Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86793 * 120.00300 * 2 1 4 4 H 1.48499 * 109.47202 * 270.00405 * 3 2 1 5 5 H 1.48509 * 109.46941 * 29.99863 * 3 2 1 6 6 H 1.48497 * 109.47494 * 150.00021 * 3 2 1 7 7 C 1.38804 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00307 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47461 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00058 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00317 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64591 * 359.96620 * 13 11 10 15 15 C 1.54907 * 104.83020 * 155.91917 * 14 13 11 16 16 C 1.55158 * 101.58221 * 37.01407 * 15 14 13 17 17 H 1.09004 * 110.72183 * 83.03557 * 16 15 14 18 18 N 1.46498 * 110.71885 * 206.13123 * 16 15 14 19 19 C 1.34777 * 119.99828 * 204.72041 * 18 16 15 20 20 O 1.21613 * 119.99962 * 0.28066 * 19 18 16 21 21 C 1.47108 * 120.00078 * 180.27699 * 19 18 16 22 22 C 1.32083 * 118.87485 * 179.73273 * 21 19 18 23 23 C 1.50271 * 122.57781 * 180.14631 * 22 21 19 24 24 O 1.42892 * 110.14306 * 344.80334 * 23 22 21 25 25 C 1.43276 * 113.09807 * 50.32972 * 24 23 22 26 26 C 1.50415 * 118.87551 * 0.02562 * 21 19 18 27 27 C 1.47024 * 125.65090 * 180.02562 * 13 11 10 28 28 H 0.96999 * 119.99863 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47287 * 59.99311 * 10 9 7 30 30 H 1.09007 * 109.46979 * 299.99803 * 10 9 7 31 31 H 1.09001 * 110.36127 * 37.08681 * 14 13 11 32 32 H 1.08998 * 110.46021 * 274.80999 * 14 13 11 33 33 H 1.08999 * 111.00836 * 278.93616 * 15 14 13 34 34 H 1.09003 * 111.03557 * 155.10055 * 15 14 13 35 35 H 0.97001 * 120.00384 * 25.00488 * 18 16 15 36 36 H 1.08000 * 118.71588 * 0.38943 * 22 21 19 37 37 H 1.08992 * 109.50065 * 224.49389 * 23 22 21 38 38 H 1.09006 * 109.17754 * 104.90813 * 23 22 21 39 39 H 1.09005 * 109.63460 * 171.47293 * 25 24 23 40 40 H 1.09000 * 109.80882 * 50.95920 * 25 24 23 41 41 H 1.09004 * 109.45519 * 283.35192 * 26 21 19 42 42 H 1.09002 * 109.45167 * 43.30613 * 26 21 19 43 43 H 1.08995 * 109.88147 * 61.59524 * 27 13 11 44 44 H 1.08995 * 109.88323 * 300.42839 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3432 -0.0008 14 6 4.3151 -6.2449 -0.0004 15 6 4.8017 -7.5825 0.6110 16 6 3.7729 -8.5853 0.0251 17 1 4.0610 -8.8898 -0.9811 18 7 3.6328 -9.7535 0.8980 19 6 3.2132 -10.9287 0.3889 20 8 2.9557 -11.0207 -0.7961 21 6 3.0668 -12.1002 1.2665 22 6 2.6488 -13.2395 0.7451 23 6 2.4667 -14.4858 1.5646 24 8 3.1259 -14.3468 2.8248 25 6 2.7886 -13.1315 3.5045 26 6 3.3917 -11.9579 2.7282 27 6 2.4665 -7.7641 -0.0018 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7314 0.8894 30 1 3.1245 -3.7315 -0.8906 31 1 4.6390 -5.4061 0.6157 32 1 4.6898 -6.1343 -1.0180 33 1 4.7469 -7.5575 1.6993 34 1 5.8121 -7.8202 0.2782 35 1 3.8382 -9.6801 1.8432 36 1 2.4331 -13.2780 -0.3125 37 1 2.8859 -15.3377 1.0294 38 1 1.4024 -14.6533 1.7300 39 1 3.1974 -13.1513 4.5148 40 1 1.7050 -13.0222 3.5499 41 1 4.4736 -11.9529 2.8608 42 1 2.9758 -11.0227 3.1031 43 1 1.9011 -7.9967 -0.9041 44 1 1.8687 -7.9895 0.8812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283330517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -95.517351 kcal Electronic energy + Delta-G solvation = -26274.669058 eV Core-core repulsion = 22318.651539 eV Total energy + Delta-G solvation = -3956.017520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83746 -39.84912 -39.00472 -37.30884 -34.67164 -34.12805 -32.44320 -31.71112 -30.96105 -29.75311 -28.12372 -26.48290 -25.49859 -24.41744 -23.59354 -22.10796 -21.19438 -19.43995 -18.96650 -18.11853 -17.69855 -17.21113 -16.67823 -16.57203 -15.95244 -15.73015 -15.47110 -15.14778 -14.92671 -14.81579 -14.27466 -14.12685 -14.02342 -13.88317 -13.57159 -13.23816 -13.07377 -12.88157 -12.58623 -12.51722 -12.23496 -12.09981 -11.94692 -11.82136 -11.38420 -11.17563 -11.07411 -11.03661 -10.78017 -10.64234 -10.05639 -9.84013 -9.70541 -9.57116 -9.35966 -9.08009 -8.56801 -8.25015 -6.52101 -6.22950 -3.93926 0.84636 2.55141 2.81163 2.97674 3.03831 3.21263 3.24890 3.28993 3.32395 3.59512 4.01903 4.11328 4.17964 4.20568 4.28088 4.29634 4.62968 4.66443 4.69569 4.82026 4.89624 4.97506 5.01860 5.04329 5.07700 5.12133 5.15382 5.31264 5.39133 5.42037 5.56083 5.61291 5.66629 5.73779 5.78481 5.88718 5.91421 6.08813 6.10787 6.35561 6.49656 7.06181 7.57707 7.60556 7.79579 8.33694 8.52017 9.22148 10.84473 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.001800 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.102226 B =15554.358601 C =15696.367143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.139 4.139 16 C 0.134 3.866 17 H 0.109 0.891 18 N -0.716 5.716 19 C 0.554 3.446 20 O -0.536 6.536 21 C -0.170 4.170 22 C -0.109 4.109 23 C 0.083 3.917 24 O -0.377 6.377 25 C 0.059 3.941 26 C -0.121 4.121 27 C 0.100 3.900 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.201 -27.362 6.319 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.387 6.387 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.177 4.177 16 C 0.028 3.972 17 H 0.127 0.873 18 N -0.367 5.367 19 C 0.342 3.658 20 O -0.414 6.414 21 C -0.173 4.173 22 C -0.129 4.129 23 C 0.007 3.993 24 O -0.295 6.295 25 C -0.018 4.018 26 C -0.158 4.158 27 C -0.025 4.025 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.239 0.761 36 H 0.155 0.845 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.132 -27.659 5.544 29.973 hybrid contribution 1.905 1.646 0.252 2.530 sum 12.037 -26.013 5.796 29.243 Atomic orbital electron populations 1.70021 1.05957 1.27477 1.46779 1.25000 0.95037 0.99043 0.94527 0.86159 0.79382 0.81532 0.78365 1.20255 1.20742 1.19698 1.22854 0.94892 0.91577 1.59036 0.90906 1.85434 1.04904 0.96344 1.96714 1.23506 1.06522 0.94819 1.04829 1.20070 0.85674 0.85403 0.75188 1.90720 1.14973 1.85090 1.47905 1.48450 1.06593 1.05341 1.76058 1.22268 0.80546 0.97842 1.01471 1.23093 0.99106 0.94006 1.01502 1.22015 0.94707 0.84588 0.95902 0.87289 1.45845 1.68659 1.09573 1.12650 1.18448 0.76503 0.83095 0.87712 1.90820 1.49767 1.84638 1.16169 1.20820 1.06347 0.94209 0.95932 1.23767 0.93224 0.93961 1.01901 1.21628 0.98166 0.95643 0.83874 1.88151 1.69260 1.39983 1.32106 1.22661 0.99653 0.83416 0.96074 1.21090 1.02798 1.00382 0.91513 1.22219 0.96556 0.80784 1.02925 0.92162 0.89253 0.89197 0.89660 0.90816 0.89853 0.88963 0.76119 0.84488 0.86784 0.90647 0.87871 0.92244 0.89252 0.89492 0.90897 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.98 5.16 36.00 0.19 -2.80 16 11 C 0.55 10.70 7.87 -10.99 -0.09 10.61 16 12 O -0.51 -12.20 16.19 5.55 0.09 -12.11 16 13 N -0.63 -9.02 3.33 -170.52 -0.57 -9.59 16 14 C 0.10 1.01 6.69 -2.53 -0.02 0.99 16 15 C -0.14 -0.96 6.71 -24.58 -0.17 -1.12 16 16 C 0.13 1.23 3.32 -66.10 -0.22 1.01 16 17 H 0.11 1.11 7.55 -51.93 -0.39 0.72 16 18 N -0.72 -5.65 5.05 -53.21 -0.27 -5.92 16 19 C 0.55 5.58 7.73 -12.66 -0.10 5.49 16 20 O -0.54 -7.46 15.70 5.27 0.08 -7.38 16 21 C -0.17 -1.32 5.86 -103.09 -0.60 -1.92 16 22 C -0.11 -0.79 9.58 -36.44 -0.35 -1.14 16 23 C 0.08 0.45 7.04 35.80 0.25 0.70 16 24 O -0.38 -2.66 10.83 -35.23 -0.38 -3.04 16 25 C 0.06 0.29 6.87 37.21 0.26 0.55 16 26 C -0.12 -0.61 5.29 -27.97 -0.15 -0.75 16 27 C 0.10 1.29 6.62 -3.06 -0.02 1.27 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.66 7.85 -51.92 -0.41 1.25 16 30 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 31 H 0.09 0.80 7.48 -51.93 -0.39 0.41 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.49 8.01 -51.93 -0.42 0.08 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 2.11 6.87 -40.82 -0.28 1.83 16 36 H 0.14 1.09 7.29 -52.49 -0.38 0.71 16 37 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.27 8.10 -51.93 -0.42 -0.15 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.32 7.31 -51.93 -0.38 -0.06 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -37.91 379.23 -9.06 -46.96 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.41 Total: -1.60 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.81 Total: -0.05 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.10 Total: -40.93 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.21 Total: -22.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.91 -9.06 -46.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283330517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.555 kcal (2) G-P(sol) polarization free energy of solvation -37.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds