Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38096 * 120.07761 * 2 1 4 4 Cl 1.73601 * 119.94432 * 0.02562 * 3 2 1 5 5 C 1.38449 * 120.11534 * 180.02562 * 3 2 1 6 6 C 1.38362 * 120.27937 * 0.02562 * 5 3 2 7 7 C 1.37936 * 120.15873 * 359.75115 * 6 5 3 8 8 C 1.39540 * 120.07876 * 180.02562 * 2 1 3 9 9 C 1.47841 * 120.13969 * 359.95997 * 8 2 1 10 10 O 1.21556 * 120.00354 * 50.82418 * 9 8 2 11 11 N 1.34778 * 119.99850 * 230.82293 * 9 8 2 12 12 C 1.46503 * 120.00051 * 355.31448 * 11 9 8 13 13 C 1.46502 * 120.00243 * 175.30489 * 11 9 8 14 14 C 1.53002 * 109.47008 * 90.00142 * 13 11 9 15 15 H 1.09001 * 109.46970 * 60.00133 * 14 13 11 16 16 O 1.42900 * 109.47079 * 300.00366 * 14 13 11 17 17 C 1.52994 * 109.47291 * 179.97438 * 14 13 11 18 18 N 1.46493 * 109.47098 * 185.00157 * 17 14 13 19 19 C 1.46507 * 119.99919 * 269.99913 * 18 17 14 20 20 C 1.36936 * 120.00121 * 90.00486 * 18 17 14 21 21 H 1.07996 * 119.99892 * 330.16636 * 20 18 17 22 22 C 1.38810 * 120.00287 * 149.89836 * 20 18 17 23 23 N 1.31623 * 120.00196 * 1.65254 * 22 20 18 24 24 Si 1.86802 * 120.00340 * 181.65747 * 22 20 18 25 25 H 1.48498 * 109.47062 * 89.99743 * 24 22 20 26 26 H 1.48502 * 109.47260 * 210.00008 * 24 22 20 27 27 H 1.48501 * 109.46524 * 329.99724 * 24 22 20 28 28 H 1.09000 * 109.47263 * 274.44887 * 1 2 3 29 29 H 1.08999 * 109.46939 * 34.44982 * 1 2 3 30 30 H 1.08999 * 109.47180 * 154.45221 * 1 2 3 31 31 H 1.08004 * 119.86254 * 180.02562 * 5 3 2 32 32 H 1.08001 * 119.92041 * 180.02562 * 6 5 3 33 33 H 1.08008 * 120.05840 * 180.25432 * 7 6 5 34 34 H 1.09000 * 109.46565 * 275.47129 * 12 11 9 35 35 H 1.08993 * 109.47379 * 35.46642 * 12 11 9 36 36 H 1.08993 * 109.47622 * 155.47209 * 12 11 9 37 37 H 1.09001 * 109.47146 * 330.00382 * 13 11 9 38 38 H 1.08999 * 109.47114 * 210.00475 * 13 11 9 39 39 H 0.96702 * 113.99959 * 299.99691 * 16 14 13 40 40 H 1.09004 * 109.47000 * 64.99783 * 17 14 13 41 41 H 1.09002 * 109.47154 * 305.00232 * 17 14 13 42 42 H 1.09000 * 109.47297 * 273.40172 * 19 18 17 43 43 H 1.08998 * 109.47043 * 33.40556 * 19 18 17 44 44 H 1.08998 * 109.46741 * 153.40409 * 19 18 17 45 45 H 0.96994 * 120.00606 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1991 1.1950 0.0000 4 17 1.3317 2.6988 0.0007 5 6 3.5836 1.1959 -0.0005 6 6 4.2821 0.0015 -0.0016 7 6 3.6023 -1.1987 0.0030 8 6 2.2064 -1.2075 -0.0005 9 6 1.4721 -2.4906 -0.0002 10 8 0.5925 -2.6878 -0.8157 11 7 1.7779 -3.4418 0.9043 12 6 2.9047 -3.2467 1.8201 13 6 0.9835 -4.6709 0.9720 14 6 1.5905 -5.7224 0.0410 15 1 2.6141 -5.9339 0.3503 16 8 1.5905 -5.2284 -1.2998 17 6 0.7613 -7.0062 0.1122 18 7 1.4086 -8.0505 -0.6856 19 6 1.0727 -8.2030 -2.1035 20 6 2.3275 -8.8841 -0.1062 21 1 2.9305 -8.5333 0.7183 22 6 2.4802 -10.1817 -0.5748 23 7 1.7648 -10.6007 -1.5971 24 14 3.7008 -11.3335 0.2455 25 1 3.0241 -12.0734 1.3408 26 1 4.2209 -12.2986 -0.7562 27 1 4.8279 -10.5441 0.8039 28 1 -0.3634 0.0797 1.0246 29 1 -0.3633 0.8474 -0.5813 30 1 -0.3633 -0.9272 -0.4432 31 1 4.1208 2.1329 -0.0001 32 1 5.3621 0.0090 -0.0016 33 1 4.1492 -2.1301 0.0063 34 1 3.8286 -3.5531 1.3296 35 1 2.9712 -2.1941 2.0952 36 1 2.7527 -3.8476 2.7166 37 1 -0.0401 -4.4594 0.6628 38 1 0.9835 -5.0477 1.9948 39 1 0.7106 -5.0186 -1.6417 40 1 -0.2376 -6.8157 -0.2803 41 1 0.6877 -7.3342 1.1490 42 1 0.2002 -8.8488 -2.2028 43 1 0.8517 -7.2254 -2.5318 44 1 1.9162 -8.6485 -2.6308 45 1 1.8712 -11.5076 -1.9244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284492273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -56.349193 kcal Electronic energy + Delta-G solvation = -27690.467014 eV Core-core repulsion = 23734.104247 eV Total energy + Delta-G solvation = -3956.362767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63840 -39.82866 -38.62846 -37.43493 -36.80898 -36.10746 -33.80966 -33.29863 -32.41435 -30.85922 -28.29205 -28.15533 -27.78295 -26.87917 -24.65164 -23.51486 -22.62860 -22.19911 -20.58893 -18.79731 -18.53810 -17.78215 -17.23229 -17.07982 -16.85156 -16.71896 -16.26591 -15.88662 -15.81268 -15.33119 -15.14310 -14.82529 -14.73065 -14.49650 -14.22414 -14.05963 -13.70548 -13.43322 -13.37281 -13.17917 -13.06475 -12.81724 -12.79636 -12.70658 -12.56100 -12.49738 -12.30253 -12.17188 -12.05560 -11.92830 -11.82831 -11.80453 -11.20230 -10.85336 -10.57104 -9.92584 -9.70630 -9.61165 -8.56719 -7.83227 -5.36366 -0.16062 0.10802 1.04814 1.46655 1.48092 1.56935 1.66916 1.99048 2.50512 2.53786 3.32190 3.39085 3.60566 3.68841 3.75266 3.89211 3.95625 4.12756 4.22979 4.25691 4.28511 4.46310 4.54230 4.57657 4.59718 4.63330 4.65084 4.67468 4.74190 4.89532 4.97613 5.00830 5.12708 5.15549 5.24395 5.27877 5.30763 5.40132 5.51200 5.62206 5.67751 5.71258 6.34201 6.38209 6.93840 7.12363 7.17764 7.87573 8.36675 9.21244 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.002346 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.730969 B =11930.280436 C =12410.436043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C -0.054 4.054 4 Cl -0.061 7.061 5 C -0.084 4.084 6 C -0.109 4.109 7 C -0.082 4.082 8 C -0.131 4.131 9 C 0.562 3.438 10 O -0.559 6.559 11 N -0.600 5.600 12 C 0.069 3.931 13 C 0.093 3.907 14 C 0.085 3.915 15 H 0.076 0.924 16 O -0.565 6.565 17 C 0.123 3.877 18 N -0.613 5.613 19 C 0.186 3.814 20 C -0.263 4.263 21 H 0.072 0.928 22 C -0.054 4.054 23 N -0.941 5.941 24 Si 0.973 3.027 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.266 1.266 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.142 0.858 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.370 0.630 40 H 0.047 0.953 41 H 0.064 0.936 42 H -0.011 1.011 43 H 0.019 0.981 44 H 0.023 0.977 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 27.107 9.528 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.081 4.081 4 Cl -0.033 7.033 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.101 4.101 8 C -0.134 4.134 9 C 0.351 3.649 10 O -0.439 6.439 11 N -0.331 5.331 12 C -0.073 4.073 13 C -0.031 4.031 14 C 0.022 3.978 15 H 0.094 0.906 16 O -0.370 6.370 17 C -0.004 4.004 18 N -0.336 5.336 19 C 0.041 3.959 20 C -0.393 4.393 21 H 0.089 0.911 22 C -0.249 4.249 23 N -0.588 5.588 24 Si 0.800 3.200 25 H -0.208 1.208 26 H -0.224 1.224 27 H -0.191 1.191 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.007 0.993 43 H 0.038 0.962 44 H 0.042 0.958 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.513 26.876 9.112 28.595 hybrid contribution -0.274 -0.973 -0.126 1.019 sum 3.239 25.903 8.986 27.608 Atomic orbital electron populations 1.21081 0.90065 1.04548 1.03388 1.19775 0.97138 0.90489 0.97008 1.20802 0.93214 0.86455 1.07606 1.98364 1.77077 1.30889 1.96920 1.21562 0.91143 1.00802 0.96765 1.21408 1.02002 0.90189 0.99073 1.21665 0.91907 1.00420 0.96069 1.19663 0.94748 0.92004 1.07018 1.18456 0.82396 0.83744 0.80308 1.90684 1.33959 1.80729 1.38540 1.47722 1.32649 1.17431 1.35247 1.22194 0.87937 1.03663 0.93487 1.22245 0.95397 0.83685 1.01758 1.22932 1.00359 0.92337 0.82156 0.90607 1.86520 1.34184 1.86521 1.29779 1.21518 0.94165 0.88609 0.96116 1.43913 1.47448 1.36114 1.06145 1.20448 0.97108 0.94041 0.84337 1.19495 1.13186 0.91628 1.14994 0.91074 1.26071 1.01196 0.98608 0.99042 1.70240 1.44227 1.16967 1.27340 0.85191 0.78631 0.78627 0.77514 1.20809 1.22389 1.19095 0.89914 0.90183 0.90664 0.82064 0.81217 0.83988 0.91942 0.89741 0.88805 0.90247 0.86901 0.78232 0.93461 0.91777 0.99290 0.96244 0.95832 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.20 71.24 0.66 -2.21 16 2 C -0.04 -0.90 5.91 -19.58 -0.12 -1.02 16 3 C -0.05 -0.95 6.31 22.29 0.14 -0.81 16 4 Cl -0.06 -0.99 27.38 -2.72 -0.07 -1.07 16 5 C -0.08 -1.09 9.82 22.35 0.22 -0.87 16 6 C -0.11 -1.31 10.03 22.23 0.22 -1.09 16 7 C -0.08 -1.40 7.84 22.53 0.18 -1.22 16 8 C -0.13 -2.93 4.84 -20.09 -0.10 -3.03 16 9 C 0.56 15.33 6.25 86.79 0.54 15.87 16 10 O -0.56 -18.95 12.96 8.99 0.12 -18.83 16 11 N -0.60 -14.03 2.83 -850.19 -2.40 -16.44 16 12 C 0.07 1.09 9.13 127.77 1.17 2.25 16 13 C 0.09 2.33 5.18 86.38 0.45 2.78 16 14 C 0.08 2.87 3.48 30.59 0.11 2.98 16 15 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 16 O -0.56 -21.81 10.82 -136.09 -1.47 -23.28 16 17 C 0.12 4.84 5.34 86.38 0.46 5.30 16 18 N -0.61 -31.49 2.88 -726.95 -2.10 -33.58 16 19 C 0.19 9.89 8.82 127.77 1.13 11.01 16 20 C -0.26 -14.47 9.60 84.03 0.81 -13.67 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 22 C -0.05 -3.09 5.30 84.86 0.45 -2.64 16 23 N -0.94 -57.15 10.51 21.65 0.23 -56.92 16 24 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.57 7.10 -2.39 -0.02 1.55 16 30 H 0.07 1.98 5.40 -2.39 -0.01 1.97 16 31 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.14 2.24 6.45 -2.91 -0.02 2.22 16 34 H 0.06 0.97 7.11 -2.39 -0.02 0.95 16 35 H 0.08 1.10 6.35 -2.39 -0.02 1.08 16 36 H 0.09 1.15 7.83 -2.39 -0.02 1.13 16 37 H 0.08 2.10 7.49 -2.39 -0.02 2.08 16 38 H 0.11 2.20 7.86 -2.39 -0.02 2.18 16 39 H 0.37 13.54 8.31 -74.06 -0.62 12.92 16 40 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 41 H 0.06 2.37 8.04 -2.39 -0.02 2.35 16 42 H -0.01 -0.64 7.77 -2.39 -0.02 -0.66 16 43 H 0.02 0.92 7.06 -2.39 -0.02 0.91 16 44 H 0.02 1.36 6.84 -2.39 -0.02 1.35 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -72.85 375.53 3.03 -69.81 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.40 Total: 19.63 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.31 Total: 13.64 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.27 Total: -106.94 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.36 Total: -42.11 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.07 Total: -1.07 kcal Total: -72.85 3.03 -69.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284492273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.465 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds