Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48503 * 109.46913 * 270.00126 * 3 2 1 5 5 H 1.48500 * 109.47212 * 29.99594 * 3 2 1 6 6 H 1.48492 * 109.47493 * 149.99916 * 3 2 1 7 7 C 1.38799 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00251 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00093 * 179.97438 * 7 2 1 10 10 C 1.81001 * 99.99862 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 17 17 H 1.09000 * 110.89538 * 277.26533 * 16 15 14 18 18 N 1.46502 * 111.07038 * 153.48335 * 16 15 14 19 19 C 1.34783 * 119.99989 * 161.20904 * 18 16 15 20 20 O 1.21622 * 119.99627 * 0.02562 * 19 18 16 21 21 C 1.47093 * 119.99911 * 180.02562 * 19 18 16 22 22 C 1.32092 * 118.87645 * 179.73370 * 21 19 18 23 23 C 1.50267 * 122.58021 * 180.10312 * 22 21 19 24 24 O 1.42890 * 110.14686 * 344.83615 * 23 22 21 25 25 C 1.43276 * 113.09965 * 50.31880 * 24 23 22 26 26 C 1.50416 * 118.87930 * 359.97438 * 21 19 18 27 27 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 28 28 H 0.97002 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46773 * 60.00483 * 10 9 7 30 30 H 1.08995 * 109.47418 * 300.00222 * 10 9 7 31 31 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 32 32 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 33 33 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 34 34 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 35 35 H 0.96999 * 120.00092 * 341.21066 * 18 16 15 36 36 H 1.08001 * 118.70633 * 0.37177 * 22 21 19 37 37 H 1.09004 * 109.50970 * 224.52141 * 23 22 21 38 38 H 1.08997 * 109.16592 * 104.93871 * 23 22 21 39 39 H 1.09002 * 109.63685 * 171.47321 * 25 24 23 40 40 H 1.08999 * 109.64244 * 50.85165 * 25 24 23 41 41 H 1.08998 * 109.45455 * 283.37701 * 26 21 19 42 42 H 1.08994 * 109.45379 * 43.31313 * 26 21 19 43 43 H 1.08999 * 110.36956 * 322.93474 * 27 13 11 44 44 H 1.09003 * 110.36599 * 85.25378 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0456 -4.4947 -0.0001 14 6 5.2272 -5.7161 0.0001 15 6 6.1934 -6.9191 -0.0287 16 6 7.4953 -6.3022 -0.6115 17 1 7.4522 -6.2604 -1.6999 18 7 8.6763 -7.0444 -0.1636 19 6 9.8407 -6.9251 -0.8319 20 8 9.9110 -6.2009 -1.8064 21 6 11.0263 -7.6708 -0.3825 22 6 12.1547 -7.5415 -1.0569 23 6 13.4143 -8.2654 -0.6731 24 8 13.2998 -8.7824 0.6541 25 6 12.0952 -9.5289 0.8646 26 6 10.9110 -8.5587 0.8261 27 6 7.4688 -4.8792 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 3.6433 -3.4317 -0.8896 30 1 3.6439 -3.4314 0.8903 31 1 4.6162 -5.7528 0.9020 32 1 4.5872 -5.7335 -0.8821 33 1 6.3650 -7.3001 0.9781 34 1 5.8113 -7.7053 -0.6799 35 1 8.6202 -7.6218 0.6138 36 1 12.1737 -6.8865 -1.9154 37 1 14.2586 -7.5777 -0.7216 38 1 13.5802 -9.0881 -1.3685 39 1 12.1342 -10.0208 1.8365 40 1 11.9839 -10.2746 0.0774 41 1 10.9134 -7.9465 1.7279 42 1 9.9805 -9.1239 0.7739 43 1 8.0481 -4.1908 -0.6147 44 1 7.8565 -4.8970 1.0191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283997117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -95.226372 kcal Electronic energy + Delta-G solvation = -26297.991722 eV Core-core repulsion = 22341.986820 eV Total energy + Delta-G solvation = -3956.004902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86028 -39.90619 -39.05075 -37.37574 -34.72485 -34.16721 -32.44258 -31.75285 -31.05329 -29.81823 -28.20013 -26.52117 -25.61345 -24.46627 -23.64970 -22.14839 -21.24215 -19.55903 -18.98242 -18.15611 -17.69782 -17.21720 -16.72738 -16.69450 -15.90655 -15.79531 -15.45225 -15.24210 -15.01709 -14.83508 -14.42810 -14.15059 -14.09599 -13.78813 -13.61078 -13.38597 -13.05160 -13.03243 -12.85715 -12.71102 -12.18400 -12.07768 -12.00972 -11.82917 -11.41959 -11.26462 -11.21308 -11.00358 -10.68943 -10.62094 -10.08724 -9.86633 -9.72543 -9.62728 -9.45268 -9.00306 -8.63051 -8.49985 -6.92465 -6.29134 -4.00993 0.82051 2.44550 2.79367 2.80061 2.93256 3.20606 3.30069 3.34147 3.51431 3.59823 3.96221 4.06840 4.15038 4.24603 4.28426 4.33692 4.56692 4.58284 4.65229 4.70122 4.77098 4.86459 4.93525 4.98054 5.03036 5.10028 5.10270 5.17878 5.28318 5.31943 5.44605 5.56768 5.64169 5.69833 5.73596 5.80658 5.88506 5.98622 6.01265 6.29203 6.46500 7.03013 7.51665 7.77642 7.93871 8.40484 8.41214 9.17140 10.79976 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.001855 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.612260 B =15090.966795 C =15567.686983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.117 4.117 11 C 0.548 3.452 12 O -0.514 6.514 13 N -0.624 5.624 14 C 0.102 3.898 15 C -0.135 4.135 16 C 0.132 3.868 17 H 0.107 0.893 18 N -0.716 5.716 19 C 0.553 3.447 20 O -0.533 6.533 21 C -0.170 4.170 22 C -0.108 4.108 23 C 0.083 3.917 24 O -0.376 6.376 25 C 0.059 3.941 26 C -0.120 4.120 27 C 0.099 3.901 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.573 -25.836 1.590 34.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.267 4.267 11 C 0.336 3.664 12 O -0.388 6.388 13 N -0.362 5.362 14 C -0.021 4.021 15 C -0.174 4.174 16 C 0.026 3.974 17 H 0.124 0.876 18 N -0.367 5.367 19 C 0.341 3.659 20 O -0.410 6.410 21 C -0.174 4.174 22 C -0.128 4.128 23 C 0.007 3.993 24 O -0.295 6.295 25 C -0.017 4.017 26 C -0.158 4.158 27 C -0.025 4.025 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.672 -23.691 1.036 33.506 hybrid contribution -1.237 -0.614 0.149 1.389 sum 22.435 -24.305 1.185 33.097 Atomic orbital electron populations 1.69934 1.05894 1.27768 1.48052 1.24704 0.94455 0.98960 0.93156 0.86738 0.81901 0.83268 0.79980 1.19177 1.19921 1.15927 1.22301 0.88184 0.97542 1.58828 0.89367 1.84830 1.09359 0.99971 1.97420 1.23251 0.93464 1.04311 1.05720 1.20021 0.90619 0.80520 0.75250 1.90721 1.58876 1.41120 1.48098 1.48350 1.06661 1.05376 1.75848 1.21988 0.94031 0.83124 1.02985 1.22964 0.94202 0.97809 1.02402 1.22169 0.83911 0.90723 1.00582 0.87552 1.45760 1.09947 1.48240 1.32794 1.18452 0.83188 0.81394 0.82842 1.90844 1.84417 1.38988 1.26767 1.20812 0.94225 1.02402 0.99919 1.23781 0.93931 0.96329 0.98780 1.21630 0.95625 0.97472 0.84558 1.88163 1.40459 1.71001 1.29833 1.22669 0.83705 0.92731 1.02634 1.21095 1.00208 0.97867 0.96591 1.22484 0.83431 0.95470 1.01127 0.91938 0.88481 0.88483 0.90567 0.90601 0.89835 0.88988 0.76169 0.84456 0.86714 0.90697 0.87888 0.92367 0.89176 0.89592 0.89745 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.99 27.74 -169.99 -4.71 17.28 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 7 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.32 5.35 36.01 0.19 -2.13 16 11 C 0.55 10.36 7.87 -10.98 -0.09 10.28 16 12 O -0.51 -11.82 16.12 5.55 0.09 -11.73 16 13 N -0.62 -8.75 3.33 -170.51 -0.57 -9.32 16 14 C 0.10 0.97 6.48 -3.07 -0.02 0.95 16 15 C -0.14 -0.85 6.60 -24.76 -0.16 -1.01 16 16 C 0.13 1.18 3.31 -65.64 -0.22 0.97 16 17 H 0.11 1.14 7.73 -51.93 -0.40 0.73 16 18 N -0.72 -5.23 5.18 -52.77 -0.27 -5.51 16 19 C 0.55 5.43 7.73 -12.67 -0.10 5.34 16 20 O -0.53 -7.51 15.80 5.26 0.08 -7.42 16 21 C -0.17 -1.25 5.86 -103.09 -0.60 -1.86 16 22 C -0.11 -0.77 9.58 -36.44 -0.35 -1.12 16 23 C 0.08 0.43 7.04 35.80 0.25 0.68 16 24 O -0.38 -2.55 10.83 -35.23 -0.38 -2.93 16 25 C 0.06 0.25 6.88 37.23 0.26 0.51 16 26 C -0.12 -0.52 5.29 -27.95 -0.15 -0.67 16 27 C 0.10 1.24 6.60 -2.52 -0.02 1.23 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.38 8.00 -51.93 -0.42 -0.04 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.40 1.70 6.83 -40.82 -0.28 1.42 16 36 H 0.14 1.09 7.29 -52.49 -0.38 0.70 16 37 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.06 0.20 8.09 -51.93 -0.42 -0.22 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.19 7.31 -51.93 -0.38 -0.19 16 43 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -38.05 377.64 -8.58 -46.63 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.50 Total: -2.34 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.79 Total: 1.12 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.07 Total: -40.63 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.21 Total: -22.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.05 -8.58 -46.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283997117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.595 kcal (2) G-P(sol) polarization free energy of solvation -38.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds