Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37911 * 120.07093 * 2 1 4 4 C 1.38487 * 120.13443 * 180.30020 * 3 2 1 5 5 Cl 1.73606 * 119.87093 * 179.70098 * 4 3 2 6 6 C 1.38529 * 120.26478 * 359.67362 * 4 3 2 7 7 C 1.37878 * 120.13211 * 0.04959 * 6 4 3 8 8 C 1.39597 * 120.06543 * 179.72453 * 2 1 3 9 9 C 1.47787 * 120.13051 * 359.97438 * 8 2 1 10 10 O 1.21567 * 119.99895 * 49.37734 * 9 8 2 11 11 N 1.34769 * 120.00128 * 229.37385 * 9 8 2 12 12 C 1.46499 * 119.99998 * 355.28589 * 11 9 8 13 13 C 1.46507 * 120.00180 * 175.28201 * 11 9 8 14 14 C 1.52996 * 109.46796 * 90.00003 * 13 11 9 15 15 H 1.09002 * 109.47041 * 60.00605 * 14 13 11 16 16 O 1.42897 * 109.47580 * 300.00179 * 14 13 11 17 17 C 1.53003 * 109.46939 * 180.02562 * 14 13 11 18 18 N 1.46502 * 109.47132 * 185.00357 * 17 14 13 19 19 C 1.46503 * 119.99810 * 269.99578 * 18 17 14 20 20 C 1.36929 * 120.00281 * 89.99825 * 18 17 14 21 21 H 1.08009 * 120.00206 * 26.83660 * 20 18 17 22 22 C 1.38809 * 120.00197 * 206.83718 * 20 18 17 23 23 N 1.31618 * 119.99942 * 8.31544 * 22 20 18 24 24 Si 1.86801 * 119.99992 * 188.32057 * 22 20 18 25 25 H 1.48502 * 109.47429 * 90.00035 * 24 22 20 26 26 H 1.48499 * 109.46953 * 209.99633 * 24 22 20 27 27 H 1.48497 * 109.47079 * 329.99483 * 24 22 20 28 28 H 1.08997 * 109.47148 * 264.48094 * 1 2 3 29 29 H 1.09007 * 109.46956 * 24.47696 * 1 2 3 30 30 H 1.08997 * 109.47397 * 144.47321 * 1 2 3 31 31 H 1.08005 * 119.93355 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.94077 * 180.02562 * 6 4 3 33 33 H 1.07999 * 120.07179 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46861 * 275.34404 * 12 11 9 35 35 H 1.08991 * 109.47517 * 35.34724 * 12 11 9 36 36 H 1.09002 * 109.47120 * 155.34762 * 12 11 9 37 37 H 1.09002 * 109.46832 * 330.00480 * 13 11 9 38 38 H 1.09000 * 109.47133 * 210.00511 * 13 11 9 39 39 H 0.96709 * 114.00074 * 300.00282 * 16 14 13 40 40 H 1.09004 * 109.47077 * 305.00236 * 17 14 13 41 41 H 1.08994 * 109.47438 * 64.99845 * 17 14 13 42 42 H 1.08997 * 109.47141 * 94.12884 * 19 18 17 43 43 H 1.08995 * 109.47159 * 214.13317 * 19 18 17 44 44 H 1.09006 * 109.47128 * 334.13479 * 19 18 17 45 45 H 0.97007 * 119.99893 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1935 0.0000 4 6 3.5829 1.1950 -0.0063 5 17 4.4458 2.7014 -0.0141 6 6 4.2824 -0.0007 -0.0058 7 6 3.6027 -1.2002 0.0000 8 6 2.2064 -1.2081 0.0058 9 6 1.4718 -2.4905 0.0125 10 8 0.5746 -2.6812 -0.7853 11 7 1.7966 -3.4485 0.9031 12 6 2.9435 -3.2609 1.7951 13 6 1.0028 -4.6775 0.9791 14 6 1.5884 -5.7225 0.0273 15 1 2.6183 -5.9370 0.3124 16 8 1.5593 -5.2186 -1.3096 17 6 0.7590 -7.0058 0.1063 18 7 1.3877 -8.0447 -0.7133 19 6 1.0213 -8.1860 -2.1247 20 6 2.3177 -8.8838 -0.1601 21 1 2.2914 -9.0964 0.8985 22 6 3.2943 -9.4613 -0.9598 23 7 3.4301 -9.0792 -2.2120 24 14 4.4157 -10.7806 -0.2589 25 1 3.8027 -12.1162 -0.4728 26 1 5.7327 -10.7253 -0.9428 27 1 4.6032 -10.5491 1.1959 28 1 -0.3633 -0.0988 1.0229 29 1 -0.3633 0.9354 -0.4258 30 1 -0.3634 -0.8363 -0.5971 31 1 1.6581 2.1289 -0.0004 32 1 5.3624 0.0066 -0.0103 33 1 4.1490 -2.1318 -0.0001 34 1 3.8559 -3.5665 1.2830 35 1 3.0183 -2.2101 2.0747 36 1 2.8096 -3.8666 2.6914 37 1 -0.0271 -4.4630 0.6940 38 1 1.0250 -5.0618 1.9989 39 1 0.6722 -5.0056 -1.6304 40 1 0.7072 -7.3418 1.1419 41 1 -0.2478 -6.8111 -0.2633 42 1 1.7225 -7.6226 -2.7402 43 1 1.0557 -9.2386 -2.4054 44 1 0.0128 -7.8017 -2.2785 45 1 4.1124 -9.4831 -2.7710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278873564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -57.443523 kcal Electronic energy + Delta-G solvation = -27750.114169 eV Core-core repulsion = 23793.703948 eV Total energy + Delta-G solvation = -3956.410221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62730 -39.82009 -38.60231 -37.48402 -36.79928 -36.10802 -33.76263 -33.27710 -32.43667 -30.85404 -28.32955 -28.16079 -27.78010 -26.84775 -24.59706 -23.58626 -22.66515 -22.14476 -20.57329 -18.77788 -18.45979 -17.82398 -17.44894 -17.14852 -16.90529 -16.51492 -16.30807 -15.79772 -15.55173 -15.35471 -15.01837 -14.86060 -14.69709 -14.52166 -14.23393 -13.96062 -13.77618 -13.64354 -13.41315 -13.18270 -13.09622 -13.00388 -12.80063 -12.63961 -12.50119 -12.48622 -12.16171 -12.12901 -12.05289 -11.94255 -11.84790 -11.74605 -11.18324 -10.84286 -10.58765 -9.97037 -9.73500 -9.58323 -8.62464 -7.78780 -5.31697 -0.28040 0.17732 1.02184 1.46217 1.47532 1.56382 1.64221 1.99711 2.49635 2.52090 3.32983 3.43634 3.65199 3.65709 3.72435 3.79926 4.07418 4.15070 4.23930 4.25006 4.26910 4.39390 4.50970 4.59127 4.62468 4.64794 4.72786 4.73512 4.78745 4.87785 4.89241 5.01662 5.02800 5.09565 5.17385 5.30456 5.32584 5.39680 5.50813 5.62296 5.65992 5.80830 6.35626 6.36830 7.01486 7.14033 7.17813 7.89670 8.36702 9.23719 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002541 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.795018 B =11018.585101 C =11799.946835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.031 4.031 3 C -0.116 4.116 4 C -0.017 4.017 5 Cl -0.059 7.059 6 C -0.120 4.120 7 C -0.074 4.074 8 C -0.138 4.138 9 C 0.561 3.439 10 O -0.558 6.558 11 N -0.601 5.601 12 C 0.070 3.930 13 C 0.093 3.907 14 C 0.082 3.918 15 H 0.063 0.937 16 O -0.564 6.564 17 C 0.122 3.878 18 N -0.610 5.610 19 C 0.186 3.814 20 C -0.263 4.263 21 H 0.075 0.925 22 C -0.055 4.055 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.262 1.262 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.367 0.633 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.002 0.998 43 H 0.009 0.991 44 H 0.023 0.977 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 23.348 11.019 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.032 4.032 3 C -0.134 4.134 4 C -0.044 4.044 5 Cl -0.030 7.030 6 C -0.139 4.139 7 C -0.093 4.093 8 C -0.141 4.141 9 C 0.350 3.650 10 O -0.438 6.438 11 N -0.332 5.332 12 C -0.072 4.072 13 C -0.030 4.030 14 C 0.020 3.980 15 H 0.081 0.919 16 O -0.369 6.369 17 C -0.005 4.005 18 N -0.333 5.333 19 C 0.041 3.959 20 C -0.394 4.394 21 H 0.093 0.907 22 C -0.250 4.250 23 N -0.583 5.583 24 Si 0.797 3.203 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.187 1.187 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.214 0.786 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.028 0.972 44 H 0.041 0.959 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.057 23.206 10.568 25.582 hybrid contribution 0.534 -0.842 -0.304 1.043 sum -1.524 22.363 10.264 24.653 Atomic orbital electron populations 1.21053 0.89325 1.04675 1.03550 1.19999 0.97311 0.90730 0.95189 1.21075 0.91943 0.98818 1.01599 1.21232 0.92752 0.87686 1.02751 1.98387 1.76725 1.31259 1.96671 1.21169 1.01669 0.89813 1.01207 1.21431 0.92336 0.99081 0.96443 1.19900 0.94465 0.93091 1.06659 1.18468 0.82694 0.83765 0.80092 1.90678 1.33171 1.81001 1.38918 1.47743 1.31360 1.17318 1.36758 1.22171 0.87366 1.03696 0.93991 1.22296 0.95561 0.83638 1.01517 1.22951 1.00197 0.92832 0.82068 0.91853 1.86599 1.33505 1.86179 1.30655 1.21662 0.94772 0.87989 0.96115 1.44014 1.46768 1.34637 1.07834 1.20430 0.93554 0.97162 0.84793 1.19551 1.05432 1.20236 0.94157 0.90723 1.25978 0.99229 1.02881 0.96914 1.70276 1.35533 1.44651 1.07824 0.85243 0.77754 0.79014 0.78277 1.21396 1.22554 1.18680 0.89935 0.89169 0.90932 0.82369 0.82564 0.84121 0.92675 0.89600 0.88694 0.89857 0.86924 0.78578 0.91427 0.92371 0.97996 0.97243 0.95861 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.52 71.24 0.68 -1.71 16 2 C -0.03 -0.63 5.91 -19.61 -0.12 -0.75 16 3 C -0.12 -1.93 9.44 22.25 0.21 -1.72 16 4 C -0.02 -0.29 6.33 22.40 0.14 -0.15 16 5 Cl -0.06 -0.90 28.95 -2.72 -0.08 -0.98 16 6 C -0.12 -2.05 9.81 22.25 0.22 -1.83 16 7 C -0.07 -1.51 7.80 22.52 0.18 -1.34 16 8 C -0.14 -3.26 4.87 -20.09 -0.10 -3.36 16 9 C 0.56 16.01 6.31 86.77 0.55 16.56 16 10 O -0.56 -19.25 12.95 8.98 0.12 -19.14 16 11 N -0.60 -15.18 2.83 -850.26 -2.40 -17.58 16 12 C 0.07 1.28 9.12 127.77 1.16 2.45 16 13 C 0.09 2.45 5.18 86.38 0.45 2.90 16 14 C 0.08 3.00 3.48 30.59 0.11 3.11 16 15 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 16 O -0.56 -23.96 11.60 -136.07 -1.58 -25.53 16 17 C 0.12 4.69 5.37 86.38 0.46 5.16 16 18 N -0.61 -30.94 2.88 -726.93 -2.09 -33.03 16 19 C 0.19 9.73 8.61 127.77 1.10 10.83 16 20 C -0.26 -14.43 9.63 84.03 0.81 -13.62 16 21 H 0.08 3.86 7.84 -2.91 -0.02 3.84 16 22 C -0.05 -3.12 5.18 84.86 0.44 -2.68 16 23 N -0.94 -57.57 10.70 21.65 0.23 -57.34 16 24 Si 0.97 45.31 29.56 68.60 2.03 47.34 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.24 8.05 -2.38 -0.02 1.22 16 30 H 0.07 1.78 5.73 -2.39 -0.01 1.76 16 31 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.14 2.83 6.35 -2.91 -0.02 2.81 16 34 H 0.05 1.08 7.08 -2.39 -0.02 1.06 16 35 H 0.09 1.30 6.31 -2.39 -0.02 1.28 16 36 H 0.09 1.37 7.83 -2.39 -0.02 1.35 16 37 H 0.08 2.20 7.49 -2.39 -0.02 2.18 16 38 H 0.11 2.28 7.86 -2.39 -0.02 2.26 16 39 H 0.37 14.32 8.31 -74.05 -0.62 13.70 16 40 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 41 H 0.06 2.03 7.86 -2.39 -0.02 2.01 16 42 H 0.00 0.10 7.33 -2.39 -0.02 0.08 16 43 H 0.01 0.50 7.41 -2.39 -0.02 0.48 16 44 H 0.02 1.04 7.85 -2.38 -0.02 1.02 16 45 H 0.24 14.69 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -72.88 379.41 2.91 -69.98 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.40 Total: 22.47 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.29 Total: 13.83 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -4.26 Total: -107.96 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.46 Total: -44.67 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -72.88 2.91 -69.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278873564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.532 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds