Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38362 * 119.92213 * 2 1 4 4 C 1.38450 * 120.27949 * 179.97438 * 3 2 1 5 5 Cl 1.73607 * 119.93731 * 180.02562 * 4 3 2 6 6 C 1.38092 * 120.12053 * 359.97438 * 4 3 2 7 7 C 1.39548 * 119.83756 * 0.02562 * 6 4 3 8 8 C 1.47846 * 120.13668 * 179.97438 * 7 6 4 9 9 O 1.21561 * 120.00020 * 222.12580 * 8 7 6 10 10 N 1.34775 * 120.00289 * 42.12172 * 8 7 6 11 11 C 1.46494 * 120.00256 * 355.32167 * 10 8 7 12 12 C 1.46501 * 119.99982 * 175.31959 * 10 8 7 13 13 C 1.53009 * 109.47068 * 90.00176 * 12 10 8 14 14 H 1.08999 * 109.46849 * 59.99912 * 13 12 10 15 15 O 1.42901 * 109.46919 * 300.00098 * 13 12 10 16 16 C 1.53002 * 109.47014 * 179.97438 * 13 12 10 17 17 N 1.46502 * 109.46901 * 184.99883 * 16 13 12 18 18 C 1.46497 * 120.00038 * 269.99991 * 17 16 13 19 19 C 1.36932 * 119.99681 * 89.99886 * 17 16 13 20 20 H 1.08004 * 120.00716 * 331.60388 * 19 17 16 21 21 C 1.38815 * 119.99956 * 151.32834 * 19 17 16 22 22 N 1.31618 * 119.99816 * 359.11196 * 21 19 17 23 23 Si 1.86797 * 120.00503 * 179.11757 * 21 19 17 24 24 H 1.48497 * 109.47343 * 89.99358 * 23 21 19 25 25 H 1.48497 * 109.47172 * 209.99968 * 23 21 19 26 26 H 1.48504 * 109.46667 * 329.99589 * 23 21 19 27 27 C 1.37951 * 119.92065 * 180.23139 * 2 1 3 28 28 H 1.09005 * 109.46990 * 90.00135 * 1 2 3 29 29 H 1.08998 * 109.46879 * 210.00155 * 1 2 3 30 30 H 1.08999 * 109.47033 * 330.00555 * 1 2 3 31 31 H 1.07997 * 119.85795 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.07985 * 180.02562 * 6 4 3 33 33 H 1.09004 * 109.47099 * 275.78545 * 11 10 8 34 34 H 1.09004 * 109.47046 * 35.78335 * 11 10 8 35 35 H 1.08996 * 109.47802 * 155.78336 * 11 10 8 36 36 H 1.08999 * 109.47357 * 330.00399 * 12 10 8 37 37 H 1.09002 * 109.47450 * 210.00235 * 12 10 8 38 38 H 0.96701 * 113.99523 * 299.99853 * 15 13 12 39 39 H 1.08998 * 109.46875 * 65.00433 * 16 13 12 40 40 H 1.08997 * 109.46994 * 304.99985 * 16 13 12 41 41 H 1.08997 * 109.47067 * 272.10511 * 18 17 16 42 42 H 1.09005 * 109.47055 * 32.10920 * 18 17 16 43 43 H 1.09003 * 109.46673 * 152.10334 * 18 17 16 44 44 H 0.97000 * 120.00379 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.06092 * 0.04197 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4386 2.7176 0.0012 6 6 4.2821 0.0177 0.0016 7 6 3.5910 -1.1946 0.0016 8 6 4.3342 -2.4727 0.0022 9 8 3.9650 -3.3908 -0.7039 10 7 5.4210 -2.6199 0.7855 11 6 5.9266 -1.4827 1.5582 12 6 6.0969 -3.9173 0.8642 13 6 7.1798 -3.9945 -0.2141 14 1 7.9057 -3.1966 -0.0577 15 8 6.5801 -3.8472 -1.5028 16 6 7.8861 -5.3493 -0.1315 17 7 8.9998 -5.3781 -1.0828 18 6 8.7815 -5.8511 -2.4520 19 6 10.2448 -4.9629 -0.6921 20 1 10.3473 -4.2218 0.0868 21 6 11.3755 -5.4987 -1.2933 22 7 11.2514 -6.4185 -2.2264 23 14 13.0732 -4.9145 -0.7777 24 1 13.5698 -5.7593 0.3380 25 1 14.0039 -5.0192 -1.9302 26 1 12.9955 -3.5003 -0.3312 27 6 2.1951 -1.1956 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6536 2.1324 0.0004 32 1 5.3620 0.0252 0.0024 33 1 6.5769 -0.8757 0.9282 34 1 5.0887 -0.8777 1.9048 35 1 6.4903 -1.8482 2.4164 36 1 5.3710 -4.7153 0.7078 37 1 6.5543 -4.0298 1.8472 38 1 5.9221 -4.5248 -1.7101 39 1 7.1796 -6.1427 -0.3750 40 1 8.2671 -5.4993 0.8787 41 1 8.9178 -6.9319 -2.4891 42 1 7.7677 -5.6018 -2.7653 43 1 9.4967 -5.3715 -3.1204 44 1 12.0414 -6.7928 -2.6468 45 1 1.6548 -2.1307 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278864946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -57.300524 kcal Electronic energy + Delta-G solvation = -27407.539867 eV Core-core repulsion = 23451.135846 eV Total energy + Delta-G solvation = -3956.404020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58902 -39.91645 -38.67263 -37.51590 -36.82011 -36.18634 -33.93900 -33.27575 -32.13888 -31.04127 -28.50301 -27.88416 -27.65680 -27.18747 -24.78170 -23.28495 -22.85869 -22.24250 -20.53502 -18.80574 -18.27778 -17.89454 -17.48009 -17.10017 -16.87019 -16.69689 -16.33489 -15.98803 -15.75296 -15.31627 -15.08201 -14.81963 -14.73315 -14.46941 -14.40109 -13.86881 -13.78296 -13.68726 -13.34289 -13.17076 -13.06604 -12.79783 -12.71340 -12.66083 -12.56697 -12.48779 -12.20067 -12.18417 -12.07621 -12.01661 -11.92952 -11.82067 -11.23521 -10.97500 -10.59194 -9.97050 -9.74720 -9.63996 -8.59862 -7.83113 -5.35818 -0.23200 0.06398 1.02239 1.45628 1.47218 1.56050 1.64701 1.93232 2.49598 2.51917 3.31409 3.33318 3.58303 3.65537 3.74326 3.94040 4.04079 4.11353 4.15508 4.21763 4.22189 4.28527 4.45606 4.54880 4.57146 4.63779 4.71868 4.78065 4.83571 4.84848 4.95797 4.99427 5.02233 5.11953 5.18672 5.25547 5.37053 5.39741 5.47490 5.60997 5.65369 5.70393 6.29448 6.36477 6.92369 7.07377 7.16738 7.87031 8.35220 9.21011 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.002551 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.282279 B =10971.859612 C =12003.828777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.042 4.042 5 Cl -0.062 7.062 6 C -0.095 4.095 7 C -0.121 4.121 8 C 0.558 3.442 9 O -0.563 6.563 10 N -0.600 5.600 11 C 0.067 3.933 12 C 0.093 3.907 13 C 0.083 3.917 14 H 0.074 0.926 15 O -0.565 6.565 16 C 0.124 3.876 17 N -0.613 5.613 18 C 0.187 3.813 19 C -0.262 4.262 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.973 3.027 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.268 1.268 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.371 0.629 39 H 0.049 0.951 40 H 0.065 0.935 41 H -0.009 1.009 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.247 0.753 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.702 17.238 11.024 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.108 4.108 4 C -0.069 4.069 5 Cl -0.033 7.033 6 C -0.114 4.114 7 C -0.124 4.124 8 C 0.347 3.653 9 O -0.443 6.443 10 N -0.331 5.331 11 C -0.075 4.075 12 C -0.031 4.031 13 C 0.020 3.980 14 H 0.092 0.908 15 O -0.371 6.371 16 C -0.004 4.004 17 N -0.336 5.336 18 C 0.041 3.959 19 C -0.393 4.393 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.589 5.589 23 Si 0.801 3.199 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.193 1.193 27 C -0.094 4.094 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.218 0.782 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.010 0.990 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.268 17.319 10.563 30.123 hybrid contribution 1.279 -0.463 -0.245 1.382 sum -20.990 16.856 10.318 28.830 Atomic orbital electron populations 1.20898 0.87695 1.04581 1.03800 1.20107 0.98200 0.91083 0.98033 1.21410 0.91436 0.99868 0.98037 1.20861 0.93148 0.87001 1.05896 1.98391 1.77289 1.30685 1.96940 1.21443 1.01211 0.89983 0.98787 1.19757 0.94785 0.92157 1.05693 1.18522 0.80251 0.87354 0.79188 1.90723 1.69154 1.43082 1.41321 1.47699 1.27733 1.12560 1.45073 1.22306 1.00470 0.88448 0.96236 1.22268 0.95138 0.84993 1.00688 1.22960 0.93025 0.99192 0.82796 0.90781 1.86528 1.59357 1.55692 1.35519 1.21515 0.89860 0.94897 0.94082 1.43921 1.05840 1.75952 1.07897 1.20438 0.94804 0.95136 0.85478 1.19511 0.83778 1.16849 1.19130 0.91091 1.26028 1.02047 0.97561 0.99387 1.70239 1.28482 1.31171 1.28960 0.85187 0.79484 0.78260 0.77005 1.20705 1.22336 1.19275 1.21310 0.91856 0.99502 0.96687 0.89845 0.90332 0.89243 0.82160 0.84004 0.92374 0.89562 0.88478 0.90018 0.86738 0.78193 0.93273 0.91692 0.99032 0.96137 0.96139 0.94330 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 2 C -0.07 -1.03 5.87 -19.90 -0.12 -1.15 16 3 C -0.09 -1.22 9.47 22.35 0.21 -1.00 16 4 C -0.04 -0.73 6.31 22.29 0.14 -0.59 16 5 Cl -0.06 -1.02 28.95 -2.72 -0.08 -1.10 16 6 C -0.10 -1.92 7.42 22.55 0.17 -1.75 16 7 C -0.12 -2.74 5.14 -20.09 -0.10 -2.84 16 8 C 0.56 15.67 6.90 86.79 0.60 16.27 16 9 O -0.56 -19.53 15.06 8.97 0.14 -19.40 16 10 N -0.60 -14.68 2.83 -850.17 -2.40 -17.09 16 11 C 0.07 1.17 8.98 127.77 1.15 2.32 16 12 C 0.09 2.39 5.18 86.38 0.45 2.83 16 13 C 0.08 2.88 3.48 30.60 0.11 2.99 16 14 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 15 O -0.57 -22.41 10.84 -136.10 -1.48 -23.88 16 16 C 0.12 4.91 5.34 86.38 0.46 5.37 16 17 N -0.61 -31.82 2.88 -726.93 -2.10 -33.92 16 18 C 0.19 10.01 8.80 127.77 1.12 11.13 16 19 C -0.26 -14.63 9.62 84.04 0.81 -13.82 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.06 -3.19 5.27 84.86 0.45 -2.74 16 22 N -0.94 -57.62 10.51 21.65 0.23 -57.40 16 23 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C -0.07 -1.42 9.31 22.53 0.21 -1.21 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 30 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16 31 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.14 2.86 5.57 -2.91 -0.02 2.85 16 33 H 0.06 1.06 6.83 -2.39 -0.02 1.05 16 34 H 0.09 1.27 6.06 -2.39 -0.01 1.25 16 35 H 0.10 1.30 7.83 -2.39 -0.02 1.28 16 36 H 0.08 2.18 7.49 -2.39 -0.02 2.16 16 37 H 0.11 2.28 7.86 -2.39 -0.02 2.26 16 38 H 0.37 13.78 8.31 -74.06 -0.62 13.16 16 39 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 40 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 41 H -0.01 -0.49 7.71 -2.39 -0.02 -0.51 16 42 H 0.02 0.98 7.08 -2.38 -0.02 0.96 16 43 H 0.02 1.19 6.90 -2.39 -0.02 1.17 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -73.57 381.48 3.09 -70.48 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.40 Total: 18.99 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.36 Total: 15.66 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.27 Total: -108.40 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.34 Total: -43.28 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -73.57 3.09 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278864946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.175 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds