Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38096 * 120.07761 * 2 1 4 4 Cl 1.73601 * 119.94432 * 0.02562 * 3 2 1 5 5 C 1.38449 * 120.11534 * 180.02562 * 3 2 1 6 6 C 1.38362 * 120.27937 * 0.02562 * 5 3 2 7 7 C 1.37936 * 120.15873 * 359.75115 * 6 5 3 8 8 C 1.39540 * 120.07876 * 180.02562 * 2 1 3 9 9 C 1.47841 * 120.13969 * 359.95997 * 8 2 1 10 10 O 1.21556 * 120.00354 * 50.82418 * 9 8 2 11 11 N 1.34778 * 119.99850 * 230.82293 * 9 8 2 12 12 C 1.46503 * 120.00051 * 355.31448 * 11 9 8 13 13 C 1.46502 * 120.00243 * 175.30489 * 11 9 8 14 14 C 1.53002 * 109.47008 * 90.00142 * 13 11 9 15 15 H 1.09001 * 109.46970 * 60.00133 * 14 13 11 16 16 O 1.42900 * 109.47079 * 300.00366 * 14 13 11 17 17 C 1.52994 * 109.47291 * 179.97438 * 14 13 11 18 18 N 1.46493 * 109.47098 * 185.00157 * 17 14 13 19 19 C 1.46507 * 119.99919 * 269.99913 * 18 17 14 20 20 C 1.36936 * 120.00121 * 90.00486 * 18 17 14 21 21 H 1.07996 * 119.99892 * 330.16636 * 20 18 17 22 22 C 1.38810 * 120.00287 * 149.89836 * 20 18 17 23 23 N 1.31623 * 120.00196 * 1.65254 * 22 20 18 24 24 Si 1.86802 * 120.00340 * 181.65747 * 22 20 18 25 25 H 1.48498 * 109.47062 * 89.99743 * 24 22 20 26 26 H 1.48502 * 109.47260 * 210.00008 * 24 22 20 27 27 H 1.48501 * 109.46524 * 329.99724 * 24 22 20 28 28 H 1.09000 * 109.47263 * 274.44887 * 1 2 3 29 29 H 1.08999 * 109.46939 * 34.44982 * 1 2 3 30 30 H 1.08999 * 109.47180 * 154.45221 * 1 2 3 31 31 H 1.08004 * 119.86254 * 180.02562 * 5 3 2 32 32 H 1.08001 * 119.92041 * 180.02562 * 6 5 3 33 33 H 1.08008 * 120.05840 * 180.25432 * 7 6 5 34 34 H 1.09000 * 109.46565 * 275.47129 * 12 11 9 35 35 H 1.08993 * 109.47379 * 35.46642 * 12 11 9 36 36 H 1.08993 * 109.47622 * 155.47209 * 12 11 9 37 37 H 1.09001 * 109.47146 * 330.00382 * 13 11 9 38 38 H 1.08999 * 109.47114 * 210.00475 * 13 11 9 39 39 H 0.96702 * 113.99959 * 299.99691 * 16 14 13 40 40 H 1.09004 * 109.47000 * 64.99783 * 17 14 13 41 41 H 1.09002 * 109.47154 * 305.00232 * 17 14 13 42 42 H 1.09000 * 109.47297 * 273.40172 * 19 18 17 43 43 H 1.08998 * 109.47043 * 33.40556 * 19 18 17 44 44 H 1.08998 * 109.46741 * 153.40409 * 19 18 17 45 45 H 0.96994 * 120.00606 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1991 1.1950 0.0000 4 17 1.3317 2.6988 0.0007 5 6 3.5836 1.1959 -0.0005 6 6 4.2821 0.0015 -0.0016 7 6 3.6023 -1.1987 0.0030 8 6 2.2064 -1.2075 -0.0005 9 6 1.4721 -2.4906 -0.0002 10 8 0.5925 -2.6878 -0.8157 11 7 1.7779 -3.4418 0.9043 12 6 2.9047 -3.2467 1.8201 13 6 0.9835 -4.6709 0.9720 14 6 1.5905 -5.7224 0.0410 15 1 2.6141 -5.9339 0.3503 16 8 1.5905 -5.2284 -1.2998 17 6 0.7613 -7.0062 0.1122 18 7 1.4086 -8.0505 -0.6856 19 6 1.0727 -8.2030 -2.1035 20 6 2.3275 -8.8841 -0.1062 21 1 2.9305 -8.5333 0.7183 22 6 2.4802 -10.1817 -0.5748 23 7 1.7648 -10.6007 -1.5971 24 14 3.7008 -11.3335 0.2455 25 1 3.0241 -12.0734 1.3408 26 1 4.2209 -12.2986 -0.7562 27 1 4.8279 -10.5441 0.8039 28 1 -0.3634 0.0797 1.0246 29 1 -0.3633 0.8474 -0.5813 30 1 -0.3633 -0.9272 -0.4432 31 1 4.1208 2.1329 -0.0001 32 1 5.3621 0.0090 -0.0016 33 1 4.1492 -2.1301 0.0063 34 1 3.8286 -3.5531 1.3296 35 1 2.9712 -2.1941 2.0952 36 1 2.7527 -3.8476 2.7166 37 1 -0.0401 -4.4594 0.6628 38 1 0.9835 -5.0477 1.9948 39 1 0.7106 -5.0186 -1.6417 40 1 -0.2376 -6.8157 -0.2803 41 1 0.6877 -7.3342 1.1490 42 1 0.2002 -8.8488 -2.2028 43 1 0.8517 -7.2254 -2.5318 44 1 1.9162 -8.6485 -2.6308 45 1 1.8712 -11.5076 -1.9244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284492273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -36.116899 kcal Electronic energy + Delta-G solvation = -27689.589676 eV Core-core repulsion = 23734.104247 eV Total energy + Delta-G solvation = -3955.485429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74314 -38.90722 -37.21477 -36.71493 -35.46625 -34.50540 -33.06638 -31.66806 -31.21135 -29.49977 -27.49976 -27.03159 -25.86430 -25.52621 -23.61435 -22.30026 -21.58107 -20.53578 -19.66176 -17.66185 -16.94757 -16.58438 -16.30711 -16.17561 -15.70984 -15.14925 -14.91452 -14.70547 -14.54314 -14.32515 -13.87484 -13.58104 -13.53736 -13.21526 -13.17690 -12.82221 -12.69028 -12.57942 -12.38484 -12.03184 -11.80166 -11.78650 -11.68865 -11.42788 -11.13656 -11.10624 -10.87384 -10.68529 -10.48704 -10.22305 -10.04561 -9.92324 -9.85922 -9.57327 -9.18612 -9.00283 -8.58795 -8.38810 -6.54086 -5.71485 -3.21755 0.57634 0.81203 1.75077 2.60349 2.92172 3.28195 3.37643 3.43223 3.44959 4.21851 4.38424 4.49436 4.57178 4.63143 4.90662 4.93302 5.05882 5.13387 5.17093 5.30702 5.36056 5.36357 5.44072 5.44799 5.48612 5.56485 5.73082 5.79467 5.89065 5.91349 5.94291 6.01223 6.10096 6.11239 6.33956 6.48698 6.62747 6.78115 7.04727 7.30226 7.55585 7.78068 7.88773 8.11203 8.39427 8.49531 9.29557 9.90275 10.43609 11.33901 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.002346 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.730969 B =11930.280436 C =12410.436043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C -0.046 4.046 4 Cl -0.065 7.065 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.079 4.079 8 C -0.112 4.112 9 C 0.568 3.432 10 O -0.522 6.522 11 N -0.600 5.600 12 C 0.074 3.926 13 C 0.082 3.918 14 C 0.071 3.929 15 H 0.092 0.908 16 O -0.547 6.547 17 C 0.126 3.874 18 N -0.594 5.594 19 C 0.167 3.833 20 C -0.257 4.257 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.906 5.906 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.367 0.633 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.011 0.989 43 H -0.002 1.002 44 H 0.055 0.945 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 25.248 7.539 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.072 4.072 4 Cl -0.036 7.036 5 C -0.109 4.109 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.115 4.115 9 C 0.356 3.644 10 O -0.398 6.398 11 N -0.331 5.331 12 C -0.069 4.069 13 C -0.041 4.041 14 C 0.007 3.993 15 H 0.110 0.890 16 O -0.351 6.351 17 C -0.003 4.003 18 N -0.316 5.316 19 C 0.023 3.977 20 C -0.387 4.387 21 H 0.080 0.920 22 C -0.192 4.192 23 N -0.550 5.550 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.213 0.787 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.017 0.983 44 H 0.074 0.926 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.707 24.970 7.071 26.008 hybrid contribution 0.275 -0.511 0.492 0.761 sum 1.982 24.459 7.564 25.678 Atomic orbital electron populations 1.21170 0.89660 1.05716 1.03030 1.19713 0.97136 0.89946 0.96045 1.20675 0.92411 0.86757 1.07374 1.98364 1.76956 1.31376 1.96928 1.21200 0.91796 0.99472 0.98481 1.21055 1.00491 0.91251 1.00931 1.21537 0.92786 0.99277 0.96181 1.19751 0.93893 0.92993 1.04869 1.18013 0.82777 0.82834 0.80806 1.90710 1.32255 1.79884 1.36993 1.47652 1.32082 1.18313 1.35103 1.21974 0.89145 1.02213 0.93566 1.22478 0.95899 0.84230 1.01493 1.23230 1.01683 0.92413 0.81964 0.89050 1.86552 1.33640 1.86438 1.28494 1.21310 0.93692 0.88991 0.96340 1.43669 1.47035 1.34852 1.05995 1.20781 0.99528 0.93858 0.83535 1.19106 1.12895 0.91296 1.15354 0.91961 1.25240 0.98842 0.96852 0.98277 1.70054 1.42206 1.16994 1.25751 0.86275 0.80583 0.80971 0.78807 1.21371 1.21665 1.20556 0.90747 0.90584 0.88327 0.84632 0.84428 0.84413 0.92193 0.91217 0.90559 0.89854 0.89766 0.78681 0.94289 0.92904 0.97051 0.98325 0.92580 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 36.01 0.33 -1.15 16 2 C -0.03 -0.30 5.91 -104.19 -0.62 -0.91 16 3 C -0.05 -0.44 6.31 -39.56 -0.25 -0.69 16 4 Cl -0.07 -0.58 27.38 -51.86 -1.42 -2.00 16 5 C -0.09 -0.73 9.82 -39.46 -0.39 -1.11 16 6 C -0.12 -0.92 10.03 -39.65 -0.40 -1.31 16 7 C -0.08 -0.76 7.84 -39.19 -0.31 -1.07 16 8 C -0.11 -1.30 4.84 -104.98 -0.51 -1.81 16 9 C 0.57 7.85 6.25 -12.33 -0.08 7.77 16 10 O -0.52 -8.65 12.96 -8.16 -0.11 -8.75 16 11 N -0.60 -7.42 2.83 -182.69 -0.52 -7.94 16 12 C 0.07 0.67 9.13 59.85 0.55 1.22 16 13 C 0.08 1.09 5.18 -4.04 -0.02 1.07 16 14 C 0.07 1.22 3.48 -26.73 -0.09 1.13 16 15 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 16 O -0.55 -10.56 10.82 -48.71 -0.53 -11.09 16 17 C 0.13 2.52 5.34 -4.05 -0.02 2.49 16 18 N -0.59 -15.17 2.88 -181.12 -0.52 -15.69 16 19 C 0.17 4.34 8.82 59.85 0.53 4.87 16 20 C -0.26 -7.09 9.60 -15.06 -0.14 -7.23 16 21 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 22 C 0.01 0.18 5.30 -17.43 -0.09 0.09 16 23 N -0.91 -26.84 10.51 55.49 0.58 -26.26 16 24 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.74 7.10 -51.93 -0.37 0.37 16 30 H 0.10 1.25 5.40 -51.93 -0.28 0.97 16 31 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.14 1.23 6.45 -52.48 -0.34 0.89 16 34 H 0.06 0.53 7.11 -51.93 -0.37 0.16 16 35 H 0.07 0.54 6.35 -51.93 -0.33 0.21 16 36 H 0.08 0.59 7.83 -51.93 -0.41 0.18 16 37 H 0.08 1.14 7.49 -51.93 -0.39 0.75 16 38 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.37 6.62 8.31 45.56 0.38 7.00 16 40 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 42 H 0.01 0.31 7.77 -51.93 -0.40 -0.10 16 43 H 0.00 -0.04 7.06 -51.93 -0.37 -0.41 16 44 H 0.06 1.59 6.84 -51.93 -0.36 1.24 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -33.02 375.53 -9.09 -42.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.71 Total: 3.78 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.51 Total: 3.36 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.46 Total: -49.88 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.63 Total: -19.84 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.42 Total: -2.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.02 -9.09 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284492273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.994 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds