Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86793 * 120.00300 * 2 1 4 4 H 1.48499 * 109.47202 * 270.00405 * 3 2 1 5 5 H 1.48509 * 109.46941 * 29.99863 * 3 2 1 6 6 H 1.48497 * 109.47494 * 150.00021 * 3 2 1 7 7 C 1.38804 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00307 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47461 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00058 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00317 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64591 * 359.96620 * 13 11 10 15 15 C 1.54907 * 104.83020 * 155.91917 * 14 13 11 16 16 C 1.55158 * 101.58221 * 37.01407 * 15 14 13 17 17 H 1.09004 * 110.72183 * 83.03557 * 16 15 14 18 18 N 1.46498 * 110.71885 * 206.13123 * 16 15 14 19 19 C 1.34777 * 119.99828 * 204.72041 * 18 16 15 20 20 O 1.21613 * 119.99962 * 0.28066 * 19 18 16 21 21 C 1.47108 * 120.00078 * 180.27699 * 19 18 16 22 22 C 1.32083 * 118.87485 * 179.73273 * 21 19 18 23 23 C 1.50271 * 122.57781 * 180.14631 * 22 21 19 24 24 O 1.42892 * 110.14306 * 344.80334 * 23 22 21 25 25 C 1.43276 * 113.09807 * 50.32972 * 24 23 22 26 26 C 1.50415 * 118.87551 * 0.02562 * 21 19 18 27 27 C 1.47024 * 125.65090 * 180.02562 * 13 11 10 28 28 H 0.96999 * 119.99863 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47287 * 59.99311 * 10 9 7 30 30 H 1.09007 * 109.46979 * 299.99803 * 10 9 7 31 31 H 1.09001 * 110.36127 * 37.08681 * 14 13 11 32 32 H 1.08998 * 110.46021 * 274.80999 * 14 13 11 33 33 H 1.08999 * 111.00836 * 278.93616 * 15 14 13 34 34 H 1.09003 * 111.03557 * 155.10055 * 15 14 13 35 35 H 0.97001 * 120.00384 * 25.00488 * 18 16 15 36 36 H 1.08000 * 118.71588 * 0.38943 * 22 21 19 37 37 H 1.08992 * 109.50065 * 224.49389 * 23 22 21 38 38 H 1.09006 * 109.17754 * 104.90813 * 23 22 21 39 39 H 1.09005 * 109.63460 * 171.47293 * 25 24 23 40 40 H 1.09000 * 109.80882 * 50.95920 * 25 24 23 41 41 H 1.09004 * 109.45519 * 283.35192 * 26 21 19 42 42 H 1.09002 * 109.45167 * 43.30613 * 26 21 19 43 43 H 1.08995 * 109.88147 * 61.59524 * 27 13 11 44 44 H 1.08995 * 109.88323 * 300.42839 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3432 -0.0008 14 6 4.3151 -6.2449 -0.0004 15 6 4.8017 -7.5825 0.6110 16 6 3.7729 -8.5853 0.0251 17 1 4.0610 -8.8898 -0.9811 18 7 3.6328 -9.7535 0.8980 19 6 3.2132 -10.9287 0.3889 20 8 2.9557 -11.0207 -0.7961 21 6 3.0668 -12.1002 1.2665 22 6 2.6488 -13.2395 0.7451 23 6 2.4667 -14.4858 1.5646 24 8 3.1259 -14.3468 2.8248 25 6 2.7886 -13.1315 3.5045 26 6 3.3917 -11.9579 2.7282 27 6 2.4665 -7.7641 -0.0018 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7314 0.8894 30 1 3.1245 -3.7315 -0.8906 31 1 4.6390 -5.4061 0.6157 32 1 4.6898 -6.1343 -1.0180 33 1 4.7469 -7.5575 1.6993 34 1 5.8121 -7.8202 0.2782 35 1 3.8382 -9.6801 1.8432 36 1 2.4331 -13.2780 -0.3125 37 1 2.8859 -15.3377 1.0294 38 1 1.4024 -14.6533 1.7300 39 1 3.1974 -13.1513 4.5148 40 1 1.7050 -13.0222 3.5499 41 1 4.4736 -11.9529 2.8608 42 1 2.9758 -11.0227 3.1031 43 1 1.9011 -7.9967 -0.9041 44 1 1.8687 -7.9895 0.8812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283330517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -123.884035 kcal Electronic energy + Delta-G solvation = -26275.899130 eV Core-core repulsion = 22318.651539 eV Total energy + Delta-G solvation = -3957.247592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.63563 -40.86884 -39.76199 -38.49504 -35.57494 -34.75066 -34.59097 -32.38358 -31.87979 -30.91733 -29.22853 -27.68571 -27.05683 -25.01113 -24.46290 -22.79417 -22.02591 -20.76569 -19.81120 -19.43692 -18.62157 -18.23560 -17.84564 -17.29714 -16.89023 -16.76467 -16.65718 -16.33510 -16.08869 -15.87106 -15.66883 -15.31536 -14.83335 -14.58163 -14.54770 -14.46670 -14.04395 -13.73595 -13.66327 -13.50229 -13.31826 -13.16781 -12.92430 -12.89124 -12.77458 -12.62011 -12.52616 -11.95362 -11.83186 -11.73546 -11.27598 -11.14778 -11.07607 -10.62233 -10.40753 -10.29116 -10.09662 -9.80284 -8.69706 -8.35147 -6.14379 0.21966 1.20022 1.42700 1.43063 1.50289 1.55309 1.84443 2.08877 2.21169 2.26739 2.92512 2.99153 3.19575 3.35718 3.46284 3.55776 3.68419 3.84365 3.86330 3.97484 4.10771 4.21820 4.25072 4.29000 4.30691 4.42494 4.44265 4.52037 4.58555 4.67060 4.69979 4.72715 4.81131 4.92072 4.96435 5.01834 5.20726 5.24339 5.34891 5.41325 5.43613 6.09435 6.19275 6.29629 6.40888 7.03980 7.05905 7.07900 8.74184 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.001800 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.102226 B =15554.358601 C =15696.367143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.156 6.156 10 C -0.117 4.117 11 C 0.545 3.455 12 O -0.570 6.570 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.119 4.119 16 C 0.143 3.857 17 H 0.101 0.899 18 N -0.700 5.700 19 C 0.549 3.451 20 O -0.583 6.583 21 C -0.181 4.181 22 C -0.110 4.110 23 C 0.084 3.916 24 O -0.394 6.394 25 C 0.053 3.947 26 C -0.116 4.116 27 C 0.098 3.902 28 H 0.271 0.729 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.419 0.581 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.714 -27.692 7.784 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.071 5.929 10 C -0.268 4.268 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.350 5.350 14 C -0.033 4.033 15 C -0.157 4.157 16 C 0.037 3.963 17 H 0.119 0.881 18 N -0.352 5.352 19 C 0.339 3.661 20 O -0.464 6.464 21 C -0.184 4.184 22 C -0.130 4.130 23 C 0.008 3.992 24 O -0.313 6.313 25 C -0.023 4.023 26 C -0.153 4.153 27 C -0.027 4.027 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.258 0.742 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.064 0.936 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.722 -28.022 7.049 31.988 hybrid contribution 0.830 1.590 -0.236 1.810 sum 14.552 -26.432 6.813 30.933 Atomic orbital electron populations 1.70195 1.08059 1.28630 1.47984 1.26168 0.95978 1.03425 0.93705 0.84922 0.78254 0.75829 0.78776 1.19396 1.20368 1.17898 1.23193 0.95401 0.91684 1.58912 0.89628 1.85670 1.10676 0.99464 1.97060 1.23290 1.03413 0.93344 1.06771 1.19915 0.85393 0.86119 0.75269 1.90697 1.17387 1.85823 1.50943 1.48358 1.08448 1.04804 1.73436 1.22728 0.77179 1.00262 1.03159 1.23105 0.99529 0.90660 1.02394 1.21850 0.93203 0.84914 0.96370 0.88089 1.45708 1.67629 1.08519 1.13359 1.18915 0.75647 0.84143 0.87392 1.90798 1.51929 1.85446 1.18269 1.20942 1.07106 0.93243 0.97153 1.23926 0.92549 0.94871 1.01609 1.21754 0.99030 0.95031 0.83384 1.88129 1.69709 1.40930 1.32483 1.22844 1.00016 0.82690 0.96749 1.21142 1.03607 1.01167 0.89384 1.22312 0.98606 0.80502 1.01274 0.92005 0.86836 0.87315 0.88297 0.89373 0.87964 0.85664 0.74193 0.85868 0.85269 0.89327 0.86040 0.92047 0.88119 0.88015 0.93643 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.54 -30.93 9.50 67.96 0.65 -30.28 16 8 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.12 -4.70 5.16 71.23 0.37 -4.34 16 11 C 0.54 21.40 7.87 87.65 0.69 22.09 16 12 O -0.57 -28.32 16.19 -3.05 -0.05 -28.36 16 13 N -0.62 -17.10 3.33 -811.80 -2.70 -19.80 16 14 C 0.09 1.45 6.69 86.85 0.58 2.03 16 15 C -0.12 -1.15 6.71 31.99 0.21 -0.93 16 16 C 0.14 2.37 3.32 46.18 0.15 2.52 16 17 H 0.10 1.93 7.55 -2.38 -0.02 1.92 16 18 N -0.70 -9.77 5.05 -440.50 -2.22 -11.99 16 19 C 0.55 10.79 7.73 86.57 0.67 11.45 16 20 O -0.58 -16.68 15.70 -4.07 -0.06 -16.75 16 21 C -0.18 -2.63 5.86 -18.58 -0.11 -2.74 16 22 C -0.11 -1.56 9.58 24.59 0.24 -1.32 16 23 C 0.08 0.81 7.04 71.10 0.50 1.31 16 24 O -0.39 -4.85 10.83 -148.98 -1.61 -6.46 16 25 C 0.05 0.42 6.87 72.02 0.50 0.91 16 26 C -0.12 -0.90 5.29 29.79 0.16 -0.74 16 27 C 0.10 2.51 6.62 86.73 0.57 3.09 16 28 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.11 3.99 7.85 -2.40 -0.02 3.97 16 30 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.10 1.43 7.48 -2.39 -0.02 1.41 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 0.69 8.01 -2.39 -0.02 0.67 16 34 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.42 3.12 6.87 -92.71 -0.64 2.48 16 36 H 0.12 2.07 7.29 -2.91 -0.02 2.05 16 37 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.06 0.45 8.10 -2.39 -0.02 0.43 16 41 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.10 0.47 7.31 -2.39 -0.02 0.45 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.68 8.03 -2.39 -0.02 1.66 16 Total: -1.00 -87.62 379.23 0.53 -87.10 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.38 Total: 12.67 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.64 Total: 4.19 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -4.64 Total: -87.74 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -1.73 Total: -51.57 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -87.62 0.53 -87.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283330517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.788 kcal (2) G-P(sol) polarization free energy of solvation -87.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds