351 16 C -0.003 4.003 17 N -0.315 5.315 18 C 0.024 3.976 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.552 5.552 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.085 4.085 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.213 0.787 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.900 15.278 8.605 27.281 hybrid contribution 0.964 0.093 0.339 1.026 sum -19.936 15.371 8.944 26.715 Atomic orbital electron populations 1.20812 0.89933 1.03291 1.02995 1.19809 0.96697 0.91948 0.99605 1.21084 0.91897 0.98800 0.99634 1.20774 0.92523 0.87271 1.05810 1.98389 1.77180 1.31073 1.96947 1.21500 1.01299 0.89858 0.98180 1.19893 0.94211 0.93032 1.03529 1.18054 0.80060 0.86892 0.79839 1.90757 1.68008 1.41593 1.39685 1.47624 1.28232 1.12122 1.45212 1.22108 0.99737 0.89240 0.96064 1.22480 0.96380 0.84212 1.01002 1.23244 0.92265 1.01753 0.82096 0.89010 1.86558 1.59092 1.55294 1.34156 1.21307 0.91107 0.93127 0.94769 1.43676 1.04811 1.75761 1.07296 1.20768 0.94778 0.96922 0.85147 1.19124 0.82763 1.17058 1.19597 0.91913 1.25198 0.98151 0.96968 0.99038 1.70056 1.27934 1.29579 1.27590 0.86260 0.84378 0.78194 0.77711 1.21399 1.21652 1.20559 1.21172 0.92344 0.98540 0.96457 0.90551 0.90946 0.91116 0.84630 0.83670 0.92089 0.91020 0.90468 0.89847 0.89728 0.78713 0.94273 0.92888 0.96840 0.98280 0.92837 0.93740 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.08 -0.65 5.87 -104.68 -0.61 -1.26 16 3 C -0.10 -0.77 9.47 -39.46 -0.37 -1.15 16 4 C -0.04 -0.35 6.31 -39.56 -0.25 -0.60 16 5 Cl -0.06 -0.59 28.95 -51.86 -1.50 -2.09 16 6 C -0.09 -0.94 7.42 -39.15 -0.29 -1.23 16 7 C -0.10 -1.20 5.14 -104.97 -0.54 -1.74 16 8 C 0.56 8.00 6.90 -12.33 -0.09 7.91 16 9 O -0.52 -8.98 15.06 -8.16 -0.12 -9.10 16 10 N -0.60 -7.67 2.83 -182.69 -0.52 -8.19 16 11 C 0.07 0.69 8.98 59.84 0.54 1.22 16 12 C 0.08 1.12 5.18 -4.04 -0.02 1.10 16 13 C 0.07 1.24 3.48 -26.73 -0.09 1.14 16 14 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 15 O -0.55 -10.79 10.84 -48.70 -0.53 -11.32 16 16 C 0.13 2.55 5.34 -4.04 -0.02 2.53 16 17 N -0.59 -15.31 2.88 -181.12 -0.52 -15.83 16 18 C 0.17 4.40 8.80 59.85 0.53 4.93 16 19 C -0.26 -7.12 9.62 -15.06 -0.14 -7.27 16 20 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 21 C 0.00 0.14 5.27 -17.43 -0.09 0.04 16 22 N -0.91 -27.08 10.51 55.49 0.58 -26.49 16 23 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.07 -0.66 9.31 -39.18 -0.36 -1.03 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.15 1.51 5.57 -52.49 -0.29 1.21 16 33 H 0.06 0.59 6.83 -51.93 -0.35 0.24 16 34 H 0.07 0.59 6.06 -51.93 -0.31 0.27 16 35 H 0.08 0.62 7.83 -51.93 -0.41 0.22 16 36 H 0.08 1.16 7.49 -51.93 -0.39 0.77 16 37 H 0.08 0.96 7.86 -51.93 -0.41 0.56 16 38 H 0.37 6.74 8.31 45.56 0.38 7.12 16 39 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 41 H 0.01 0.37 7.71 -51.93 -0.40 -0.03 16 42 H 0.00 -0.03 7.08 -51.93 -0.37 -0.40 16 43 H 0.05 1.53 6.90 -51.93 -0.36 1.17 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.57 381.48 -9.17 -42.74 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.83 Total: 3.13 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.47 Total: 4.36 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.46 Total: -50.51 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.65 Total: -20.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.57 -9.17 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278864946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.988 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds