Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.53940 * 113.74590 * 271.67685 * 15 14 13 17 17 N 1.47579 * 86.11747 * 222.04404 * 16 15 14 18 18 C 1.34776 * 134.49193 * 204.63720 * 17 16 15 19 19 O 1.21281 * 120.00306 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.99947 * 0.02562 * 18 17 16 21 21 H 1.09006 * 115.51162 * 34.62971 * 20 18 17 22 22 C 1.53000 * 117.43702 * 179.97438 * 20 18 17 23 23 H 1.09004 * 119.80371 * 355.36792 * 22 20 18 24 24 C 1.54471 * 118.07231 * 199.10217 * 22 20 18 25 25 O 1.44423 * 104.80309 * 321.13033 * 24 22 20 26 26 C 1.44420 * 105.27430 * 319.48808 * 25 24 22 27 27 C 1.52996 * 117.43355 * 249.34730 * 20 18 17 28 28 H 1.09003 * 119.81131 * 4.63328 * 27 20 18 29 29 C 1.47581 * 91.01399 * 24.63846 * 17 16 15 30 30 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 32 32 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 33 33 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 34 34 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 35 35 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 36 36 H 1.09009 * 112.94206 * 43.40662 * 15 14 13 37 37 H 1.09000 * 113.76604 * 336.34496 * 16 15 14 38 38 H 1.08998 * 113.77101 * 107.74050 * 16 15 14 39 39 H 1.09004 * 110.37177 * 79.95908 * 24 22 20 40 40 H 1.08998 * 110.37853 * 202.29666 * 24 22 20 41 41 H 1.09001 * 110.37265 * 159.34368 * 26 25 24 42 42 H 1.09005 * 110.36954 * 281.56653 * 26 25 24 43 43 H 1.08997 * 113.76460 * 221.05697 * 29 17 16 44 44 H 1.09000 * 113.87296 * 89.67668 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 4.0035 -9.0581 -1.4491 17 7 4.0957 -10.4452 -0.9537 18 6 4.8211 -11.5263 -1.3020 19 8 4.6845 -12.5688 -0.6975 20 6 5.8029 -11.4396 -2.4420 21 1 6.3115 -10.4817 -2.5517 22 6 6.5958 -12.7017 -2.7872 23 1 6.4930 -13.5925 -2.1674 24 6 7.8916 -12.5431 -3.6130 25 8 7.5880 -11.5165 -4.5823 26 6 6.2390 -11.7918 -5.0183 27 6 5.4675 -12.2089 -3.7213 28 1 4.5125 -12.7274 -3.8072 29 6 3.0745 -10.1729 0.0764 30 1 -0.4849 0.8401 0.0004 31 1 3.1244 -3.7267 -0.9039 32 1 3.1244 -3.7361 0.8761 33 1 3.8007 -6.1835 -0.0260 34 1 1.7212 -7.8796 0.8553 35 1 1.7219 -7.8705 -0.9248 36 1 4.2964 -8.4167 0.6526 37 1 3.2557 -8.9193 -2.2299 38 1 4.9679 -8.6157 -1.6986 39 1 8.7143 -12.2276 -2.9712 40 1 8.1384 -13.4783 -4.1154 41 1 5.7921 -10.8993 -5.4562 42 1 6.2324 -12.6106 -5.7378 43 1 3.2973 -10.6206 1.0449 44 1 2.0532 -10.3613 -0.2544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284950763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -44.709236 kcal Electronic energy + Delta-G solvation = -25663.148875 eV Core-core repulsion = 21709.334560 eV Total energy + Delta-G solvation = -3953.814315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33083 -40.38077 -39.11544 -38.11259 -34.85231 -34.55132 -32.44791 -31.18910 -29.34023 -29.17464 -27.28404 -26.58923 -25.65276 -25.26767 -22.32874 -21.23310 -20.98181 -20.27464 -19.36193 -18.09039 -17.83651 -16.82039 -16.72837 -16.46451 -16.28912 -15.80972 -15.62030 -15.31840 -15.20084 -14.82170 -14.55440 -14.07129 -13.76673 -13.69787 -13.36350 -13.14665 -13.12271 -13.08247 -12.66407 -12.47480 -12.27760 -12.10916 -11.85431 -11.73262 -11.26037 -11.06771 -11.05379 -10.91273 -10.79004 -10.74167 -10.36549 -10.10133 -9.84785 -9.47717 -9.17626 -9.08682 -8.97491 -8.26946 -6.52667 -6.23598 -3.94534 1.94581 2.20000 2.95612 3.03645 3.04959 3.22064 3.25412 3.27910 3.29597 3.58552 3.82697 3.92417 4.02619 4.16749 4.18564 4.22294 4.36040 4.42546 4.57151 4.75589 4.78262 4.84730 4.92152 5.01060 5.04058 5.11402 5.11891 5.13097 5.15811 5.18755 5.27674 5.33120 5.41856 5.52068 5.55180 5.65201 5.82672 5.85724 6.10322 6.14306 6.51178 7.18961 7.57144 7.61945 7.69186 8.32905 8.54443 9.21660 10.83719 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.001694 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.544252 B =16521.886750 C =17570.130739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.131 3.869 15 C -0.134 4.134 16 C 0.106 3.894 17 N -0.641 5.641 18 C 0.569 3.431 19 O -0.540 6.540 20 C -0.143 4.143 21 H 0.126 0.874 22 C -0.168 4.168 23 H 0.136 0.864 24 C 0.071 3.929 25 O -0.371 6.371 26 C 0.072 3.928 27 C -0.171 4.171 28 H 0.132 0.868 29 C 0.118 3.882 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.612 -25.490 -6.577 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C 0.006 3.994 15 C -0.154 4.154 16 C -0.016 4.016 17 N -0.376 5.376 18 C 0.358 3.642 19 O -0.417 6.417 20 C -0.164 4.164 21 H 0.144 0.856 22 C -0.187 4.187 23 H 0.154 0.846 24 C -0.005 4.005 25 O -0.290 6.290 26 C -0.005 4.005 27 C -0.190 4.190 28 H 0.150 0.850 29 C -0.004 4.004 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.622 -26.296 -6.395 29.861 hybrid contribution 2.231 1.197 0.104 2.534 sum 14.852 -25.099 -6.291 29.835 Atomic orbital electron populations 1.70009 1.05949 1.27587 1.46710 1.24996 0.95034 0.99033 0.94509 0.86223 0.79239 0.81233 0.78802 1.19932 1.20811 1.19940 1.22825 0.94870 0.91652 1.59144 0.90959 1.85404 1.04885 0.96344 1.96730 1.23532 1.06617 0.95344 1.04961 1.20319 0.86498 0.86291 0.75068 1.90711 1.15387 1.85597 1.47362 1.45978 1.09995 1.05263 1.78202 1.21206 0.94681 0.80409 1.03114 1.23436 0.99351 0.94723 0.97874 1.23446 1.02309 0.79037 0.96855 1.49852 1.40276 1.11375 1.36118 1.19129 0.80249 0.81588 0.83209 1.90717 1.67951 1.28529 1.54476 1.21997 1.00673 0.98854 0.94878 0.85594 1.24050 0.93559 0.98842 1.02210 0.84634 1.23008 0.95900 0.92277 0.89329 1.89195 1.30127 1.50432 1.59237 1.23347 0.81454 1.01972 0.93689 1.24506 1.00615 1.03777 0.90089 0.85022 1.23160 0.92638 0.91908 0.92719 0.92112 0.89176 0.89195 0.76737 0.90760 0.90965 0.87073 0.88783 0.89501 0.88283 0.90601 0.88216 0.90659 0.89447 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 11 C 0.53 9.12 7.85 -10.99 -0.09 9.04 16 12 O -0.52 -11.08 15.86 5.56 0.09 -10.99 16 13 N -0.74 -8.24 5.56 -60.29 -0.33 -8.58 16 14 C 0.13 1.17 5.53 -4.04 -0.02 1.15 16 15 C -0.13 -0.82 3.94 -89.70 -0.35 -1.18 16 16 C 0.11 0.62 8.17 -2.98 -0.02 0.60 16 17 N -0.64 -5.25 3.61 -178.38 -0.64 -5.89 16 18 C 0.57 5.77 7.84 -10.99 -0.09 5.69 16 19 O -0.54 -7.41 17.07 5.56 0.09 -7.31 16 20 C -0.14 -1.11 5.28 -91.77 -0.48 -1.60 16 21 H 0.13 0.91 8.04 -51.93 -0.42 0.49 16 22 C -0.17 -1.18 6.64 -89.03 -0.59 -1.77 16 23 H 0.14 1.04 7.81 -51.93 -0.41 0.64 16 24 C 0.07 0.42 7.53 37.93 0.29 0.70 16 25 O -0.37 -2.87 11.30 -35.23 -0.40 -3.27 16 26 C 0.07 0.41 7.57 39.08 0.30 0.70 16 27 C -0.17 -1.12 7.13 -87.88 -0.63 -1.74 16 28 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 29 C 0.12 0.84 8.40 -2.98 -0.03 0.81 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 32 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 33 H 0.40 3.25 8.47 -40.82 -0.35 2.90 16 34 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.07 0.69 7.84 -51.92 -0.41 0.29 16 36 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.09 0.52 7.89 -51.93 -0.41 0.11 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -37.19 388.91 -9.73 -46.93 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.60 Total: -0.89 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.30 Total: -3.02 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.24 Total: -39.54 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.21 Total: -21.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.19 -9.73 -46.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284950763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.217 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds