Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48503 * 109.46913 * 270.00126 * 3 2 1 5 5 H 1.48500 * 109.47212 * 29.99594 * 3 2 1 6 6 H 1.48492 * 109.47493 * 149.99916 * 3 2 1 7 7 C 1.38799 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00251 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00093 * 179.97438 * 7 2 1 10 10 C 1.81001 * 99.99862 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 17 17 H 1.09000 * 110.89538 * 277.26533 * 16 15 14 18 18 N 1.46502 * 111.07038 * 153.48335 * 16 15 14 19 19 C 1.34783 * 119.99989 * 161.20904 * 18 16 15 20 20 O 1.21622 * 119.99627 * 0.02562 * 19 18 16 21 21 C 1.47093 * 119.99911 * 180.02562 * 19 18 16 22 22 C 1.32092 * 118.87645 * 179.73370 * 21 19 18 23 23 C 1.50267 * 122.58021 * 180.10312 * 22 21 19 24 24 O 1.42890 * 110.14686 * 344.83615 * 23 22 21 25 25 C 1.43276 * 113.09965 * 50.31880 * 24 23 22 26 26 C 1.50416 * 118.87930 * 359.97438 * 21 19 18 27 27 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 28 28 H 0.97002 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46773 * 60.00483 * 10 9 7 30 30 H 1.08995 * 109.47418 * 300.00222 * 10 9 7 31 31 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 32 32 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 33 33 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 34 34 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 35 35 H 0.96999 * 120.00092 * 341.21066 * 18 16 15 36 36 H 1.08001 * 118.70633 * 0.37177 * 22 21 19 37 37 H 1.09004 * 109.50970 * 224.52141 * 23 22 21 38 38 H 1.08997 * 109.16592 * 104.93871 * 23 22 21 39 39 H 1.09002 * 109.63685 * 171.47321 * 25 24 23 40 40 H 1.08999 * 109.64244 * 50.85165 * 25 24 23 41 41 H 1.08998 * 109.45455 * 283.37701 * 26 21 19 42 42 H 1.08994 * 109.45379 * 43.31313 * 26 21 19 43 43 H 1.08999 * 110.36956 * 322.93474 * 27 13 11 44 44 H 1.09003 * 110.36599 * 85.25378 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0456 -4.4947 -0.0001 14 6 5.2272 -5.7161 0.0001 15 6 6.1934 -6.9191 -0.0287 16 6 7.4953 -6.3022 -0.6115 17 1 7.4522 -6.2604 -1.6999 18 7 8.6763 -7.0444 -0.1636 19 6 9.8407 -6.9251 -0.8319 20 8 9.9110 -6.2009 -1.8064 21 6 11.0263 -7.6708 -0.3825 22 6 12.1547 -7.5415 -1.0569 23 6 13.4143 -8.2654 -0.6731 24 8 13.2998 -8.7824 0.6541 25 6 12.0952 -9.5289 0.8646 26 6 10.9110 -8.5587 0.8261 27 6 7.4688 -4.8792 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 3.6433 -3.4317 -0.8896 30 1 3.6439 -3.4314 0.8903 31 1 4.6162 -5.7528 0.9020 32 1 4.5872 -5.7335 -0.8821 33 1 6.3650 -7.3001 0.9781 34 1 5.8113 -7.7053 -0.6799 35 1 8.6202 -7.6218 0.6138 36 1 12.1737 -6.8865 -1.9154 37 1 14.2586 -7.5777 -0.7216 38 1 13.5802 -9.0881 -1.3685 39 1 12.1342 -10.0208 1.8365 40 1 11.9839 -10.2746 0.0774 41 1 10.9134 -7.9465 1.7279 42 1 9.9805 -9.1239 0.7739 43 1 8.0481 -4.1908 -0.6147 44 1 7.8565 -4.8970 1.0191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283997117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -124.108972 kcal Electronic energy + Delta-G solvation = -26299.244166 eV Core-core repulsion = 22341.986820 eV Total energy + Delta-G solvation = -3957.257346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63434 -40.89671 -39.76056 -38.51572 -35.60517 -34.75083 -34.68660 -32.41984 -31.89122 -30.94278 -29.25320 -27.87041 -27.07118 -25.02826 -24.46655 -22.80356 -22.02850 -20.85388 -19.85617 -19.42084 -18.62053 -18.23527 -17.92690 -17.28309 -17.14429 -16.76116 -16.64074 -16.27569 -16.11516 -15.77032 -15.66594 -15.37543 -14.92465 -14.77830 -14.58740 -14.48638 -14.25056 -13.93723 -13.67534 -13.48865 -13.43729 -13.35846 -13.03974 -12.84704 -12.71057 -12.63014 -12.50525 -11.93060 -11.88852 -11.84090 -11.28105 -11.18931 -11.13456 -10.62233 -10.55980 -10.41406 -10.11125 -9.79383 -9.03748 -8.53144 -6.24613 0.21977 0.91843 1.29620 1.40223 1.43932 1.49652 1.80174 2.09557 2.19687 2.23869 2.66028 2.85048 2.94385 3.25389 3.44796 3.56866 3.69031 3.75736 3.85757 3.93335 4.11373 4.15043 4.24379 4.28397 4.33047 4.37332 4.44387 4.53552 4.55844 4.68361 4.70487 4.75232 4.82385 4.89815 4.98864 5.04329 5.14940 5.23469 5.36772 5.44538 5.69538 6.09896 6.11764 6.25584 6.42305 6.92120 6.97331 7.09546 8.58960 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.001855 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.612260 B =15090.966795 C =15567.686983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.240 1.240 7 C -0.526 4.526 8 H 0.066 0.934 9 S -0.182 6.182 10 C -0.099 4.099 11 C 0.545 3.455 12 O -0.567 6.567 13 N -0.614 5.614 14 C 0.087 3.913 15 C -0.114 4.114 16 C 0.140 3.860 17 H 0.088 0.912 18 N -0.696 5.696 19 C 0.547 3.453 20 O -0.586 6.586 21 C -0.179 4.179 22 C -0.112 4.112 23 C 0.085 3.915 24 O -0.397 6.397 25 C 0.054 3.946 26 C -0.116 4.116 27 C 0.097 3.903 28 H 0.277 0.723 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.422 0.578 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.045 0.955 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.199 -28.739 2.791 37.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.164 1.164 7 C -0.674 4.674 8 H 0.084 0.916 9 S 0.045 5.955 10 C -0.249 4.249 11 C 0.333 3.667 12 O -0.446 6.446 13 N -0.350 5.350 14 C -0.035 4.035 15 C -0.152 4.152 16 C 0.033 3.967 17 H 0.106 0.894 18 N -0.349 5.349 19 C 0.337 3.663 20 O -0.467 6.467 21 C -0.182 4.182 22 C -0.132 4.132 23 C 0.009 3.991 24 O -0.316 6.316 25 C -0.022 4.022 26 C -0.153 4.153 27 C -0.028 4.028 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.261 0.739 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.063 0.937 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.277 -26.690 2.277 36.151 hybrid contribution -1.384 0.122 -0.249 1.412 sum 22.892 -26.568 2.028 35.129 Atomic orbital electron populations 1.70001 1.07127 1.29008 1.49010 1.25506 0.95265 1.02070 0.92923 0.85910 0.80666 0.79901 0.80160 1.18850 1.18097 1.16362 1.22413 0.89823 0.96824 1.58340 0.91588 1.84824 1.06948 1.06141 1.97593 1.23183 0.94767 0.99550 1.07449 1.19800 0.89749 0.81689 0.75423 1.90698 1.59637 1.43208 1.51058 1.48277 1.08192 1.05225 1.73265 1.22450 0.94696 0.82068 1.04249 1.22987 0.90920 0.96688 1.04632 1.21960 0.86033 0.89131 0.99550 0.89418 1.45576 1.08769 1.47562 1.32946 1.18968 0.84334 0.80809 0.82186 1.90823 1.85279 1.41380 1.29211 1.20944 0.93040 1.02948 1.01279 1.23928 0.95013 0.96045 0.98223 1.21731 0.94709 0.98061 0.84579 1.88136 1.41727 1.71393 1.30378 1.22890 0.82673 0.92646 1.04036 1.21171 1.01678 0.97584 0.94871 1.22591 0.81994 0.96926 1.01261 0.91319 0.86884 0.86488 0.88836 0.89873 0.86781 0.86118 0.73851 0.86204 0.85807 0.88852 0.86099 0.91380 0.88910 0.86938 0.93652 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.55 13.97 21.65 0.30 -55.24 16 2 C 0.05 2.84 5.50 84.86 0.47 3.30 16 3 Si 0.91 45.62 27.74 68.60 1.90 47.52 16 4 H -0.26 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -12.08 6.74 99.48 0.67 -11.41 16 7 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 8 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 9 S -0.18 -9.44 18.55 -56.49 -1.05 -10.48 16 10 C -0.10 -3.85 5.35 71.24 0.38 -3.47 16 11 C 0.55 20.54 7.87 87.66 0.69 21.23 16 12 O -0.57 -26.77 16.12 -3.05 -0.05 -26.82 16 13 N -0.61 -16.47 3.33 -811.75 -2.70 -19.17 16 14 C 0.09 1.36 6.48 86.73 0.56 1.93 16 15 C -0.11 -0.92 6.60 31.87 0.21 -0.71 16 16 C 0.14 2.25 3.31 46.48 0.15 2.40 16 17 H 0.09 1.81 7.73 -2.39 -0.02 1.80 16 18 N -0.70 -8.62 5.18 -439.10 -2.27 -10.90 16 19 C 0.55 10.45 7.73 86.57 0.67 11.12 16 20 O -0.59 -17.22 15.80 -4.10 -0.06 -17.28 16 21 C -0.18 -2.42 5.86 -18.59 -0.11 -2.53 16 22 C -0.11 -1.55 9.58 24.59 0.24 -1.32 16 23 C 0.09 0.78 7.04 71.10 0.50 1.28 16 24 O -0.40 -4.64 10.83 -148.98 -1.61 -6.25 16 25 C 0.05 0.31 6.88 72.03 0.50 0.80 16 26 C -0.12 -0.68 5.29 29.80 0.16 -0.52 16 27 C 0.10 2.37 6.60 86.86 0.57 2.94 16 28 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 30 H 0.12 4.09 8.14 -2.40 -0.02 4.07 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 0.33 8.00 -2.39 -0.02 0.31 16 34 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.42 1.91 6.83 -92.71 -0.63 1.28 16 36 H 0.12 2.05 7.29 -2.91 -0.02 2.03 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.07 0.26 8.09 -2.39 -0.02 0.24 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.11 0.03 7.31 -2.39 -0.02 0.01 16 43 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -87.02 377.64 0.47 -86.55 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.35 Total: 5.74 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.67 Total: 6.34 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.67 Total: -85.31 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -1.73 Total: -50.36 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.05 Total: -10.48 kcal Total: -87.02 0.47 -86.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283997117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.562 kcal (2) G-P(sol) polarization free energy of solvation -87.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds